Carg25138 (gene) Silver-seed gourd

Overview
NameCarg25138
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionF-box protein
LocationCucurbita_argyrosperma_scaffold_200 : 50390 .. 52694 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCAACGGTCAATCCAGTGGATAATCGAGCGCCATGAGAGATCAGAACGCCATCGTGGCGACTGGAGCTCAGATTCTTGTAATGGTGGCGATATGAAGCCAGTATCCACTCTCTCTCTCTCCTTTCCCCTGTAGAATCTTCCGCCTGCTCTTTTTTTGGTTCTCCTGTGCAGTAACGAGTTGAACGCTTGACTTTTCTCCGCACGTTTTGGGTTTTCGACACTGCGTCAAACGATAAACTTCTGGAGGAGGAGTGGAGAGGAATGAGTTCGGGTGATATGTGGCCGATCGAGATGGAGTTGGAGCCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGTAATCGATGCTAATTTCTGCTTATGAATGTCTTTTTGTTCGATTAATTTTGTTATTGTTCCTAATTTTGGGGGTTTCTGCGAATATTTGCCGGAAAAAACGCAGGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATGTAATTCCTCTTTCCTTCTAGAATTTCAGTTTTCTTAAGAAAATTGCTTCTGTTTGCTTCTCTTCAAGTGGATTCTGATTACGGATGGTTAATTTTGGTATTGGTGTTGTGATCTGGGAGACAAAGCGAGTTTTTCGACATTGCATGGATAATCAATTCAATTAGACTTCGATTTTCATTTTCTGTTTATCCTTAGTCAGGCAACTTGATTATGAACCACGCAAACGGAGGTTTCTCTTAAGATTTGAGTCTTAGAACGTAAGATGAGATGTTGTTTGGGCGTACTTCTGGAGAAAGTTCTTTAAAATTGTTCTATAAAGCTTTGTTATGTTCTTGGTGGTTATAGCTCATGTTCTTGGTTGAGTTATTCTCAAATAAGGGAACATTATGAGAGTAACTCAAAGGATATGAGATAAAACAGAGTATATGTATCAAAGCTTGGTTGTTTGCATCGTTTCCAAGTAGTCCACGGCCATGGCTGTCTTTGTTGTTCTTGTGTCGACTCGAGCAAAATGCCGACTAATCCATCATTCTCTTGTAATTATGTGTTTTTCAGCTCAAGAAGCCGTTGGGGTTGTCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTTGTGCAGCTGGTATGATATTATCTTATCTCCAGACCAATTATGCCTAAAGAAATAGCCCTTAAAATCAGCCTGAATCTGTAAACTAGAGTATGAGTTAAGCTGGAAATTGAACTAGTAAATTTAAGTATTACATGTTCTTGGAGGATTTCTGTTGTTCATATCTTCATTTCTCTGTTCCAATAAGTTTTCAGTATTGTCAAACTCCTCAGGATCTTCTTGAATCCATCTTCGAAAACTAAGCATCAGGTTAAGAAACCATTTTTTTTTTCTCTGCTTCAGAAGTTTTGTTAAGGCCAAGGGTGATTTGTGGAAGTACGTTTCCACTTGTTCTTAAAACTAGCTCTTCATAAGAGAAAAAACAAGAAACAACTTTCAAAAAATATTAATCCAGACATGTTTCACTTCATTTTTTGTTCTATAATGCAGAAAAAACTAAAAGCTATTATGAAACAGCTCCTAAATAGCCTCTTAAGCATTCCCATTTAATGTTTTGATGTCTACGTAGTTCATTCTAAGACTGCATTTGGTTCTATTTCCAGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGGTGACCATGTCTTCCAATAGAGTGTTAATCATATGCTATACTTATATGTCTCGCCCGATCTTTAATCGGCACATATCTTTATGTATTCTGCAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGATTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGTCTGTTCTGTGAAATATGCTTAAATATTCGCATCCTGTAAAAGCTTCTATTGTATGCATGTCTTCA

