Carg20906 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20906
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ORMDL family protein
Location	Cucurbita_argyrosperma_scaffold_141 : 270683 .. 275499 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTTGGGGCGGTGGGTAAGGGTTAGTGCTTTCTTATTATTATCATCAGAGCTTGATTCCCAATTTTAAGCTCTGTTCTTCGATCATTGCCCAACCCCACGAACGAAAGAAACCATACCTAGATAAAAGCCATCTGGGTTTCCTTTCTAATATTTGAACTATTAACCACGCCATCAATCGCTGCGATTTGATTTGCAAATTCCGTTCTTTTTCTTAGTTGATTCCGTAGGAGAGGTTGGATTTTTTCGCATCACCGGTGTTTCGGAGCAAAATCAGAATCTGGGTTGATGGCTAATCTCTATGTCAAGGCTATGCCTCCGGCGGATCTGAATAGGAACACGGAATGGTTTCTTTATCCTGGTGTTTGGACGACTTATATTCTCATTTTGTTCTTCACTTGGCTTCTCGTTCTCTCTGTATTTGGCTGCTCTCCTGGAATGGCCTGGACCATCGTCAATCTATCTCATTTTGCTGTATGTGCATCGATTTTGTTTTTTCTTTTCTTTTTGATCTGGGTGTTGTTTCCTTCCCTTGATATCATCATTGGACGTTGGATTGTTGTTGACTTGTATGCTGCTGTAATCCTCTTCAATTTAATCTTATTGTGATTTCGTTTTCGTTGATTTTGTGAAAATGAAACAAGGATGGATAGCCCAACTGTTCTGGCTTGGTGAATTTGATTTTGGATTCATGCTTGGTTTGGTAATTATATGCTTATTGTACTTGCATGTAAGTAATTTTGATAGAAAGAGATTCATTTCTTCTGTTCGATTTTTACTGTTTCAGATGTTCATCTTTGGATTCTTGGTGCGGAGGGATATTGTAGTAGATAAACATTCTAGTATCTTTGATTTCATAACCCTTTTCCGTGTTGTTTTATTTCAAGCCTCGAGCCATTGATAGTCTTAGGCTGTTGTTTAGTTTAATGGCACCAAGTTTGTTTGTGGAAGCCAAACGGGTGAAATGTGATTAGAAATGGTTGAAAAGACCATAATTGTTTCAGCCTGTGTTTGATGTATTGCCATACATGTTTTTATGTGTAAATGTGAATCTTTCTGGGTTAAGAGTCAGTGAACTCCGTTCGTAATTTTCTCGATGTGTGGTCCTAGCGATCAGCTTAGAATGATTTAGAACGTTCTTATGCTCCGTGTATAAAATGATAGAAATTTGTGTGTCTTTTACTTCAGGTCACTTACCACTGCTTCCACTGGAAGAAAGGGACACCATTTGCTGAAGACCAAGGGATCTACAACAGATTGACATGGTGGGAGCAGATTGATAACGGAAAGCAGCTTACCCGCAACCGAAAATTCTTGACTGTTGTTCCTGTGGTGCTGTAAGTTATCTATTATATTACGAAACCTAAGTACTACATAATTCTGAAATCAAATTTTAGACTGCTTTTATTTGAGTTGTTTTTTGTTGTTTTATTTTCCTGAACTCATGAATTTGAGTGAGACTTTTAAGGATGTCTTACTCATACTCTACGCGTTTTTGACAGCCGATGTTTTCTATGTTCTCTTCTATATTGTTGTGTGATATTTCTCTGATATGGATAAATCATCTTCATAGTTCTTCTGATGATTGATTGGAGAGTTCGACTCAATGACCTCTTTTTTCTAACTCAAAATCTCCAGGCTTGTGATTCTAGGGATTATTACCTAAACTTACAAATTTTTTAGTTGGCGAACTTGAGAGCTATGGCGGTAGACACTGATCTTAACAGCCTCTAAATGATAAGATGATGGTTGTTGCTGCAAAATTTTGAATACGATGACATTGGCAAATCGTCGTATTTTCCTAGTGGCGGTGGAAACCAAACTAGGCCGACAAAGCTGAACCGAACGAAGTGGGCTGTGTTTTTTGTGTTTTGTTTTGTTGGGCATTTTAACAGTTCTTATCATGAACTTGGCCTTCGTCGGATTTTTGCTTACTAATTTCATTTTTTATCCCAGATCCAATCCATAAGTACGGATCCAGGGCCTTATAAATGTGTACCCTAGAACTTGAACATCAAACTTGTTGGAGTTTAATCAGTCTTAGCTACAGCATAAATTCGAAGTCTTACAAGTGGTAACTGGAAAGAACTATTGAACATGAACTTAGGGACAGACTGAGAGGATTGAGAGATGACAATTGAATTGTGATCAAGGGAAAAGATGAGGGATGAGAAGGATAGTGCTTGGGTTGTACTACTTCGCTTATGAGTTTCATGGCGATCAATGTATGTATCTCATTATCCTAACTTGACACGATGTTCAACTTGCTACCATATGTAAGGCACCCTGAAAAGCCTGAGAGTATTGGGAGGGAGAGTTGCATCGTACCGTGGGTGGGCTCTATGAGGGAGAGTTTCTCGACTTCTAATTAGAAATGAAAAAAAAACGCCGGGCACCATGGGTGGACTCTAGACTCTCTGCTTAGAGTAGTGTTCTCGAGACATTTATAGATCTCTAGTTCCAAAGACCTCTAAAGTTTAGAATTGTTGGAATCAGGAGAGATATATCTGAATTTTCAATTTTTCTGGAACACGTTTGGATCGAAAGATCTACGAGTAGAATATTCGAGGTTTCTTTCATAACCAATAGGAGGATAATTTGGTGTGCATCTAGACTTGTCTAATGCTACATCTCACAACAGAAACATTCTTAATAGTTCTTTTGAATTCTTGCTCTTGAGGACATTGGTTGTACAGACATTATCCAAAGAAGGAAACGTCATTACTGTACTTTACGTAATTGTCGTTGTCTGTATTAGAGACTCGGAATCTCGAGATCTACTTTTCTTGCATGTTTCTTGACTTAAATCCTTACTGGGGTTCCTTTTGGACACATTTTCATTGCTCATTGGTGTGCCCCTCTTTCAGCTCTTTCAGGATTAGCTCAGTTTTTATTGTTTAATACTGGTTCTATTTGAGTAACTCTATTATCTTTGAGTTTTCATTTTCGCTTCAGATTCATGGTTGCTCTTTTATACTGGTTTGACATTGCTAAAGCCGTACGCATATATGTTCTTTTTTTATAAGAGTCTATGATCTATGATGCTTACAAACGACCTTCCCAATTTACCACGAGAGAGGTATGGCTATAGGAAGCAAAAGTATTAGATAATTTACTGGTAAACAACATTGTACCTAGGATGAGTCTGTGTTTTCTTCGTGAGTACTCTTTGACCATAATGAGGATTGTCCGTGGCCAAACTTTTGCATTCTTTAAAGAGTGGTACGTTAAGACTATATCCAATAACTCCTTTACCTCTCTACAAAACCAATTGCCTATACGGCGGATAAATATGTCCATTGATCCACTCATAGGAGAGAGAGATCACCGGGGTCTTCGAGGCCATTCTTACAAAGACCATGTCAACTAGACTAAGATCATCAGGGTCTTTGAGGCCATTCGTACAAAGACCAACTAGACTAAGATCATCAGGGTCTTCGAGGCCATACGTATAAAGACCAACTAGACTAAGATCATGAGGGTCTTTGAGTTGATTTGTACAAAGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTCATTCGTACAAGGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTCATTCGTACAAGGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTCATTCGTACAAGGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTGATTCGTACAAGGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTCATTCGTACAAGGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTGATTCGTACAAAGACCATGTCAACTAGACTAAGATCATGAGGGTCTTTGAGTTCATTCGTACAAAGACCATGTCAACTAGACTAAGATCATCGGGTCTTCGAGGTCATTCGTACGAAGACCATGTCAACTAGACTAAGGGAAGGCATAGGGTCCTCCATGTTAATACCACCCGAACTCAGCGACCCTATAACAAGTTTGCACCTTTTAGAGATTGAGATTTTCCGAAGGTTCTTGCTATATTGAACTTCTTATTGTCTTCGCTCCTTTCCCGGCAAACAAATTACATAGGTAAGAGGAAGGACAACTAAGAGTTGATAACTATTGCATATTCTTGTAACGTAACAACTTATTTATCGTTAAAAGAGAAGAAATGTATGAAATCCGGAACCTTTGGCTCTACTCTATTATCCGACCTTCCCTTGTGATTTGAAATGAACAAAAAGAAAACTTCATTAACTTATTCTTCTTATTGTACAGGTACTTGATAGCCTCACACACAACTGACTATCAACATCCAATGTTATTTCTCAACACCCTAGCAGTAATCGTACTAGTTATTGCCAAGTTCCCTCATATGCACAAGGTACGCATCTTCGGGATCAACGCAGACAAGTGAAGGTCTCACATGAAGAGATTTTCGGTTCGACTTGCCCAAAACGCTTCTGGTTCGTCTCTCAACCTGGTAAAACGTTATACCTTTGTATAGTAGTTGGGACAGGAAGGATACTGAAAAATTCGTAGTTTTCTTTTTTTTGTACCGACTGCTCGCTCCCTCCGCTTGTTGCTCAATGAATTTAAGTAAATCCAATTATCTTTTCTACAGTGGAGAAATGTTGATGCATTTGAGTTTCACTGTTGTTATTATAAAGTAATTTTTAGGACTACACACTTGAATGGTTCTTGGGTTGGTTCTTCTGCACACAAGAACTCCACCTGCTGGGGACTCACATTCTTACTCTGTTCTTATACATCTCTCATAAATATGAACCTTGATTTTCAGCTCTCA

