Carg25706 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25706
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ORMDL family protein
Location	Cucurbita_argyrosperma_scaffold_341 : 73481 .. 75184 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATTTATTTGTTTAGTTGGGGCGGTGGATAAGTGTCGTTATAATGCTTTCTAAATATCATCAGAGCTTGGTTACCAATTTTGAGCACTGGTTTTCGATCATTCATCCAACCCCACGAAGAAACCATACCTAAAATCTATCTGGGTTTCCTTTGTAATATTCGAACTACTTAGCACGCGATCGAACGCTGCAATCTGTTTTGCAAATCGGATCATTTTTCTCAGTCAAATCCGAAGGGGAGGTTGGATTTTTCCCATCAGCAGTGTTTCGGGACAAAATCAGAATCTGGGTCGATGGCTAGTCTCTATGTGAAGGCTGTACCTCCGGCGGATCTGAACAGGAACACAGAATGGTTTCTGTATCCTGGTGTTTGGACCACCTATATTCTCATTCTCTTCTTCGTTTGGCTTCTCGTCCTCTCTGTATTTGGCTGCTCTCCTGGCATGGCCTGGACCATCGTCAACCTATCCCATTTTGCTGTATGTGCATCTATATTTCTTCTCTTGTTGATTTTTTTTTTTTTAATCTGGGTTTTGTTTCATTCCTGGGATATCATCATTGAACTTGGGATTGTTGTTGACTTGTGCTATTAATTTTTGGGTCATCCTGCGGCATGGTTTCAGTGTTTGTGTATTGTTTTATGCTGCTTTAGTTCCCTTCAATTTAATCTTGTTGAGGATGCTGGGTGAGATTTCATTTGGTTGATTTTGTCTAGACAAAAGAAAAACAGCCAACTGTTGTGGCTTCGTGTTTACGCTTGCTTTGATAATTATATGCCTATTGAACTGCCATGTATGGTAGATAAATATTCTATTTTCTTTGATTTCATAACATTTTTCCGTGATTGTTTTATTTCAAGCCTCGAGCCATTGATACTCTTTGGCTATTGTTTTGAAAAGACATCTCATTTTATATGCAAGTGTGGATCTTTCTGGATTAAGAGTCAGTGAACTCTGTTTACTATTGGCCTGGACATACCCGCTTCAATGCGTGGTTCACTCTCCTTTCTAGAGAGCCAGCTATGAGCTTAGAATGACTTAGAACATTCATTTGCTCCATTCTTTGAAGTGATATGCTCTCTGTCTTTGCATAAAATGATGGAAAGGAGCGTGTCTTATTTCAGGTCACTTACCACTTTTTCCATTGGAAGAAAGGGACACCCTTTGCTGAAGACCAAGGGATGTACAACCGATTGACGTGGTGGGAGCAGATTGATAATGGAAAGCAGCTTACTCGCAACAGAAAGTTCTTGACTGTTGTTCCCGTGGTGCTGTAAGTTGTTTATTATATCAAGCGACCTATGTACTATTTAACTCTGAGATCACATTTCAAACTGTTTTTGTTTGAGTTGTTTATTGTTGTCTATTTTACTGAACTCCTAAATTTGGGTGGGCTGTAGGACGTCTTGCTCTTAGTCTGCATATCTTTCTATGTTCTATTCTACATTGCTGCATTTTTTTTTTTTTTCAGTATTCATCTTCGTAGCTCTTCTGATGATTGATTGTAGAACTCTATTGACTAAATAGCCTCTTGTATGGAACTAAAAATCTCTAGGCTTGCGATTCTAGGGATAAGCTTACAAATTTTCTAGTTGACGCTGATCTTAACAGGCTTTGAATGAATTTTCTATTATGAGATTTGCTTTAATAATTTTCTATTAGGAAACATTCACATGGCTACTTCTACTAATTTTCTTAGAAGA

