Cp4.1LG05g11740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g11740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionF-box family protein
LocationCp4.1LG05 : 7900213 .. 7902210 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGAGTGATATGTGGCCGATCGAGATGGAGTTGGAGGCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGTAATCGATGCTAATTTCTGCTTATGAATGTCTTTTTGTTCGATTAATTTTGTTATTGTTCCTAATTTTGGGGGTTTCTGCGAATATTTTCCGGAAAAAACGCAGGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATGTAATTCCTCTTTCCTTCTAGAATTTCAGTTTTCTTAAGAAAATTGCTTCTGTTTGCTTTTCTTCAAGTGGATTCTGATTACGGATGGTTAATTTTGGTATTGGTGTTGTGATCTGGGAGACAAAGCGAGTTTTTCGACATTGCATGGATAATCAATTCAATTAGACTTCGATTTTCATTCTCTGTTTATCATTACTCAGGCAACTTGATTATGAACCACGCAAACGGAGGTTTCTCTTAAGATTTGAGTCTTAGAACGTAAGATGAGATGTTGTTTGGGCGTACTTCTGGAGAAAGTTCTTTAAAATTGTTCTATAAAGCTTTGTTATGGTCTTGTTGGTTATAGCTCGTGTTTTTGCTTGAGTTATTCTCAAATAAGGGAACATTATGAGAGTAACTCAAAGGATATGAGATAAAACAGAGTCTATGTATCAAAATAAGAACAAAGCTTGGTTGTTTGCATCGTTTCCAAGTAGTCCATGGCCATAGCTGTCTTCGTTGTTCTTGTATCGACTCGAGCAAAATGCCAATAATCCATCATTCTCTTGTAATTATGTGTTTTGTCAGCTCAAGAAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTGGTGCAGCTGGTATGATATTATCTTATCTCCAGACCAATTATGCCTAAAGAATTAGCCCTCAAAATCAGCTGAATCTGTAAACTAGAGTATGAGTTAAGCTGGAAATTGAACTAGTAAATTTAAGTGTTACATGTTCTTGGAGGATTTCTGTTGTTCATATCTTCATTTCTCTGTTCCAATAAGTTTTCAGTATTGTCAAATTCCTCAGGATCTTCTTGAATCCACCTTCGAAAACTAAGCACCAGGTTAAGAAACCATTTTTTTTTTTGTCTCTGCTTCAGAATTTTTGTTAAGGCCAAGGTGATTTGTGGAAGTACGTTTCCACTTGTTCTTAAAAGTAGCTCTTCATTAGAGAAAAAACAAGAAACAACTTTCAAAAAATATTAATCCAGACATGTTTCACTTCATTGTTTGTTCTATAATGCAGAAAAAACTAAAAGCTATTATGAAACAGCTCCTAAATAGCCTCTTAAGCATTCCCATTTAATATTTTGATGTCTACGTAGTTCATTCTAAGACTGCATTTGGTTCTATTTCCAGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGGTGACCATGTCTTGCAATAGAGTGTTAATCATACGATATACTTATATGTCTCGCACCATCTTTAATTGGCACATTTCTTTATGTATTCTGCAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGCCTGTTCTGTGA

mRNA sequence

ATGAGTTCGAGTGATATGTGGCCGATCGAGATGGAGTTGGAGGCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATCTCAAGAAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTGGTGCAGCTGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGCCTGTTCTGTGA

Coding sequence (CDS)

ATGAGTTCGAGTGATATGTGGCCGATCGAGATGGAGTTGGAGGCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATCTCAAGAAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTGGTGCAGCTGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGCCTGTTCTGTGA

Protein sequence

MSSSDMWPIEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL
Homology
[Close]
BLAST of Cp4.1LG05g11740 vs. Swiss-Prot
Match: FB302_ARATH (F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.4e-89
Identity = 153/221 (69.23%), Postives = 187/221 (84.62%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           M+ EA IDRLP+DLLA+IF++  SFT LAQA GVC+KW++ V  S+ RRE+LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D ST+RL+H A++L++LDISRSRWGC ITD+GL++I+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VVQLISR +SLQ+LNIGGTF+TD SLFAIA+ C  LKTIG+W CRHVTE GLL+LV+KCR
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWP 232
           KLESIN+WG RVPVDCFI L+ ISP+LQIK   LLLN+  P
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELLLNAQNP 221