mRNA sequence

TGTGTTGGGGCGGTGGGTAAGGGTTAGTGCTTTCTTATTATTATCATCAGAGCTTGATTCCCAATTTTAAGCTCTGTTCTTCGATCATTGCCCAACCCCACGAACGAAAGAAACCATACCTAGATAAAAGCCATCTGGGTTTCCTTTCTAATATTTGAACTATTAACCACGCCATCAATCGCTGCGATTTGATTTGCAAATTCCGTTCTTTTTCTTAGTTGATTCCGTAGGAGAGGTTGGATTTTTTCGCATCACCGGTGTTTCGGAGCAAAATCAGAATCTGGGTTGATGGCTAATCTCTATGTCAAGGCTATGCCTCCGGCGGATCTGAATAGGAACACGGAATGGTTTCTTTATCCTGGTGTTTGGACGACTTATATTCTCATTTTGTTCTTCACTTGGCTTCTCGTTCTCTCTGTATTTGGCTGCTCTCCTGGAATGGCCTGGACCATCGTCAATCTATCTCATTTTGCTGTCACTTACCACTGCTTCCACTGGAAGAAAGGGACACCATTTGCTGAAGACCAAGGGATCTACAACAGATTGACATGGTGGGAGCAGATTGATAACGGAAAGCAGCTTACCCGCAACCGAAAATTCTTGACTGTTGTTCCTGTGGTGCTGTACTTGATAGCCTCACACACAACTGACTATCAACATCCAATGTTATTTCTCAACACCCTAGCAGTAATCGTACTAGTTATTGCCAAGTTCCCTCATATGCACAAGGTACGCATCTTCGGGATCAACGCAGACAAGTGAAGGTCTCACATGAAGAGATTTTCGGTTCGACTTGCCCAAAACGCTTCTGGTTCGTCTCTCAACCTGGTAAAACGTTATACCTTTGTATAGTAGTTGGGACAGGAAGGATACTGAAAAATTCGTAGTTTTCTTTTTTTTGTACCGACTGCTCGCTCCCTCCGCTTGTTGCTCAATGAATTTAAGTAAATCCAATTATCTTTTCTACAGTGGAGAAATGTTGATGCATTTGAGTTTCACTGTTGTTATTATAAAGTAATTTTTAGGACTACACACTTGAATGGTTCTTGGGTTGGTTCTTCTGCACACAAGAACTCCACCTGCTGGGGACTCACATTCTTACTCTGTTCTTATACATCTCTCATAAATATGAACCTTGATTTTCAGCTCTCA

Coding sequence (CDS)