mRNA sequence

TAAAATTTATTTGTTTAGTTGGGGCGGTGGATAAGTGTCGTTATAATGCTTTCTAAATATCATCAGAGCTTGGTTACCAATTTTGAGCACTGGTTTTCGATCATTCATCCAACCCCACGAAGAAACCATACCTAAAATCTATCTGGGTTTCCTTTGTAATATTCGAACTACTTAGCACGCGATCGAACGCTGCAATCTGTTTTGCAAATCGGATCATTTTTCTCAGTCAAATCCGAAGGGGAGGTTGGATTTTTCCCATCAGCAGTGTTTCGGGACAAAATCAGAATCTGGGTCGATGGCTAGTCTCTATGTGAAGGCTGTACCTCCGGCGGATCTGAACAGGAACACAGAATGGTTTCTGTATCCTGGTGTTTGGACCACCTATATTCTCATTCTCTTCTTCGTTTGGCTTCTCGTCCTCTCTGTATTTGGCTGCTCTCCTGGCATGGCCTGGACCATCGTCAACCTATCCCATTTTGCTGTCACTTACCACTTTTTCCATTGGAAGAAAGGGACACCCTTTGCTGAAGACCAAGGGATGTACAACCGATTGACGTGGTGGGAGCAGATTGATAATGGAAAGCAGCTTACTCGCAACAGAAAGTTCTTGACTGTTGTTCCCGTGGTGCTGTAAGTTGTTTATTATATCAAGCGACCTATGTACTATTTAACTCTGAGATCACATTTCAAACTGTTTTTGTTTGAGTTGTTTATTGTTGTCTATTTTACTGAACTCCTAAATTTGGGTGGGCTGTAGGACGTCTTGCTCTTAGTCTGCATATCTTTCTATGTTCTATTCTACATTGCTGCATTTTTTTTTTTTTTCAGTATTCATCTTCGTAGCTCTTCTGATGATTGATTGTAGAACTCTATTGACTAAATAGCCTCTTGTATGGAACTAAAAATCTCTAGGCTTGCGATTCTAGGGATAAGCTTACAAATTTTCTAGTTGACGCTGATCTTAACAGGCTTTGAATGAATTTTCTATTATGAGATTTGCTTTAATAATTTTCTATTAGGAAACATTCACATGGCTACTTCTACTAATTTTCTTAGAAGA

Coding sequence (CDS)

ATGGCTAGTCTCTATGTGAAGGCTGTACCTCCGGCGGATCTGAACAGGAACACAGAATGGTTTCTGTATCCTGGTGTTTGGACCACCTATATTCTCATTCTCTTCTTCGTTTGGCTTCTCGTCCTCTCTGTATTTGGCTGCTCTCCTGGCATGGCCTGGACCATCGTCAACCTATCCCATTTTGCTGTCACTTACCACTTTTTCCATTGGAAGAAAGGGACACCCTTTGCTGAAGACCAAGGGATGTACAACCGATTGACGTGGTGGGAGCAGATTGATAATGGAAAGCAGCTTACTCGCAACAGAAAGTTCTTGACTGTTGTTCCCGTGGTGCTGTAA

Protein sequence

MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL

Homology

[Close]

BLAST of Carg25706 vs. NCBI nr
Match: XP_022924714.1 (ORM1-like protein 3 [Cucurbita moschata] >XP_022980852.1 ORM1-like protein 3 [Cucurbita maxima] >XP_023527391.1 ORM1-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 8.0e-61
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH
Sbjct: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. NCBI nr
Match: XP_008437865.1 (PREDICTED: ORM1-like protein 3 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 3.4e-59
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPPADLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYHFFHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. NCBI nr
Match: XP_022147418.1 (ORM1-like protein 3 [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 3.4e-59
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPPADLNRNTEWFLYPGVWTTYILILFF W+LVLSVFGCSPGMAWTIVNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFAWVLVLSVFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYHFFHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. NCBI nr
Match: XP_004133804.1 (PREDICTED: ORM1-like protein 3 [Cucumis sativus] >KGN56408.1 hypothetical protein Csa_3G119410 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 9.8e-59
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPP DLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPTDLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYHFFHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. NCBI nr
Match: XP_022947816.1 (ORM1-like protein 3 [Cucurbita moschata] >XP_022974857.1 ORM1-like protein 3 [Cucurbita maxima] >XP_022975547.1 ORM1-like protein 3 [Cucurbita maxima] >XP_023540703.1 ORM1-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 2.8e-58
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKA+PPADLNRNTEWFLYPGVWTTYILILFF WLLVLSVFGCSPGMAWTIVNLSH
Sbjct: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYH FHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. TAIR10
Match: AT1G01230.1 (ORMDL family protein)