[Close]
BLAST of Cp4.1LG05g11740 vs. Swiss-Prot
Match: SKP2B_ARATH (F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-12
Identity = 56/216 (25.93%), Postives = 105/216 (48.61%), Query Frame = 1 

Query: 9   IEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVK--------------- 68
           +E  L +E   +P++LL  I  ++   T +  +C +C  W++ V                
Sbjct: 20  MEGVLISEWKDIPVELLMKILNLVDDRTVIIASC-ICSGWRDAVSLGLTRLSLSWCKKNM 79

Query: 69  ----LSLGRR----ESLSFAGWK--MDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGL 128
               LSL  +    ++L     K  ++D +   + +H + L+ LD+S+S    +ITDH L
Sbjct: 80  NSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSS---KITDHSL 139

Query: 129 HEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTF--VTDVSLFAIAD 188
           +  SLA+   NL  ++L G    +D  +  L      L+ LN+ G    V+D +L AI +
Sbjct: 140 Y--SLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGE 199

Query: 189 NCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINV 198
           NC  L+++ L  C ++++ G++ L   C  L ++++
Sbjct: 200 NCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDL 229

[Close]
BLAST of Cp4.1LG05g11740 vs. Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 97  QITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTDVS 156
           +++D GL   S+ +  P+L S+SLW ++ ITD G++++      L+ L +   + +TD  
Sbjct: 163 KVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKG 222

Query: 157 LFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINV 198
           L AIA +CPNL  + L +C  + + GLL +   C KL+S+++
Sbjct: 223 LVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

[Close]
BLAST of Cp4.1LG05g11740 vs. Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-12
Identity = 57/206 (27.67%), Postives = 92/206 (44.66%), Query Frame = 1 

Query: 12  ELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE----------- 71
           E +  ID LP + L  I   +PS  + +    V + W   +  S+ R E           
Sbjct: 50  EKQTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLS-SISRSEVNESSVQDVEE 109

Query: 72  -----SLSFAGWKMDDYSTARLIHHAYS---LRQLDISRSRWGCQITDHGLHEISLAKCI 131
                S S  G K  D   A +     S   L +L I  S +  ++TD GL  +  A   
Sbjct: 110 GEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAV--AHGC 169

Query: 132 PNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGT-FVTDVSLFAIADNCPNLKTIGL 191
           P+L+ +SLW +  ++D G+ ++      ++ L++     +TD  L AIA+NC NL  + +
Sbjct: 170 PSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTI 229

Query: 192 WSCRHVTETGLLILVSKCRKLESINV 198
            SC  V   GL  +  +C  L SI++
Sbjct: 230 DSCSGVGNEGLRAIARRCVNLRSISI 252

[Close]
BLAST of Cp4.1LG05g11740 vs. Swiss-Prot
Match: FBXL7_HUMAN (F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 1 

Query: 68  KMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEIS-------------------- 127
           ++ D     L+ +  S+++L +S  R+   ++D GL EI+                    
Sbjct: 310 RLTDEGLRYLVIYCASIKELSVSDCRF---VSDFGLREIAKLESRLRYLSIAHCGRVTDV 369

Query: 128 ----LAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGT-FVTDVSLFAIADN 187
               +AK    L+ ++  G  GITD GV  L      L++L+IG    V+D  L  +A N
Sbjct: 370 GIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALN 429

Query: 188 CPNLKTIGLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVD 206
           C NLK + L SC  +T  GL I+ + C  L+++NV    V V+
Sbjct: 430 CFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVE 469

[Close]
BLAST of Cp4.1LG05g11740 vs. TrEMBL
Match: A0A0A0LPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.1e-118
Identity = 213/233 (91.42%), Postives = 222/233 (95.28%), Query Frame = 1 

Query: 1   MSSSDMWPIEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S+ +W +EMELE EIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGC ITDHGL+EISLAKCIPNLKSISL
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 123

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTET 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTET
Sbjct: 124 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 183

Query: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 234
           GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS LLNSMW V+
Sbjct: 184 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS-LLNSMWSVV 235