ATGGCTAATCTCTATGTCAAGGCTATGCCTCCGGCGGATCTGAATAGGAACACGGAATGGTTTCTTTATCCTGGTGTTTGGACGACTTATATTCTCATTTTGTTCTTCACTTGGCTTCTCGTTCTCTCTGTATTTGGCTGCTCTCCTGGAATGGCCTGGACCATCGTCAATCTATCTCATTTTGCTGTCACTTACCACTGCTTCCACTGGAAGAAAGGGACACCATTTGCTGAAGACCAAGGGATCTACAACAGATTGACATGGTGGGAGCAGATTGATAACGGAAAGCAGCTTACCCGCAACCGAAAATTCTTGACTGTTGTTCCTGTGGTGCTGTACTTGATAGCCTCACACACAACTGACTATCAACATCCAATGTTATTTCTCAACACCCTAGCAGTAATCGTACTAGTTATTGCCAAGTTCCCTCATATGCACAAGGTACGCATCTTCGGGATCAACGCAGACAAGTGA

Protein sequence

MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK

Homology

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BLAST of Carg20906 vs. NCBI nr
Match: XP_022947816.1 (ORM1-like protein 3 [Cucurbita moschata] >XP_022974857.1 ORM1-like protein 3 [Cucurbita maxima] >XP_022975547.1 ORM1-like protein 3 [Cucurbita maxima] >XP_023540703.1 ORM1-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 1.3e-88
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH
Sbjct: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157

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BLAST of Carg20906 vs. NCBI nr
Match: XP_008437865.1 (PREDICTED: ORM1-like protein 3 [Cucumis melo])

HSP 1 Score: 326.2 bits (835), Expect = 5.9e-86
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PPADLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYH FHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157

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BLAST of Carg20906 vs. NCBI nr
Match: XP_004133804.1 (PREDICTED: ORM1-like protein 3 [Cucumis sativus] >KGN56408.1 hypothetical protein Csa_3G119410 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.7e-85
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PP DLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPTDLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYH FHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157

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BLAST of Carg20906 vs. NCBI nr
Match: XP_022147418.1 (ORM1-like protein 3 [Momordica charantia])

HSP 1 Score: 324.7 bits (831), Expect = 1.7e-85
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PPADLNRNTEWFLYPGVWTTYILILFF W+LVLSVFGCSPGMAWTIVNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFAWVLVLSVFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYH FHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLN+LAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNSLAVIVLVIAKFPHMHKVRIFGINADK 157

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BLAST of Carg20906 vs. NCBI nr
Match: XP_022924714.1 (ORM1-like protein 3 [Cucurbita moschata] >XP_022980852.1 ORM1-like protein 3 [Cucurbita maxima] >XP_023527391.1 ORM1-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.3 bits (830), Expect = 2.2e-85
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MA+LYVKA+PPADLNRNTEWFLYPGVWTTYILILFF WLLVLSVFGCSPGMAWTIVNLSH
Sbjct: 1   MASLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFVWLLVLSVFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYH FHWKKGTPFAEDQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGMYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157

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BLAST of Carg20906 vs. TAIR10
Match: AT1G01230.1 (ORMDL family protein)

HSP 1 Score: 295.4 bits (755), Expect = 2.0e-80
Identity = 133/157 (84.71%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PP D+NRNTEWF+YPGVWTTY+LILFF WL+VLSV GCSPGMAWT+VNL+H
Sbjct: 1   MANLYVKAVPPPDMNRNTEWFMYPGVWTTYMLILFFGWLVVLSVSGCSPGMAWTVVNLAH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           F VTYH FHW KGTPFA+DQGIYN LTWWEQ+DNG+QLTRNRKFLT+VPVVLYLIASHTT
Sbjct: 61  FVVTYHSFHWMKGTPFADDQGIYNGLTWWEQMDNGQQLTRNRKFLTLVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DY+HP LFLNTLAV+VLV+AKFP+MHKVRIFGIN DK
Sbjct: 121 DYRHPWLFLNTLAVMVLVVAKFPNMHKVRIFGINGDK 157

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BLAST of Carg20906 vs. TAIR10
Match: AT5G42000.1 (ORMDL family protein)

HSP 1 Score: 294.7 bits (753), Expect = 3.5e-80
Identity = 132/154 (85.71%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 4   LYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAV 63
           +YV+A+P  D+NRNTEWF YPGVWTTYILILFF+WLLVLSVF CSPG+AWTIV+L+HF V
Sbjct: 1   MYVRALPTTDVNRNTEWFTYPGVWTTYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTV 60

Query: 64  TYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 123
           TYH FHWKKGTPF +DQG+YNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ
Sbjct: 61  TYHSFHWKKGTPFGDDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQ 120