mRNA sequence

AATTTCAACGGTCAATCCAGTGGATAATCGAGCGCCATGAGAGATCAGAACGCCATCGTGGCGACTGGAGCTCAGATTCTTGTAATGGTGGCGATATGAAGCCAGTATCCACTCTCTCTCTCTCCTTTCCCCTGTAGAATCTTCCGCCTGCTCTTTTTTTGGTTCTCCTGTGCAGTAACGAGTTGAACGCTTGACTTTTCTCCGCACGTTTTGGGTTTTCGACACTGCGTCAAACGATAAACTTCTGGAGGAGGAGTGGAGAGGAATGAGTTCGGGTGATATGTGGCCGATCGAGATGGAGTTGGAGCCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATCTCAAGAAGCCGTTGGGGTTGTCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTTGTGCAGCTGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGATTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGTCTGTTCTGTGAAATATGCTTAAATATTCGCATCCTGTAAAAGCTTCTATTGTATGCATGTCTTCA

Coding sequence (CDS)

ATGAGTTCGGGTGATATGTGGCCGATCGAGATGGAGTTGGAGCCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATCTCAAGAAGCCGTTGGGGTTGTCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTTGTGCAGCTGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGATTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGTCTGTTCTGTGA

Protein sequence

MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL
Homology
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BLAST of Carg25138 vs. NCBI nr
Match: XP_022947259.1 (F-box protein At5g67140 [Cucurbita moschata])

HSP 1 Score: 417.9 bits (1073), Expect = 2.2e-113
Identity = 232/233 (99.57%), Postives = 232/233 (99.57%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE
Sbjct: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMW VL
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]
BLAST of Carg25138 vs. NCBI nr
Match: XP_023006941.1 (F-box protein At5g67140 [Cucurbita maxima])

HSP 1 Score: 414.8 bits (1065), Expect = 1.9e-112
Identity = 231/233 (99.14%), Postives = 231/233 (99.14%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           MSSGDMWPIEMELE EIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE
Sbjct: 1   MSSGDMWPIEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMW VL
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]
BLAST of Carg25138 vs. NCBI nr
Match: XP_023533904.1 (F-box protein At5g67140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.5 bits (1059), Expect = 9.3e-112
Identity = 230/233 (98.71%), Postives = 230/233 (98.71%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           MSS DMWPIEMELE EIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE
Sbjct: 1   MSSSDMWPIEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMW VL
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]
BLAST of Carg25138 vs. NCBI nr
Match: XP_004149695.1 (PREDICTED: F-box protein At5g67140-like [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_2G279180 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S  +W +EMELEPEIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGC ITDHGL+EISLAKCIPNLKSISL
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 123

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRH XXX
Sbjct: 124 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVXXX 183

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXX VPVDCFIGLVAISPSLQIKSRS LLNSMWSV+
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXRVPVDCFIGLVAISPSLQIKSRS-LLNSMWSVV 235

[Close]
BLAST of Carg25138 vs. NCBI nr
Match: XP_008457759.1 (PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902142.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902143.1 PREDICTED: F-box protein At5g67140 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101
Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S  +W +EMELEPEIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRH XXX
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXX VPVDCFIGLVAISPSLQIKSRS LLNSMW V+
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXRVPVDCFIGLVAISPSLQIKSRS-LLNSMWPVV 232

[Close]
BLAST of Carg25138 vs. TAIR10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein)

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-73
Identity = 156/218 (71.56%), Postives = 187/218 (85.78%), Query Frame = 0 

Query: 11  MELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           M+ E  IDRLP+DLLA+IF++  SFT LAQA GVC+KW++ V  S+ RRE+LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D ST+RL+H A++L++LDISRSRWGC ITD+GL++I+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXXXXXXXXXXXX 190
           VVQLISR +SLQ+LNIGGTF+TD SLFAIA+ C  LKTIG+W CRHXXXXXXXXXXXXXX
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHXXXXXXXXXXXXXX 180

Query: 191 XXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNS 229
           XXXXXXXXXXXVPVDCFI L+ ISP+LQIK   LLLN+
Sbjct: 181 XXXXXXXXXXXVPVDCFIALLTISPALQIKPMELLLNA 218

[Close]
BLAST of Carg25138 vs. TAIR10
Match: AT4G05490.1 (RNI-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-05
Identity = 44/161 (27.33%), Postives = 66/161 (40.99%), Query Frame = 0 