[Close]
BLAST of Cp4.1LG05g11740 vs. TrEMBL
Match: A0A0B0NU42_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06272 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.2e-96
Identity = 174/223 (78.03%), Postives = 198/223 (88.79%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME EAEIDRLPIDLLAHIF MI SFTDLAQA GVCRKWK+GVK +L RR++LSFAG+KMD
Sbjct: 1   MEQEAEIDRLPIDLLAHIFLMITSFTDLAQASGVCRKWKQGVKQALARRQTLSFAGFKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARL+HHAYSL++LDISRSRWGCQITD+GL +ISLAKC+ NL SISLWG+ GITDKG
Sbjct: 61  DDSTARLVHHAYSLKELDISRSRWGCQITDNGLCQISLAKCVSNLTSISLWGITGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VVQLI+RANSLQ+LN+GGTF+TD SL AIAD+CP LK+I LWSCR VTETGL +LVSKCR
Sbjct: 121 VVQLITRANSLQHLNVGGTFITDESLSAIADSCPRLKSIVLWSCRQVTETGLFVLVSKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 234
           KLESINVWG RVP+DCFIGL+ I P+LQIK + L LN M PV+
Sbjct: 181 KLESINVWGTRVPLDCFIGLLTIRPALQIKPQGLPLNVMLPVV 223

[Close]
BLAST of Cp4.1LG05g11740 vs. TrEMBL
Match: W9SXB4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001772 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 7.5e-96
Identity = 172/216 (79.63%), Postives = 195/216 (90.28%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME EAEIDRLPIDLLAHIFAMI SFTDLAQA  VCRKWK+GVK SLGRRE+LSFAGWKMD
Sbjct: 1   MEGEAEIDRLPIDLLAHIFAMITSFTDLAQASSVCRKWKKGVKQSLGRRENLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARL+ HAYSL++LDISRSRWGCQI+D+GL++ISLAKC+ NL SISLWGM GITDKG
Sbjct: 61  DDSTARLVRHAYSLKELDISRSRWGCQISDNGLYQISLAKCVSNLTSISLWGMTGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           V+QLISRA SL++LNIGGTF+TD SL+AIAD CP LK+I LWSCRHV+E GLL+LV+KCR
Sbjct: 121 VLQLISRAKSLRHLNIGGTFITDESLYAIADGCPQLKSIVLWSCRHVSENGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLL 227
           KL+ INVWG RVPVDCFI L+ I P+LQIK+RSLLL
Sbjct: 181 KLKMINVWGTRVPVDCFIVLLTIRPALQIKTRSLLL 216

[Close]
BLAST of Cp4.1LG05g11740 vs. TrEMBL
Match: A0A0D2RFH7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025500 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.3e-95
Identity = 172/223 (77.13%), Postives = 198/223 (88.79%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME EAEIDRLPIDLLAHIF MI SFTDLAQA GVCRKWK+GVK +L RR++LSFAG+KMD
Sbjct: 1   MEQEAEIDRLPIDLLAHIFLMITSFTDLAQASGVCRKWKQGVKQALARRQTLSFAGFKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARL+HHAYSL++LDISRSRWGCQITD+GL +ISLAKC+ +L SISLWG+ GITDKG
Sbjct: 61  DDSTARLVHHAYSLKELDISRSRWGCQITDNGLCQISLAKCVSSLTSISLWGITGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VV+LI+RANSLQ+LN+GGTF+TD SL AIAD+CP LK+I LWSCR VTETGL +LVSKCR
Sbjct: 121 VVKLITRANSLQHLNVGGTFITDESLSAIADSCPRLKSIVLWSCRQVTETGLFVLVSKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 234
           KLESINVWG RVP+DCFIGL+ I P+LQIK + L LN M PV+
Sbjct: 181 KLESINVWGTRVPLDCFIGLLTIRPALQIKPQGLPLNVMLPVV 223

[Close]
BLAST of Cp4.1LG05g11740 vs. TrEMBL
Match: D7SVV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00340 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 7.0e-94
Identity = 171/224 (76.34%), Postives = 194/224 (86.61%), Query Frame = 1 

Query: 14  EAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMDDYS 73
           EAEI+RLP+DLLA+IF M+ SFTDLAQA  VCRKWK+GVK SLGRRESLSFAGW+MDD S
Sbjct: 9   EAEIERLPMDLLANIFVMLTSFTDLAQASSVCRKWKQGVKQSLGRRESLSFAGWQMDDDS 68