Query: 124 HPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           HPMLFLNTLAV V+V+AKFPHMHKVRIFGIN D+
Sbjct: 121 HPMLFLNTLAVFVMVVAKFPHMHKVRIFGINGDQ 154

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BLAST of Carg20906 vs. Swiss-Prot
Match: sp|O42901|YBA9_SCHPO (Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC119.09c PE=2 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 9.5e-27
Identity = 56/139 (40.29%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 15  NRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWKKGT 74
           N N+ W  Y G W  +I+++    L+  ++   S  +AWT+ NL++ A ++  FHW  GT
Sbjct: 33  NYNSNWVNYKGAWVIHIVLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFIMFHWVTGT 92

Query: 75  PFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLNTLAV 134
           PF  + G Y+RLT WEQ+D G Q T  RK+L V+P++L+L+++H T Y   M  +N  A+
Sbjct: 93  PFEFNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFLMSTHYTHYNGWMFLVNIWAL 152

Query: 135 IVLVIAKFPHMHKVRIFGI 154
            +++I K P +H+ RIFGI
Sbjct: 153 FMVLIPKLPAVHRKRIFGI 171

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BLAST of Carg20906 vs. Swiss-Prot
Match: sp|Q921I0|ORML1_MOUSE (ORM1-like protein 1 OS=Mus musculus OX=10090 GN=Ormdl1 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 61/144 (42.36%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 12  ADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWK 71
           +++N NT      G+W TY L +    +++LS+  CS  +AWT+ N+ H    Y   H  
Sbjct: 8   SEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFCSVPVAWTLTNIIHNLGMYVFLHAV 67

Query: 72  KGTPF-AEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLN 131
           KGTPF   DQG    LT WEQ+D G Q T +RKF T+ P++LY +AS  T Y      LN
Sbjct: 68  KGTPFETPDQGRARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFILN 127

Query: 132 TLAVIVLVIAKFPHMHKVRIFGIN 155
           T +++ ++I K P +H VRIFGIN
Sbjct: 128 TASLLSVLIPKMPQLHGVRIFGIN 151

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BLAST of Carg20906 vs. Swiss-Prot
Match: sp|Q9CPZ6|ORML3_MOUSE (ORM1-like protein 3 OS=Mus musculus OX=10090 GN=Ormdl3 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 12  ADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWK 71
           +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H    Y   H  
Sbjct: 8   SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYIFLHTV 67

Query: 72  KGTPF-AEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLN 131
           KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y      LN
Sbjct: 68  KGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILN 127

Query: 132 TLAVIVLVIAKFPHMHKVRIFGIN 155
           T++++ ++I K P +H VRIFGIN
Sbjct: 128 TVSLMTVLIPKLPQLHGVRIFGIN 151

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BLAST of Carg20906 vs. Swiss-Prot
Match: sp|Q6QI25|ORML3_RAT (ORM1-like protein 3 OS=Rattus norvegicus OX=10116 GN=Ormdl3 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 12  ADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWK 71
           +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H    Y   H  
Sbjct: 8   SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYIFLHTV 67

Query: 72  KGTPF-AEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLN 131
           KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y      LN
Sbjct: 68  KGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILN 127

Query: 132 TLAVIVLVIAKFPHMHKVRIFGIN 155
           T++++ ++I K P +H VRIFGIN
Sbjct: 128 TVSLMSVLIPKLPQLHGVRIFGIN 151

[Close]

BLAST of Carg20906 vs. Swiss-Prot
Match: sp|D2I2F3|ORML3_AILME (ORM1-like protein 3 OS=Ailuropoda melanoleuca OX=9646 GN=ORMDL3 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 12  ADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWK 71
           +++N NT      G+W +Y+L +    +++LS+   S  + WT+ NL H    Y   H  
Sbjct: 8   SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNTGMYIFLHTV 67

Query: 72  KGTPF-AEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLN 131
           KGTPF   DQG    LT WEQ+D G Q T +RKFLT+ P+VLY + S  T Y      LN
Sbjct: 68  KGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQIHFVLN 127

Query: 132 TLAVIVLVIAKFPHMHKVRIFGIN 155
           T++++ ++I K P +H VRIFGIN
Sbjct: 128 TVSLMSVLIPKLPQLHGVRIFGIN 151

[Close]