HSP 1 Score: 211.8 bits (538), Expect = 2.1e-55
Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPP D+NRNTEWF+YPGVWTTY+LILFF WL+VLSV GCSPGMAWT+VNL+H
Sbjct: 1   MANLYVKAVPPPDMNRNTEWFMYPGVWTTYMLILFFGWLVVLSVSGCSPGMAWTVVNLAH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           F VTYH FHW KGTPFA+DQG+YN LTWWEQ+DNG+QLTRNRKFLT+VPVVL
Sbjct: 61  FVVTYHSFHWMKGTPFADDQGIYNGLTWWEQMDNGQQLTRNRKFLTLVPVVL 112

[Close]

BLAST of Carg25706 vs. TAIR10
Match: AT5G42000.1 (ORMDL family protein)

HSP 1 Score: 207.2 bits (526), Expect = 5.2e-54
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 4   LYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAV 63
           +YV+A+P  D+NRNTEWF YPGVWTTYILILFF WLLVLSVF CSPG+AWTIV+L+HF V
Sbjct: 1   MYVRALPTTDVNRNTEWFTYPGVWTTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV 60

Query: 64  TYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           TYH FHWKKGTPF +DQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  TYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 109

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BLAST of Carg25706 vs. Swiss-Prot
Match: sp|O42901|YBA9_SCHPO (Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC119.09c PE=2 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 15  NRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAVTYHFFHWKKGT 74
           N N+ W  Y G W  +I+++  + L+  ++   S  +AWT+ NL++ A ++  FHW  GT
Sbjct: 33  NYNSNWVNYKGAWVIHIVLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFIMFHWVTGT 92

Query: 75  PFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           PF  + G Y+RLT WEQ+D G Q T  RK+L V+P++L
Sbjct: 93  PFEFNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIIL 130

[Close]

BLAST of Carg25706 vs. Swiss-Prot
Match: sp|Q921I0|ORML1_MOUSE (ORM1-like protein 1 OS=Mus musculus OX=10090 GN=Ormdl1 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-15
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 9   VPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAVTYHFF 68
           V  +++N NT      G+W TY L +  + +++LS+  CS  +AWT+ N+ H    Y F 
Sbjct: 5   VAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFCSVPVAWTLTNIIHNLGMYVFL 64

Query: 69  HWKKGTPF-AEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           H  KGTPF   DQG    LT WEQ+D G Q T +RKF T+ P++L
Sbjct: 65  HAVKGTPFETPDQGRARLLTHWEQLDYGVQFTSSRKFFTISPIIL 109

[Close]

BLAST of Carg25706 vs. Swiss-Prot
Match: sp|Q53FV1|ORML2_HUMAN (ORM1-like protein 2 OS=Homo sapiens OX=9606 GN=ORMDL2 PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 9   VPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAVTYHFF 68
           V  +++N NT      G+W  YI+++  + +++LS+   S  + WT+ N+ H   TY F 
Sbjct: 5   VAHSEVNPNTRVMNSRGIWLAYIILVGLLHMVLLSIPFFSIPVVWTLTNVIHNLATYVFL 64

Query: 69  HWKKGTPF-AEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           H  KGTPF   DQG    LT WEQ+D G Q T +RKFL++ P+VL
Sbjct: 65  HTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVL 109

[Close]

BLAST of Carg25706 vs. Swiss-Prot
Match: sp|D2I2F3|ORML3_AILME (ORM1-like protein 3 OS=Ailuropoda melanoleuca OX=9646 GN=ORMDL3 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 12  ADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAVTYHFFHWK 71
           +++N NT      G+W +Y+L +  + +++LS+   S  + WT+ NL H    Y F H  
Sbjct: 8   SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNTGMYIFLHTV 67