Query: 74  TARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQ 133
            ARL+ HAY L++LDISRSRWGCQ+TD+GL++ISLAKC+  L SISLWG+ GITD GVVQ
Sbjct: 69  IARLLRHAYGLKELDISRSRWGCQVTDNGLYKISLAKCVNKLTSISLWGVTGITDSGVVQ 128

Query: 134 LISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCRKLE 193
           LISRA SLQ+LNIGGTF+TD SLFAIA++CP LKTI LWSCRHVTE GLL+LVSKCRKL+
Sbjct: 129 LISRAISLQHLNIGGTFITDESLFAIAESCPCLKTIVLWSCRHVTENGLLVLVSKCRKLQ 188

Query: 194 SINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLN----SMWPVL 234
           SINVWG RVPVDCF  L+AI P+LQIK   LLLN    SMWPVL
Sbjct: 189 SINVWGTRVPVDCFFALLAIRPALQIKPGRLLLNVERVSMWPVL 232

[Close]
BLAST of Cp4.1LG05g11740 vs. TAIR10
Match: AT5G67140.1 (AT5G67140.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 328.9 bits (842), Expect = 2.5e-90
Identity = 153/221 (69.23%), Postives = 187/221 (84.62%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           M+ EA IDRLP+DLLA+IF++  SFT LAQA GVC+KW++ V  S+ RRE+LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D ST+RL+H A++L++LDISRSRWGC ITD+GL++I+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VVQLISR +SLQ+LNIGGTF+TD SLFAIA+ C  LKTIG+W CRHVTE GLL+LV+KCR
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWP 232
           KLESIN+WG RVPVDCFI L+ ISP+LQIK   LLLN+  P
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELLLNAQNP 221

[Close]
BLAST of Cp4.1LG05g11740 vs. TAIR10
Match: AT1G77000.1 (AT1G77000.1 RNI-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 56/216 (25.93%), Postives = 105/216 (48.61%), Query Frame = 1 

Query: 9   IEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVK--------------- 68
           +E  L +E   +P++LL  I  ++   T +  +C +C  W++ V                
Sbjct: 20  MEGVLISEWKDIPVELLMKILNLVDDRTVIIASC-ICSGWRDAVSLGLTRLSLSWCKKNM 79

Query: 69  ----LSLGRR----ESLSFAGWK--MDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGL 128
               LSL  +    ++L     K  ++D +   + +H + L+ LD+S+S    +ITDH L
Sbjct: 80  NSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSS---KITDHSL 139

Query: 129 HEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTF--VTDVSLFAIAD 188
           +  SLA+   NL  ++L G    +D  +  L      L+ LN+ G    V+D +L AI +
Sbjct: 140 Y--SLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGE 199

Query: 189 NCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINV 198
           NC  L+++ L  C ++++ G++ L   C  L ++++
Sbjct: 200 NCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDL 229

[Close]
BLAST of Cp4.1LG05g11740 vs. TAIR10
Match: AT2G25490.1 (AT2G25490.1 EIN3-binding F box protein 1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 97  QITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTDVS 156
           +++D GL   S+ +  P+L S+SLW ++ ITD G++++      L+ L +   + +TD  
Sbjct: 163 KVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKG 222

Query: 157 LFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINV 198
           L AIA +CPNL  + L +C  + + GLL +   C KL+S+++
Sbjct: 223 LVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

[Close]
BLAST of Cp4.1LG05g11740 vs. TAIR10
Match: AT5G25350.1 (AT5G25350.1 EIN3-binding F box protein 2)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 57/206 (27.67%), Postives = 92/206 (44.66%), Query Frame = 1 

Query: 12  ELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE----------- 71
           E +  ID LP + L  I   +PS  + +    V + W   +  S+ R E           
Sbjct: 50  EKQTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLS-SISRSEVNESSVQDVEE 109

Query: 72  -----SLSFAGWKMDDYSTARLIHHAYS---LRQLDISRSRWGCQITDHGLHEISLAKCI 131
                S S  G K  D   A +     S   L +L I  S +  ++TD GL  +  A   
Sbjct: 110 GEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAV--AHGC 169

Query: 132 PNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGT-FVTDVSLFAIADNCPNLKTIGL 191
           P+L+ +SLW +  ++D G+ ++      ++ L++     +TD  L AIA+NC NL  + +
Sbjct: 170 PSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTI 229