BLAST of Carg20906 vs. TrEMBL
Match: tr|A0A1S3AVL5|A0A1S3AVL5_CUCME (ORM1-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103483168 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 3.9e-86
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PPADLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYH FHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157

[Close]

BLAST of Carg20906 vs. TrEMBL
Match: tr|A0A0A0L3T2|A0A0A0L3T2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119410 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.1e-85
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PP DLNRNTEWF+YPGVWTTYILILFF WLLVLSVFGCSPGMAWT+VNLSH
Sbjct: 1   MANLYVKAVPPTDLNRNTEWFMYPGVWTTYILILFFAWLLVLSVFGCSPGMAWTVVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           FAVTYH FHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FAVTYHFFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157

[Close]

BLAST of Carg20906 vs. TrEMBL
Match: tr|A0A061DTH4|A0A061DTH4_THECC (ORMDL family protein OS=Theobroma cacao OX=3641 GN=TCM_005108 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 8.2e-84
Identity = 148/157 (94.27%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PPADLNRNTEWF+YPGVWTTYILILFF+WLLVLS+FGCSPGMAWTIVNLSH
Sbjct: 1   MANLYVKAVPPADLNRNTEWFMYPGVWTTYILILFFSWLLVLSIFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           F VTYH FHWKKGTPFAEDQGIYN LTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FLVTYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAV+VLVIAKFP+MHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVLVLVIAKFPNMHKVRIFGINADK 157

[Close]

BLAST of Carg20906 vs. TrEMBL
Match: tr|A0A1R3H1R7|A0A1R3H1R7_COCAP (ORMDL family protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21928 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.1e-83
Identity = 147/157 (93.63%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MAN YVKA+PPADLNRNTEWF+YPGVWTTYILILFF+WL+VLS+FGCSPGMAWTIVNLSH
Sbjct: 1   MANYYVKAVPPADLNRNTEWFMYPGVWTTYILILFFSWLIVLSIFGCSPGMAWTIVNLSH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           F VTYH FHWKKGTPFAEDQGIYN LTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FLVTYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLFLNTLAVIVLVIAKFP+MHKVRIFGINADK
Sbjct: 121 DYQHPMLFLNTLAVIVLVIAKFPNMHKVRIFGINADK 157

[Close]

BLAST of Carg20906 vs. TrEMBL
Match: tr|A0A0B0MEV4|A0A0B0MEV4_GOSAR (ORM1-like protein 1 OS=Gossypium arboreum OX=29729 GN=F383_12486 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 4.0e-83
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSH 60
           MANLYVKA+PPADLNRNTEWFLYPGVWTTYILILFF+WLLVLS+FGCSPGMAWT+VNL+H
Sbjct: 1   MANLYVKAVPPADLNRNTEWFLYPGVWTTYILILFFSWLLVLSIFGCSPGMAWTVVNLAH 60

Query: 61  FAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120
           F VTYH FHWKKGTPFAEDQGIYN LTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT
Sbjct: 61  FLVTYHFFHWKKGTPFAEDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTT 120

Query: 121 DYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 158
           DYQHPMLF NTLAV+VLVIAKFP+MHKVRIFGINADK
Sbjct: 121 DYQHPMLFFNTLAVLVLVIAKFPNMHKVRIFGINADK 157

The following BLAST results are available for this feature:

BLAST of Carg20906 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947816.1	1.3e-88	100.00	ORM1-like protein 3 [Cucurbita moschata] >XP_022974857.1 ORM1-like protein 3 [Cu...	[more]
XP_008437865.1	5.9e-86	96.82	PREDICTED: ORM1-like protein 3 [Cucumis melo]	[more]
XP_004133804.1	1.7e-85	96.18	PREDICTED: ORM1-like protein 3 [Cucumis sativus] >KGN56408.1 hypothetical protei...	[more]
XP_022147418.1	1.7e-85	96.82	ORM1-like protein 3 [Momordica charantia]	[more]
XP_022924714.1	2.2e-85	96.82	ORM1-like protein 3 [Cucurbita moschata] >XP_022980852.1 ORM1-like protein 3 [Cu...	[more]

BLAST of Carg20906 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01230.1	2.0e-80	84.71	ORMDL family protein	[more]
AT5G42000.1	3.5e-80	85.71	ORMDL family protein	[more]