Query: 72  KGTPF-AEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VL
Sbjct: 68  KGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVL 109

[Close]

BLAST of Carg25706 vs. Swiss-Prot
Match: sp|Q8N138|ORML3_HUMAN (ORM1-like protein 3 OS=Homo sapiens OX=9606 GN=ORMDL3 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 12  ADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSHFAVTYHFFHWK 71
           +++N NT      G+W +Y+L +  + +++LS+   S  + WT+ NL H    Y F H  
Sbjct: 8   SEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTV 67

Query: 72  KGTPF-AEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VL
Sbjct: 68  KGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVL 109

[Close]

BLAST of Carg25706 vs. TrEMBL
Match: tr|A0A1S3AVL5|A0A1S3AVL5_CUCME (ORM1-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103483168 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.2e-59
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPPADLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYHFFHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. TrEMBL
Match: tr|A0A0A0L3T2|A0A0A0L3T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119410 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.5e-59
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPP DLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPTDLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           FAVTYHFFHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. TrEMBL
Match: tr|A0A061DTH4|A0A061DTH4_THECC (ORMDL family protein OS=Theobroma cacao OX=3641 GN=TCM_005108 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.4e-58
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPPADLNRNTEWF+YPGVWTTYILILFF WLLVLS+FGCSPGMAWTIVNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFSWLLVLSIFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           F VTYHFFHWKKGTPFAEDQG+YN LTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FLVTYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. TrEMBL
Match: tr|A0A0B0MEV4|A0A0B0MEV4_GOSAR (ORM1-like protein 1 OS=Gossypium arboreum OX=29729 GN=F383_12486 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPPADLNRNTEWFLYPGVWTTYILILFF WLLVLS+FGCSPGMAWT+VNL+H
Sbjct: 1   MANLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFSWLLVLSIFGCSPGMAWTVVNLAH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           F VTYHFFHWKKGTPFAEDQG+YN LTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FLVTYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

[Close]

BLAST of Carg25706 vs. TrEMBL
Match: tr|A0A067K9G3|A0A067K9G3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14230 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKAVPPADLNRNTEWF+YPGVWTTYILILFF WLLVLS+FGCSPGMAWTIVNL+H
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFCWLLVLSIFGCSPGMAWTIVNLAH 60

Query: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVL 113
           F +TYHFFHWKKGTPFAEDQG+YN LTWWEQIDNGKQLTRNRKFLTVVPVVL
Sbjct: 61  FCITYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVL 112

The following BLAST results are available for this feature:

BLAST of Carg25706 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924714.1	8.0e-61	100.00	ORM1-like protein 3 [Cucurbita moschata] >XP_022980852.1 ORM1-like protein 3 [Cu...	[more]
XP_008437865.1	3.4e-59	95.54	PREDICTED: ORM1-like protein 3 [Cucumis melo]	[more]
XP_022147418.1	3.4e-59	96.43	ORM1-like protein 3 [Momordica charantia]	[more]
XP_004133804.1	9.8e-59	94.64	PREDICTED: ORM1-like protein 3 [Cucumis sativus] >KGN56408.1 hypothetical protei...	[more]
XP_022947816.1	2.8e-58	95.54	ORM1-like protein 3 [Cucurbita moschata] >XP_022974857.1 ORM1-like protein 3 [Cu...	[more]

BLAST of Carg25706 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01230.1	2.1e-55	83.04	ORMDL family protein	[more]
AT5G42000.1	5.2e-54	84.40	ORMDL family protein	[more]

