Carg25138-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTTCAACGGTCAATCCAGTGGATAATCGAGCGCCATGAGAGATCAGAACGCCATCGTGGCGACTGGAGCTCAGATTCTTGTAATGGTGGCGATATGAAGCCAGTATCCACTCTCTCTCTCTCCTTTCCCCTGTAGAATCTTCCGCCTGCTCTTTTTTTGGTTCTCCTGTGCAGTAACGAGTTGAACGCTTGACTTTTCTCCGCACGTTTTGGGTTTTCGACACTGCGTCAAACGATAAACTTCTGGAGGAGGAGTGGAGAGGAATGAGTTCGGGTGATATGTGGCCGATCGAGATGGAGTTGGAGCCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGTAATCGATGCTAATTTCTGCTTATGAATGTCTTTTTGTTCGATTAATTTTGTTATTGTTCCTAATTTTGGGGGTTTCTGCGAATATTTGCCGGAAAAAACGCAGGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATGTAATTCCTCTTTCCTTCTAGAATTTCAGTTTTCTTAAGAAAATTGCTTCTGTTTGCTTCTCTTCAAGTGGATTCTGATTACGGATGGTTAATTTTGGTATTGGTGTTGTGATCTGGGAGACAAAGCGAGTTTTTCGACATTGCATGGATAATCAATTCAATTAGACTTCGATTTTCATTTTCTGTTTATCCTTAGTCAGGCAACTTGATTATGAACCACGCAAACGGAGGTTTCTCTTAAGATTTGAGTCTTAGAACGTAAGATGAGATGTTGTTTGGGCGTACTTCTGGAGAAAGTTCTTTAAAATTGTTCTATAAAGCTTTGTTATGTTCTTGGTGGTTATAGCTCATGTTCTTGGTTGAGTTATTCTCAAATAAGGGAACATTATGAGAGTAACTCAAAGGATATGAGATAAAACAGAGTATATGTATCAAAGCTTGGTTGTTTGCATCGTTTCCAAGTAGTCCACGGCCATGGCTGTCTTTGTTGTTCTTGTGTCGACTCGAGCAAAATGCCGACTAATCCATCATTCTCTTGTAATTATGTGTTTTTCAGCTCAAGAAGCCGTTGGGGTTGTCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTTGTGCAGCTGGTATGATATTATCTTATCTCCAGACCAATTATGCCTAAAGAAATAGCCCTTAAAATCAGCCTGAATCTGTAAACTAGAGTATGAGTTAAGCTGGAAATTGAACTAGTAAATTTAAGTATTACATGTTCTTGGAGGATTTCTGTTGTTCATATCTTCATTTCTCTGTTCCAATAAGTTTTCAGTATTGTCAAACTCCTCAGGATCTTCTTGAATCCATCTTCGAAAACTAAGCATCAGGTTAAGAAACCATTTTTTTTTTCTCTGCTTCAGAAGTTTTGTTAAGGCCAAGGGTGATTTGTGGAAGTACGTTTCCACTTGTTCTTAAAACTAGCTCTTCATAAGAGAAAAAACAAGAAACAACTTTCAAAAAATATTAATCCAGACATGTTTCACTTCATTTTTTGTTCTATAATGCAGAAAAAACTAAAAGCTATTATGAAACAGCTCCTAAATAGCCTCTTAAGCATTCCCATTTAATGTTTTGATGTCTACGTAGTTCATTCTAAGACTGCATTTGGTTCTATTTCCAGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGGTGACCATGTCTTCCAATAGAGTGTTAATCATATGCTATACTTATATGTCTCGCCCGATCTTTAATCGGCACATATCTTTATGTATTCTGCAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGATTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGTCTGTTCTGTGAAATATGCTTAAATATTCGCATCCTGTAAAAGCTTCTATTGTATGCATGTCTTCA AATTTCAACGGTCAATCCAGTGGATAATCGAGCGCCATGAGAGATCAGAACGCCATCGTGGCGACTGGAGCTCAGATTCTTGTAATGGTGGCGATATGAAGCCAGTATCCACTCTCTCTCTCTCCTTTCCCCTGTAGAATCTTCCGCCTGCTCTTTTTTTGGTTCTCCTGTGCAGTAACGAGTTGAACGCTTGACTTTTCTCCGCACGTTTTGGGTTTTCGACACTGCGTCAAACGATAAACTTCTGGAGGAGGAGTGGAGAGGAATGAGTTCGGGTGATATGTGGCCGATCGAGATGGAGTTGGAGCCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATCTCAAGAAGCCGTTGGGGTTGTCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTTGTGCAGCTGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGATTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGTCTGTTCTGTGAAATATGCTTAAATATTCGCATCCTGTAAAAGCTTCTATTGTATGCATGTCTTCA ATGAGTTCGGGTGATATGTGGCCGATCGAGATGGAGTTGGAGCCTGAGATTGATCGCTTGCCGATTGACCTACTGGCTCATATTTTCGCGATGATCCCGTCCTTCACTGATTTGGCTCAGGCGTGCGGCGTCTGTAGGAAATGGAAGGAAGGAGTGAAACTGTCTCTTGGTAGGAGGGAGAGTTTGAGTTTTGCTGGTTGGAAGATGGATGATTACTCCACTGCTCGCCTTATTCACCATGCCTACAGTCTTCGACAACTCGACATCTCAAGAAGCCGTTGGGGTTGTCAAATAACAGACCATGGATTGCATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTATGGGGTATGGCAGGGATCACCGACAAAGGCGTTGTGCAGCTGATTTCCCGAGCTAACTCCTTGCAAAACCTGAATATCGGTGGAACATTTGTCACAGATGTCTCTCTATTCGCAATCGCGGATAACTGTCCAAATTTGAAGACCATTGGCCTCTGGAGTTGTCGCCATGTTACAGAAACTGGACTTCTTATTCTCGTAAGTAAATGTCGCAAACTCGAGTCGATAAATGTGTGGGGAATGAGGGTTCCTGTAGATTGCTTCATTGGTTTGGTTGCGATAAGTCCATCACTCCAAATAAAATCAAGAAGTCTGCTCCTAAACTCTATGTGGTCTGTTCTGTGA MSSGDMWPIEMELEPEIDRLPIDLLAHIFAMIPSFTDLAQACGVCRKWKEGVKLSLGRRESLSFAGWKMDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWSVL
BLAST of Carg25138-RA vs. NCBI nr
Match: XP_022947259.1 (F-box protein At5g67140 [Cucurbita moschata]) HSP 1 Score: 417.9 bits (1073), Expect = 2.2e-113 Identity = 232/233 (99.57%), Postives = 232/233 (99.57%), Query Frame = 0