Query: 192 WSCRHVTETGLLILVSKCRKLESINV 198
            SC  V   GL  +  +C  L SI++
Sbjct: 230 DSCSGVGNEGLRAIARRCVNLRSISI 252

[Close]
BLAST of Cp4.1LG05g11740 vs. TAIR10
Match: AT1G21410.1 (AT1G21410.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-12
Identity = 38/134 (28.36%), Postives = 75/134 (55.97%), Query Frame = 1 

Query: 68  KMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGIT 127
           +++D +   + +H + L++LD+S+S    +ITD  L+  +LA   P+L  ++L G    +
Sbjct: 103 QLEDNAVEAIANHCHELQELDLSKS---LKITDRSLY--ALAHGCPDLTKLNLSGCTSFS 162

Query: 128 DKGVVQLISRANSLQNLNIGGTF--VTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLIL 187
           D  +  L      L+ LN+ G    VTD +L AI +NC  ++++ L  C ++++ G++ L
Sbjct: 163 DTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSL 222

Query: 188 VSKCRKLESINVWG 200
              C  L ++++ G
Sbjct: 223 AYGCPDLRTLDLCG 231

[Close]
BLAST of Cp4.1LG05g11740 vs. NCBI nr
Match: gi|659115833|ref|XP_008457759.1| (PREDICTED: F-box protein At5g67140 [Cucumis melo])

HSP 1 Score: 437.2 bits (1123), Expect = 1.8e-119
Identity = 215/233 (92.27%), Postives = 223/233 (95.71%), Query Frame = 1 

Query: 1   MSSSDMWPIEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S  +W +EMELE EIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 1   MDSDVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 60

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISL
Sbjct: 61  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISL 120

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTET 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTET
Sbjct: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 180

Query: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 234
           GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS LLNSMWPV+
Sbjct: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS-LLNSMWPVV 232

[Close]
BLAST of Cp4.1LG05g11740 vs. NCBI nr
Match: gi|449463955|ref|XP_004149695.1| (PREDICTED: F-box protein At5g67140-like [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 4.5e-118
Identity = 213/233 (91.42%), Postives = 222/233 (95.28%), Query Frame = 1 

Query: 1   MSSSDMWPIEMELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRE 60
           M S+ +W +EMELE EIDRLPIDLLAHIFAMI SFTDLAQACGVCRKWKEGVKLSLGRR+
Sbjct: 4   MDSAVVWSVEMELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRK 63

Query: 61  SLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISL 120
           SLSFAGWKMDD STARLI HAYSLR+LDISRSRWGC ITDHGL+EISLAKCIPNLKSISL
Sbjct: 64  SLSFAGWKMDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISL 123

Query: 121 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTET 180
           WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTET
Sbjct: 124 WGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTET 183

Query: 181 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 234
           GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS LLNSMW V+
Sbjct: 184 GLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS-LLNSMWSVV 235

[Close]
BLAST of Cp4.1LG05g11740 vs. NCBI nr
Match: gi|659115831|ref|XP_008457758.1| (PREDICTED: F-box protein At5g67140-like [Cucumis melo])

HSP 1 Score: 365.5 bits (937), Expect = 6.7e-98
Identity = 179/220 (81.36%), Postives = 197/220 (89.55%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME   EIDRLPIDLLA IFAMI  F+DLAQA GVCRKWK+GV++S+GRR+SLSFAGWKM 
Sbjct: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARLI H +SLR+LD SRS WGCQITDHGL++ISLAKCIPNLKSISLWGM GITDKG
Sbjct: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VVQLISRANSLQNLNIGGT++TD+SL AIA+NCPNLKTI LW CR VTE+GLLILV KC 
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMW 231
           KLESINVW MRVPVDCF+GLVAISPSLQIKSRS +L+S W
Sbjct: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRS-VLDSTW 219