Query: 20  LPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSL-GRRESLSFAGWKMDDYSTARLI 79
           LP DLL+ I   +     L  A  VCR W+   K  L  RR  +         Y+     
Sbjct: 30  LPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCIYAMEACC 89

Query: 80  HHAYSLRQ---LDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLI 139
            H   L Q   L+ +  +W  Q T    +   +A+   NL+ + + G   IT  G+ + I
Sbjct: 90  RHVVDLSQGGLLEFNIDQWRFQTTSLLNY---MAERSSNLRRLRVKG-GQITSVGIFEAI 149

Query: 140 SRANSLQNLNIGGTFVTDVSLFAIADNCPNLKT---IGLWS 174
            +   L+ L +    + +     I   CPNLKT   +G WS
Sbjct: 150 VKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLVGFWS 186

[Close]
BLAST of Carg25138 vs. TAIR10
Match: AT1G47056.1 (VIER F-box proteine 1)

HSP 1 Score: 45.4 bits (106), Expect = 5.4e-05
Identity = 47/176 (26.70%), Postives = 74/176 (42.05%), Query Frame = 0 

Query: 7   WPIEMELEPEIDR------LPIDLLAHIFAMIPSFTDLAQACGVCRKW-----KEGVKLS 66
           +PIE  +E EI +      LP + LA +F  + S  +  +   VCR+W     +   +LS
Sbjct: 25  FPIE-SIESEISQPDYTSSLPDECLALVFQFLNS-GNRKRCALVCRRWMIVEGQNRYRLS 84

Query: 67  LGRRESLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNL 126
           L  R  L          S   L     S+ +L +   R    I D  L +ISL +C  NL
Sbjct: 85  LHARSDLI--------TSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISL-RC-RNL 144

Query: 127 KSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGL 172
           K + L     +TD G+         L+  + G        + A+ D+C NL+ + +
Sbjct: 145 KRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSI 188

[Close]
BLAST of Carg25138 vs. TAIR10
Match: AT4G05460.1 (RNI-like superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 48/182 (26.37%), Postives = 78/182 (42.86%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEID--RLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVK-LSLG 60
           M+S    P  ME+    +   LP +L + I   + +   L  A  VCR W+   K  S+ 
Sbjct: 1   MASSSSPPAAMEVGESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMW 60

Query: 61  RRESLSFAGWKMD-DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEIS-------LA 120
           R+  +   G   D DY+   +  HA       + RS+ G  + D G+           +A
Sbjct: 61  RKIDMHNLGDLDDMDYNLEIMCRHA-------VDRSQGG--LVDIGIWYFGTVDLLNYIA 120

Query: 121 KCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTI 172
               NL+S+ L   + ITD G V+ + +   L+ L +     +  SL  +   C N+KT+
Sbjct: 121 HRSSNLRSLRLIRCSQITDDGFVEAVVKL-PLEELELSYCSFSVESLRVVGQCCLNMKTL 172

[Close]
BLAST of Carg25138 vs. Swiss-Prot
Match: sp|Q9FH99|FB302_ARATH (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.9e-72
Identity = 156/218 (71.56%), Postives = 187/218 (85.78%), Query Frame = 0 

Query: 11  MELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           M+ E  IDRLP+DLLA+IF++  SFT LAQA GVC+KW++ V  S+ RRE+LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D ST+RL+H A++L++LDISRSRWGC ITD+GL++I+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXXXXXXXXXXXX 190
           VVQLISR +SLQ+LNIGGTF+TD SLFAIA+ C  LKTIG+W CRHXXXXXXXXXXXXXX
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHXXXXXXXXXXXXXX 180

Query: 191 XXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNS 229
           XXXXXXXXXXXVPVDCFI L+ ISP+LQIK   LLLN+
Sbjct: 181 XXXXXXXXXXXVPVDCFIALLTISPALQIKPMELLLNA 218

[Close]
BLAST of Carg25138 vs. Swiss-Prot
Match: sp|Q6BIN3|AMN1_DEBHA (Antagonist of mitotic exit network protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=AMN1 PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 8.8e-05
Identity = 27/84 (32.14%), Postives = 40/84 (47.62%), Query Frame = 0 