BLAST of Carg25138-RA vs. NCBI nr
Match: XP_023006941.1 (F-box protein At5g67140 [Cucurbita maxima]) HSP 1 Score: 414.8 bits (1065), Expect = 1.9e-112 Identity = 231/233 (99.14%), Postives = 231/233 (99.14%), Query Frame = 0
BLAST of Carg25138-RA vs. NCBI nr
Match: XP_023533904.1 (F-box protein At5g67140 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 412.5 bits (1059), Expect = 9.3e-112 Identity = 230/233 (98.71%), Postives = 230/233 (98.71%), Query Frame = 0
BLAST of Carg25138-RA vs. NCBI nr
Match: XP_004149695.1 (PREDICTED: F-box protein At5g67140-like [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_2G279180 [Cucumis sativus]) HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101 Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0
BLAST of Carg25138-RA vs. NCBI nr
Match: XP_008457759.1 (PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902142.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902143.1 PREDICTED: F-box protein At5g67140 [Cucumis melo]) HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101 Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0
BLAST of Carg25138-RA vs. TAIR10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein) HSP 1 Score: 273.1 bits (697), Expect = 1.6e-73 Identity = 156/218 (71.56%), Postives = 187/218 (85.78%), Query Frame = 0
BLAST of Carg25138-RA vs. TAIR10
Match: AT4G05490.1 (RNI-like superfamily protein) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-05 Identity = 44/161 (27.33%), Postives = 66/161 (40.99%), Query Frame = 0
BLAST of Carg25138-RA vs. TAIR10
Match: AT1G47056.1 (VIER F-box proteine 1) HSP 1 Score: 45.4 bits (106), Expect = 5.4e-05 Identity = 47/176 (26.70%), Postives = 74/176 (42.05%), Query Frame = 0
BLAST of Carg25138-RA vs. TAIR10
Match: AT4G05460.1 (RNI-like superfamily protein) HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04 Identity = 48/182 (26.37%), Postives = 78/182 (42.86%), Query Frame = 0
BLAST of Carg25138-RA vs. Swiss-Prot
Match: sp|Q9FH99|FB302_ARATH (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 2.9e-72 Identity = 156/218 (71.56%), Postives = 187/218 (85.78%), Query Frame = 0
BLAST of Carg25138-RA vs. Swiss-Prot
Match: sp|Q6BIN3|AMN1_DEBHA (Antagonist of mitotic exit network protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=AMN1 PE=3 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 8.8e-05 Identity = 27/84 (32.14%), Postives = 40/84 (47.62%), Query Frame = 0
BLAST of Carg25138-RA vs. TrEMBL
Match: tr|A0A0A0LPU5|A0A0A0LPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 2.2e-101 Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0
BLAST of Carg25138-RA vs. TrEMBL
Match: tr|A0A1S4E1P2|A0A1S4E1P2_CUCME (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 2.9e-101 Identity = 213/233 (91.42%), Postives = 221/233 (94.85%), Query Frame = 0
BLAST of Carg25138-RA vs. TrEMBL
Match: tr|A0A2P5D1H3|A0A2P5D1H3_9ROSA (F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_265200 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 1.3e-80 Identity = 178/217 (82.03%), Postives = 194/217 (89.40%), Query Frame = 0
BLAST of Carg25138-RA vs. TrEMBL
Match: tr|W9SXB4|W9SXB4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001772 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 2.8e-80 Identity = 170/216 (78.70%), Postives = 189/216 (87.50%), Query Frame = 0
BLAST of Carg25138-RA vs. TrEMBL
Match: tr|A0A2N9FF16|A0A2N9FF16_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13321 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 2.8e-80 Identity = 179/223 (80.27%), Postives = 197/223 (88.34%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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