[Close]
BLAST of Cp4.1LG05g11740 vs. NCBI nr
Match: gi|449463986|ref|XP_004149710.1| (PREDICTED: F-box protein At5g67140-like [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 9.7e-97
Identity = 173/220 (78.64%), Postives = 196/220 (89.09%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME   EIDRLPIDLLAHIFAMI  F+DLAQA GVCR+WK+GVK+S+GRR+SLSFAGWK++
Sbjct: 1   MESAVEIDRLPIDLLAHIFAMITYFSDLAQARGVCRRWKDGVKMSIGRRKSLSFAGWKLE 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STA LI H +SLR+LD SRS WGCQITDHGL++IS+AKC+PNLKSISLWGM  ITDKG
Sbjct: 61  DDSTAHLIRHEHSLRELDFSRSDWGCQITDHGLNQISIAKCVPNLKSISLWGMVRITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VVQLISRANSLQNLNIGGT++TD+SL AIADNCPNLKTI LW CR VTE+GLLILV  C 
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIADNCPNLKTIVLWCCRLVTESGLLILVRNCH 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMW 231
           +LESINVW MRVP+DCF+GLVAISPSLQIKSRS +L+S W
Sbjct: 181 QLESINVWAMRVPIDCFVGLVAISPSLQIKSRS-VLDSTW 219

[Close]
BLAST of Cp4.1LG05g11740 vs. NCBI nr
Match: gi|728838610|gb|KHG18053.1| (hypothetical protein F383_06272 [Gossypium arboreum])

HSP 1 Score: 360.9 bits (925), Expect = 1.7e-96
Identity = 174/223 (78.03%), Postives = 198/223 (88.79%), Query Frame = 1 

Query: 11  MELEAEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMD 70
           ME EAEIDRLPIDLLAHIF MI SFTDLAQA GVCRKWK+GVK +L RR++LSFAG+KMD
Sbjct: 1   MEQEAEIDRLPIDLLAHIFLMITSFTDLAQASGVCRKWKQGVKQALARRQTLSFAGFKMD 60

Query: 71  DYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKG 130
           D STARL+HHAYSL++LDISRSRWGCQITD+GL +ISLAKC+ NL SISLWG+ GITDKG
Sbjct: 61  DDSTARLVHHAYSLKELDISRSRWGCQITDNGLCQISLAKCVSNLTSISLWGITGITDKG 120

Query: 131 VVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCR 190
           VVQLI+RANSLQ+LN+GGTF+TD SL AIAD+CP LK+I LWSCR VTETGL +LVSKCR
Sbjct: 121 VVQLITRANSLQHLNVGGTFITDESLSAIADSCPRLKSIVLWSCRQVTETGLFVLVSKCR 180

Query: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 234
           KLESINVWG RVP+DCFIGL+ I P+LQIK + L LN M PV+
Sbjct: 181 KLESINVWGTRVPLDCFIGLLTIRPALQIKPQGLPLNVMLPVV 223