Query: 95  GCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIG----GTF 154
           G ++ D G   +   KC PNL+ + +     I+D G+         L  +N G    G  
Sbjct: 322 GSKVIDDGFLSMVAKKC-PNLEVLDIRACELISDSGIYXXXXXXTKLTTVNFGRKNKGNL 381

Query: 155 VTDVSLFAIADNCPNLKTIGLWSC 175
           +TD S+  +  N PNLKT+GL  C
Sbjct: 382 ITDSSICILIRNNPNLKTVGLAGC 404

[Close]
BLAST of Carg25138 vs. TrEMBL
Match: tr|A0A0A0LPU5|A0A0A0LPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 2.2e-101
Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S  +W +EMELEPEIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGC ITDHGL+EISLAKCIPNLKSISL
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 123

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRH XXX
Sbjct: 124 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVXXX 183

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXX VPVDCFIGLVAISPSLQIKSRS LLNSMWSV+
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXRVPVDCFIGLVAISPSLQIKSRS-LLNSMWSVV 235

[Close]
BLAST of Carg25138 vs. TrEMBL
Match: tr|A0A1S4E1P2|A0A1S4E1P2_CUCME (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.9e-101
Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0 

Query: 1   MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S  +W +EMELEPEIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXX 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRH XXX
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL 234
           XXXXXXXXXXXXXXXXXXXX VPVDCFIGLVAISPSLQIKSRS LLNSMW V+
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXRVPVDCFIGLVAISPSLQIKSRS-LLNSMWPVV 232

[Close]
BLAST of Carg25138 vs. TrEMBL
Match: tr|A0A2P5D1H3|A0A2P5D1H3_9ROSA (F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_265200 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.3e-80
Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 0 

Query: 11  MELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME E EIDRLPIDLLAHIF  I SFTDLAQA  VCRKWK+GVK SL  RE+LSFAGWKMD
Sbjct: 1   MEAEAEIDRLPIDLLAHIFVRITSFTDLAQASSVCRKWKKGVKQSLASRENLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARL+ HAYSL++LDISRSRWGCQI+D+GL++ISLAKC+ NL SISLWGM GITDKG
Sbjct: 61  DDSTARLVRHAYSLKELDISRSRWGCQISDNGLYQISLAKCVSNLTSISLWGMTGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXXXXXXXXXXXX 190
           VVQLI+RANSLQ+LNIGGTF+TD SLF IAD+CP LKTI LWSCRHXXXXXXXXXXXXXX
Sbjct: 121 VVQLITRANSLQHLNIGGTFITDESLFVIADSCPQLKTIVLWSCRHXXXXXXXXXXXXXX 180

Query: 191 XXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLN 228
           XXXXXXXXXXX PVDCFI L+ ISP+LQIKSR LLLN
Sbjct: 181 XXXXXXXXXXXXPVDCFIALLTISPALQIKSRGLLLN 217

[Close]
BLAST of Carg25138 vs. TrEMBL
Match: tr|W9SXB4|W9SXB4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001772 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 2.8e-80
Identity = 170/216 (78.70%), Postives = 189/216 (87.50%), Query Frame = 0 

Query: 11  MELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME E EIDRLPIDLLAHIFAMI SFTDLAQA  VCRKWK+GVK SLGRRE+LSFAGWKMD
Sbjct: 1   MEGEAEIDRLPIDLLAHIFAMITSFTDLAQASSVCRKWKKGVKQSLGRRENLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARL+ HAYSL++LDISRSRWGCQI+D+GL++ISLAKC+ NL SISLWGM GITDKG
Sbjct: 61  DDSTARLVRHAYSLKELDISRSRWGCQISDNGLYQISLAKCVSNLTSISLWGMTGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXXXXXXXXXXXX 190
           V+QLISRA SL++LNIGGTF+TD SL+AIAD CP LK+I LWSCRH      XXXXXXXX
Sbjct: 121 VLQLISRAKSLRHLNIGGTFITDESLYAIADGCPQLKSIVLWSCRHVSENGLXXXXXXXX 180

Query: 191 XXXXXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLL 227
           XXXXXXXXX  VPVDCFI L+ I P+LQIK+RSLLL
Sbjct: 181 XXXXXXXXXTRVPVDCFIVLLTIRPALQIKTRSLLL 216