BLAST of Carg25706 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O42901\|YBA9_SCHPO	1.3e-17	40.82	Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
sp\|Q921I0\|ORML1_MOUSE	2.7e-15	41.90	ORM1-like protein 1 OS=Mus musculus OX=10090 GN=Ormdl1 PE=2 SV=1	[more]
sp\|Q53FV1\|ORML2_HUMAN	3.5e-15	40.95	ORM1-like protein 2 OS=Homo sapiens OX=9606 GN=ORMDL2 PE=1 SV=2	[more]
sp\|D2I2F3\|ORML3_AILME	3.5e-15	42.16	ORM1-like protein 3 OS=Ailuropoda melanoleuca OX=9646 GN=ORMDL3 PE=3 SV=1	[more]
sp\|Q8N138\|ORML3_HUMAN	3.5e-15	42.16	ORM1-like protein 3 OS=Homo sapiens OX=9606 GN=ORMDL3 PE=1 SV=1	[more]

BLAST of Carg25706 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVL5\|A0A1S3AVL5_CUCME	2.2e-59	95.54	ORM1-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103483168 PE=4 SV=1	[more]
tr\|A0A0A0L3T2\|A0A0A0L3T2_CUCSA	6.5e-59	94.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119410 PE=4 SV=1	[more]
tr\|A0A061DTH4\|A0A061DTH4_THECC	9.4e-58	93.75	ORMDL family protein OS=Theobroma cacao OX=3641 GN=TCM_005108 PE=4 SV=1	[more]
tr\|A0A0B0MEV4\|A0A0B0MEV4_GOSAR	1.6e-57	92.86	ORM1-like protein 1 OS=Gossypium arboreum OX=29729 GN=F383_12486 PE=4 SV=1	[more]
tr\|A0A067K9G3\|A0A067K9G3_JATCU	1.6e-57	91.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14230 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005789	endoplasmic reticulum membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR007203	ORMDL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25706-RA	Carg25706-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007203	ORMDL family	PIRSF	PIRSF018147	ORM1	coord: 2..112 e-value: 6.4E-48 score: 160.8
IPR007203	ORMDL family	PFAM	PF04061	ORMDL	coord: 15..112 e-value: 3.5E-38 score: 130.4
IPR007203	ORMDL family	PANTHER	PTHR12665	ORMDL PROTEINS	coord: 1..112
None	No IPR available	PANTHER	PTHR12665:SF14	SUBFAMILY NOT NAMED	coord: 1..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25706	Cla021139	Watermelon (97103) v1	carwmB0122
Carg25706	Csa3G119410	Cucumber (Chinese Long) v2	carcuB0132
Carg25706	MELO3C006007	Melon (DHL92) v3.5.1	carmeB0128
Carg25706	ClCG05G000680	Watermelon (Charleston Gray)	carwcgB0122
Carg25706	CSPI03G07770	Wild cucumber (PI 183967)	carcpiB0137
Carg25706	Cucsa.259390	Cucumber (Gy14) v1	carcgyB0148
Carg25706	CmaCh06G009760	Cucurbita maxima (Rimu)	carcmaB0163
Carg25706	CmaCh14G021200	Cucurbita maxima (Rimu)	carcmaB0162
Carg25706	CmoCh06G010280	Cucurbita moschata (Rifu)	carcmoB0171
Carg25706	CmoCh14G021820	Cucurbita moschata (Rifu)	carcmoB0170
Carg25706	Lsi05G021400	Bottle gourd (USVL1VR-Ls)	carlsiB110
Carg25706	Cp4.1LG03g15830	Cucurbita pepo (Zucchini)	carcpeB0179
Carg25706	Cp4.1LG08g00740	Cucurbita pepo (Zucchini)	carcpeB0180
Carg25706	CsGy3G007900	Cucumber (Gy14) v2	carcgybB0131
Carg25706	MELO3C006007.2	Melon (DHL92) v3.6.1	carmedB0132
Carg25706	CsaV3_3G007890	Cucumber (Chinese Long) v3	carcucB0141
Carg25706	Cla97C05G080780	Watermelon (97103) v2	carwmbB0130
Carg25706	Bhi01G000372	Wax gourd	carwgoB0153

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25706	Carg20906	Silver-seed gourd	carcarB146

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25706	Cucurbita maxima (Rimu)	carcmaB0164
Carg25706	Wax gourd	carwgoB0152