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g11740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB302_ARATH4.4e-8969.23F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1[more]
SKP2B_ARATH2.5e-1225.93F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1[more]
EBF1_ARATH4.3e-1234.31EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1[more]
EBF2_ARATH5.6e-1227.67EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1[more]
FBXL7_HUMAN2.1e-1129.45F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1[more]
BLAST of Cp4.1LG05g11740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU5_CUCSA3.1e-11891.42Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279180 PE=4 SV=1[more]
A0A0B0NU42_GOSAR1.2e-9678.03Uncharacterized protein OS=Gossypium arboreum GN=F383_06272 PE=4 SV=1[more]
W9SXB4_9ROSA7.5e-9679.63Uncharacterized protein OS=Morus notabilis GN=L484_001772 PE=4 SV=1[more]
A0A0D2RFH7_GOSRA1.3e-9577.13Uncharacterized protein OS=Gossypium raimondii GN=B456_003G025500 PE=4 SV=1[more]
D7SVV1_VITVI7.0e-9476.34Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00340 PE=4 SV=... [more]
BLAST of Cp4.1LG05g11740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67140.12.5e-9069.23 F-box/RNI-like superfamily protein[more]
AT1G77000.11.4e-1325.93 RNI-like superfamily protein[more]
AT2G25490.12.4e-1334.31 EIN3-binding F box protein 1[more]
AT5G25350.13.2e-1327.67 EIN3-binding F box protein 2[more]
AT1G21410.14.6e-1228.36 F-box/RNI-like superfamily protein[more]
BLAST of Cp4.1LG05g11740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115833|ref|XP_008457759.1|1.8e-11992.27PREDICTED: F-box protein At5g67140 [Cucumis melo][more]
gi|449463955|ref|XP_004149695.1|4.5e-11891.42PREDICTED: F-box protein At5g67140-like [Cucumis sativus][more]
gi|659115831|ref|XP_008457758.1|6.7e-9881.36PREDICTED: F-box protein At5g67140-like [Cucumis melo][more]
gi|449463986|ref|XP_004149710.1|9.7e-9778.64PREDICTED: F-box protein At5g67140-like [Cucumis sativus][more]
gi|728838610|gb|KHG18053.1|1.7e-9678.03hypothetical protein F383_06272 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11740.1Cp4.1LG05g11740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 17..50
score: 2.
IPR001810F-box domainunknownSSF81383F-box domaincoord: 17..50
score: 5.4
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 138..162
score: 12.0coord: 112..137
score: 1.4coord: 163..188
score: 1.
NoneNo IPR availablePANTHERPTHR24006FAMILY NOT NAMEDcoord: 3..218
score: 4.8
NoneNo IPR availableunknownSSF52047RNI-likecoord: 71..217
score: 4.91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11740Cucsa.367210Cucumber (Gy14) v1cgycpeB0975
Cp4.1LG05g11740CmaCh20G009950Cucurbita maxima (Rimu)cmacpeB585
Cp4.1LG05g11740CmaCh02G005170Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g11740CmoCh02G005280Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g11740CmoCh20G010110Cucurbita moschata (Rifu)cmocpeB534
Cp4.1LG05g11740Cla020232Watermelon (97103) v1cpewmB726
Cp4.1LG05g11740Csa2G279180Cucumber (Chinese Long) v2cpecuB710
Cp4.1LG05g11740MELO3C020857Melon (DHL92) v3.5.1cpemeB673
Cp4.1LG05g11740ClCG02G012310Watermelon (Charleston Gray)cpewcgB648
Cp4.1LG05g11740CSPI02G14040Wild cucumber (PI 183967)cpecpiB712
Cp4.1LG05g11740Lsi10G005290Bottle gourd (USVL1VR-Ls)cpelsiB594
Cp4.1LG05g11740MELO3C020857.2Melon (DHL92) v3.6.1cpemedB805
Cp4.1LG05g11740CsaV3_2G016460Cucumber (Chinese Long) v3cpecucB0883
Cp4.1LG05g11740Bhi10G001404Wax gourdcpewgoB0965
Cp4.1LG05g11740CsGy2G013840Cucumber (Gy14) v2cgybcpeB244
Cp4.1LG05g11740Carg25138Silver-seed gourdcarcpeB0577
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g11740Cp4.1LG16g01260Cucurbita pepo (Zucchini)cpecpeB309
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g11740Cucurbita pepo (Zucchini)cpecpeB097
Cp4.1LG05g11740Cucurbita pepo (Zucchini)cpecpeB421
Cp4.1LG05g11740Cucumber (Gy14) v1cgycpeB0115
Cp4.1LG05g11740Cucumber (Gy14) v1cgycpeB0223
Cp4.1LG05g11740Cucumber (Gy14) v1cgycpeB0974
Cp4.1LG05g11740Wild cucumber (PI 183967)cpecpiB708
Cp4.1LG05g11740Wild cucumber (PI 183967)cpecpiB764
Cp4.1LG05g11740Cucumber (Chinese Long) v2cpecuB706
Cp4.1LG05g11740Cucumber (Chinese Long) v2cpecuB763
Cp4.1LG05g11740Bottle gourd (USVL1VR-Ls)cpelsiB589
Cp4.1LG05g11740Bottle gourd (USVL1VR-Ls)cpelsiB610
Cp4.1LG05g11740Watermelon (Charleston Gray)cpewcgB642
Cp4.1LG05g11740Watermelon (Charleston Gray)cpewcgB663
Cp4.1LG05g11740Watermelon (97103) v1cpewmB720
Cp4.1LG05g11740Melon (DHL92) v3.5.1cpemeB660
Cp4.1LG05g11740Melon (DHL92) v3.5.1cpemeB672
Cp4.1LG05g11740Melon (DHL92) v3.5.1cpemeB706
Cp4.1LG05g11740Cucumber (Gy14) v2cgybcpeB242
Cp4.1LG05g11740Silver-seed gourdcarcpeB0568
Cp4.1LG05g11740Cucumber (Chinese Long) v3cpecucB0881
Cp4.1LG05g11740Cucumber (Chinese Long) v3cpecucB0943