[Close]
BLAST of Carg25138 vs. TrEMBL
Match: tr|A0A2N9FF16|A0A2N9FF16_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13321 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 2.8e-80
Identity = 179/223 (80.27%), Postives = 197/223 (88.34%), Query Frame = 0 

Query: 14  EPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMDDYS 73
           E EIDRLPIDLLAHIF +I SFTDLAQA  VC+KWK+GVK SL RRE+LSFAGWKMDD S
Sbjct: 4   EAEIDRLPIDLLAHIFVLIISFTDLAQARSVCKKWKQGVKQSLARRETLSFAGWKMDDDS 63

Query: 74  TARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQ 133
           T R++ HAY+L++LDISRSRWGCQI+D+GL EISL KC+ NL SISLWGM GITDKGVVQ
Sbjct: 64  TVRIVRHAYNLKELDISRSRWGCQISDNGLREISLVKCVSNLTSISLWGMTGITDKGVVQ 123

Query: 134 LISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHXXXXXXXXXXXXXXXXX 193
           LISRANSLQ+LNIGGTF+TD SLFAIA+NCP LKTI LWSCRHXXXXXXXXXXXXXXXXX
Sbjct: 124 LISRANSLQHLNIGGTFITDESLFAIANNCPQLKTIVLWSCRHXXXXXXXXXXXXXXXXX 183

Query: 194 XXXXXXXXVPVDCFIGLVAISPSLQIKSRSLLLN----SMWSV 233
           XXXXXXXX PVDCFIGL+AISP+LQIK R LLLN    S+W V
Sbjct: 184 XXXXXXXXXPVDCFIGLLAISPALQIKWRGLLLNVGSTSLWPV 226

The following BLAST results are available for this feature:
BLAST of Carg25138 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947259.12.2e-11399.57F-box protein At5g67140 [Cucurbita moschata][more]
XP_023006941.11.9e-11299.14F-box protein At5g67140 [Cucurbita maxima][more]
XP_023533904.19.3e-11298.71F-box protein At5g67140 [Cucurbita pepo subsp. pepo][more]
XP_004149695.13.3e-10191.42PREDICTED: F-box protein At5g67140-like [Cucumis sativus] >KGN61981.1 hypothetic... [more]
XP_008457759.14.3e-10191.42PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-b... [more]
BLAST of Carg25138 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67140.11.6e-7371.56F-box/RNI-like superfamily protein[more]
AT4G05490.13.2e-0527.33RNI-like superfamily protein[more]
AT1G47056.15.4e-0526.70VIER F-box proteine 1[more]
AT4G05460.12.1e-0426.37RNI-like superfamily protein[more]
BLAST of Carg25138 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FH99|FB302_ARATH2.9e-7271.56F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1[more]
sp|Q6BIN3|AMN1_DEBHA8.8e-0532.14Antagonist of mitotic exit network protein 1 OS=Debaryomyces hansenii (strain AT... [more]
BLAST of Carg25138 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPU5|A0A0A0LPU5_CUCSA2.2e-10191.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1[more]
tr|A0A1S4E1P2|A0A1S4E1P2_CUCME2.9e-10191.42F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1[more]
tr|A0A2P5D1H3|A0A2P5D1H3_9ROSA1.3e-8082.03F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_26520... [more]
tr|W9SXB4|W9SXB4_9ROSA2.8e-8078.70Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001772 PE=4 SV=1[more]
tr|A0A2N9FF16|A0A2N9FF16_FAGSY2.8e-8080.27Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13321 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
IPR032675LRR_dom_sf
IPR006553Leu-rich_rpt_Cys-con_subtyp
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25138-RACarg25138-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 112..137
e-value: 1.4
score: 17.9
coord: 163..188
e-value: 1.6E-4
score: 31.0
coord: 138..162
e-value: 12.0
score: 13.9
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 12..226
e-value: 1.1E-34
score: 121.9
IPR001810F-box domainPFAMPF12937F-box-likecoord: 17..50
e-value: 2.0E-6
score: 27.5
NoneNo IPR availablePANTHERPTHR45100FAMILY NOT NAMEDcoord: 12..228
NoneNo IPR availableSUPERFAMILYSSF52047RNI-likecoord: 71..217
IPR036047F-box-like domain superfamilySUPERFAMILYSSF81383F-box domaincoord: 16..50