BLAST of Carg20906 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O42901\|YBA9_SCHPO	9.5e-27	40.29	Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
sp\|Q921I0\|ORML1_MOUSE	1.5e-24	42.36	ORM1-like protein 1 OS=Mus musculus OX=10090 GN=Ormdl1 PE=2 SV=1	[more]
sp\|Q9CPZ6\|ORML3_MOUSE	1.5e-24	41.67	ORM1-like protein 3 OS=Mus musculus OX=10090 GN=Ormdl3 PE=2 SV=1	[more]
sp\|Q6QI25\|ORML3_RAT	2.6e-24	41.67	ORM1-like protein 3 OS=Rattus norvegicus OX=10116 GN=Ormdl3 PE=2 SV=2	[more]
sp\|D2I2F3\|ORML3_AILME	3.4e-24	41.67	ORM1-like protein 3 OS=Ailuropoda melanoleuca OX=9646 GN=ORMDL3 PE=3 SV=1	[more]

BLAST of Carg20906 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVL5\|A0A1S3AVL5_CUCME	3.9e-86	96.82	ORM1-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103483168 PE=4 SV=1	[more]
tr\|A0A0A0L3T2\|A0A0A0L3T2_CUCSA	1.1e-85	96.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119410 PE=4 SV=1	[more]
tr\|A0A061DTH4\|A0A061DTH4_THECC	8.2e-84	94.27	ORMDL family protein OS=Theobroma cacao OX=3641 GN=TCM_005108 PE=4 SV=1	[more]
tr\|A0A1R3H1R7\|A0A1R3H1R7_COCAP	3.1e-83	93.63	ORMDL family protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21928 PE=4 SV=...	[more]
tr\|A0A0B0MEV4\|A0A0B0MEV4_GOSAR	4.0e-83	92.99	ORM1-like protein 1 OS=Gossypium arboreum OX=29729 GN=F383_12486 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005789	endoplasmic reticulum membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR007203	ORMDL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20906-RA	Carg20906-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007203	ORMDL family	PIRSF	PIRSF018147	ORM1	coord: 3..157 e-value: 3.5E-64 score: 214.0
IPR007203	ORMDL family	PFAM	PF04061	ORMDL	coord: 15..149 e-value: 1.9E-51 score: 173.3
IPR007203	ORMDL family	PANTHER	PTHR12665	ORMDL PROTEINS	coord: 1..157
None	No IPR available	PANTHER	PTHR12665:SF14	SUBFAMILY NOT NAMED	coord: 1..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20906	Cla021139	Watermelon (97103) v1	carwmB0992
Carg20906	Csa3G119410	Cucumber (Chinese Long) v2	carcuB1007
Carg20906	MELO3C006007	Melon (DHL92) v3.5.1	carmeB0968
Carg20906	ClCG05G000680	Watermelon (Charleston Gray)	carwcgB0968
Carg20906	CSPI03G07770	Wild cucumber (PI 183967)	carcpiB1031
Carg20906	Cucsa.259390	Cucumber (Gy14) v1	carcgyB1110
Carg20906	CmaCh06G009760	Cucurbita maxima (Rimu)	carcmaB1376
Carg20906	CmaCh14G021200	Cucurbita maxima (Rimu)	carcmaB1373
Carg20906	CmoCh06G010280	Cucurbita moschata (Rifu)	carcmoB1332
Carg20906	CmoCh14G021820	Cucurbita moschata (Rifu)	carcmoB1330
Carg20906	Lsi05G021400	Bottle gourd (USVL1VR-Ls)	carlsiB907
Carg20906	Cp4.1LG03g15830	Cucurbita pepo (Zucchini)	carcpeB1379
Carg20906	Cp4.1LG08g00740	Cucurbita pepo (Zucchini)	carcpeB1380
Carg20906	CsGy3G007900	Cucumber (Gy14) v2	carcgybB0980
Carg20906	MELO3C006007.2	Melon (DHL92) v3.6.1	carmedB0978
Carg20906	CsaV3_3G007890	Cucumber (Chinese Long) v3	carcucB1037
Carg20906	Cla97C05G080780	Watermelon (97103) v2	carwmbB1047
Carg20906	Bhi01G000372	Wax gourd	carwgoB1162

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20906	Carg25706	Silver-seed gourd	carcarB146

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20906	Watermelon (97103) v2	carwmbB1044
Carg20906	Cucurbita maxima (Rimu)	carcmaB1371