Carg25029 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25029
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rubber elongation factor protein (REF)
Location	Cucurbita_argyrosperma_scaffold_176 : 241103 .. 243499 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGACTTTCTAGATCTACGCTCCCATTGAGCTTCCAGTTTCCACCATGGCCGTCCGTTTCGACCGACTCTCAACCTGCGTTCTTCTCACCTATAAATTCCCTTTCTTCTCCTTCTCCCTCTTCCATCGATTCTATCGCTAAGCATTTTGATTTCCCTACAAAATCAAACATCAAATCGCATCTTTCTTCCGTTTTCCATCTCGAGCTCCTCTTGAGTTTCCCCCACGTTTTTTCGCTATGGCTGATTCCAATCCTTCGTCGCAGCACCATGAAATGGTACGATTCTCTCATCACTCGAATTTCTTGCGGTTTTTATTTTTGATCTAATTGGATTTGTCGATTTTGTGCGGAATTTCTGTTTTCTGAGATTGTGAGGATTGATCGATTGGATTTTGTGTAGGCGGCTAGGGCAGAGGAGGAGAGGCTGAAGTATTTGGAGTTTGTTCAAACGGCGGCGTTTCGAGCGACGGAGTGTTTCTTCAACGTTTATGGCTATGCGAAGAACCGGATTGGTCCACTGAGGCCCGGCGTTGAGACTGTCGAGGGCACTGTGAAGTCTGTTGTCGGTCCTTTGTACAATAAGTTCCACGGCGTTCCGATTGAGGTTCTTAAGTTCGTCGATCGCAAGGTTGGTTTTCTTTCTTCTATTACTGTTCTATGCATGTTCTTCATATAAATTTCTCTTCGTTTTCTTCTCGGATTGATTTATCAGATGCCTTTGGTTAATTATCAATTTCAGCCTATGGATTAAAACTTCTCAATTAAGTAGTTCTATGGAAAGTATAATGACTTTTTGTGGAGATTAAATTTCTAATATACTGTAGACTTTTCGTTTTGGTCCTTGAACTCTGTTTATACTTTCCCTTAGCATGGCTTCAAGTATCTTTGTTGAATATGGACATGTTACATGTATAAGGCTGAGTATTATTTGAGTTCATGCTAGAAGGATCGAAATGAGTGTTCTCTAAAAAGTTCAAGGATCAAATGAAGATTATACCAATTTTGTAGTTGAAATATCTGAATGGAATTCAAATCAGTTTGTTCATACAAAGTTGATATGTTAGGTAGCATTTTGTGCGCATTTCGAATTCTAATGGAAGAACGTGATGAGAAAACTGAGAATTTACAGGATTGAGGTTGAGATTAGCAAGATGGATTTTGTTTAGTTAGTTCTTTCCCTTTGGAATGATGCAAATAACCAAACGTTGAATGCTAAAACACTGAGAAACTTATTTTCTTTGATTGTTAATGTATAGGTTGACGAGTCGGTGACCAAGATCGATCGGCATGTACCGCCAACCATCAAGCAAGCCTCATCGCAGGCCATGTCCGCCGCACAGCAAGCGCCTGAAATTGCCCGAAATGTAGCCTTGGAGGTCAGACACACTGGCCTTAAAGACTCTGTCTCTGGCATTGTGAAATCTGTGTATGCCAAGTACGAGCCAACTGCTAAGCAACTCTACTCCAAATACGAGCCGAAGGCCGAGCAATGCGCAGCTTCGGCATGGCACAGACTCAACCAGCTCCCTGTTTTCCCCACTGTCGCACAAGCCATCTTGCCAACTGCAGTGTACTGCACCGAGAAATACAACGAGACCGTGCAAAGCACCTCCAAGAAGGGCTACAAGGTCTCTTCGTACCTCCCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGGACAGAATTGAGATGGAGCCCTTGGTGAACTGAGAGCCCTTGGATTTCCTGGTTTCGAAATAACACATCATGAATGTTTTTGTTGAACGGAGGCACACTTACATGTTGGTGTTGTCATCCTCTCTGAGCCTTGTGTTGTTTTGGCTTCAGATATAGCTATGGCTTTTATGTTTCTTCTTTGGTAAGAGATATTAGTTACACAGGTTTGATATTATATTTGAAGGCTTAATTAATTCCTAGTCTTTGTTTGAGATTTACTTTCTTCCTGCGTATAACATTAGATGGAAAAAATATTTTAATATTTTTCCTAAGGTGAGAAAGCTTCTCCCAAAAGACCGTTTTAAATTCATGAGGCTAATAGCCATATGTGACAGACCAGAATGGATAATATCGACTGGCGGTAGACTTTAGCTGTAGAGTCGACTCTTTATACAAATTTTTAGTGCAGAAGTTTTCGTCCATTTCGCTAACTCGTTCCATTTGTCATTGATATTTTTTTGTCTAAATTCATGCACTTGATATTTTCACGAAAGGATAATGTTTAGAAATTTTGTAGTAATACCTGGACAGTATCGCAAACCAAATAACACAATCATACTAACCAAACTAAGAAGAAAGTAGATGGTGATGACTTTCATGTGCAAACAAGATAGAAGGCAACACGTGAATGACGCCCATCGAATTACATTAAGGTCATGATAGATAAGTAT

mRNA sequence

ATTTGACTTTCTAGATCTACGCTCCCATTGAGCTTCCAGTTTCCACCATGGCCGTCCGTTTCGACCGACTCTCAACCTGCGTTCTTCTCACCTATAAATTCCCTTTCTTCTCCTTCTCCCTCTTCCATCGATTCTATCGCTAAGCATTTTGATTTCCCTACAAAATCAAACATCAAATCGCATCTTTCTTCCGTTTTCCATCTCGAGCTCCTCTTGAGTTTCCCCCACGTTTTTTCGCTATGGCTGATTCCAATCCTTCGTCGCAGCACCATGAAATGGCGGCTAGGGCAGAGGAGGAGAGGCTGAAGTATTTGGAGTTTGTTCAAACGGCGGCGTTTCGAGCGACGGAGTGTTTCTTCAACGTTTATGGCTATGCGAAGAACCGGATTGGTCCACTGAGGCCCGGCGTTGAGACTGTCGAGGGCACTGTGAAGTCTGTTGTCGGTCCTTTGTACAATAAGTTCCACGGCGTTCCGATTGAGGTTCTTAAGTTCGTCGATCGCAAGGTTGACGAGTCGGTGACCAAGATCGATCGGCATGTACCGCCAACCATCAAGCAAGCCTCATCGCAGGCCATGTCCGCCGCACAGCAAGCGCCTGAAATTGCCCGAAATGTAGCCTTGGAGGTCAGACACACTGGCCTTAAAGACTCTGTCTCTGGCATTGTGAAATCTGTGTATGCCAAGTACGAGCCAACTGCTAAGCAACTCTACTCCAAATACGAGCCGAAGGCCGAGCAATGCGCAGCTTCGGCATGGCACAGACTCAACCAGCTCCCTGTTTTCCCCACTGTCGCACAAGCCATCTTGCCAACTGCAGTGTACTGCACCGAGAAATACAACGAGACCGTGCAAAGCACCTCCAAGAAGGGCTACAAGGTCTCTTCGTACCTCCCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGGACAGAATTGAGATGGAGCCCTTGGTGAACTGAGAGCCCTTGGATTTCCTGGTTTCGAAATAACACATCATGAATGTTTTTGTTGAACGGAGGCACACTTACATGTTGGTGTTGTCATCCTCTCTGAGCCTTGTGTTGTTTTGGCTTCAGATATAGCTATGGCTTTTATGTTTCTTCTTTGGTAAGAGATATTAGTTACACAGGTTTGATATTATATTTGAAGGCTTAATTAATTCCTAGTCTTTGTTTGAGATTTACTTTCTTCCTGCGTATAACATTAGATGGAAAAAATATTTTAATATTTTTCCTAAGGTGAGAAAGCTTCTCCCAAAAGACCGTTTTAAATTCATGAGGCTAATAGCCATATGTGACAGACCAGAATGGATAATATCGACTGGCGGTAGACTTTAGCTGTAGAGTCGACTCTTTATACAAATTTTTAGTGCAGAAGTTTTCGTCCATTTCGCTAACTCGTTCCATTTGTCATTGATATTTTTTTGTCTAAATTCATGCACTTGATATTTTCACGAAAGGATAATGTTTAGAAATTTTGTAGTAATACCTGGACAGTATCGCAAACCAAATAACACAATCATACTAACCAAACTAAGAAGAAAGTAGATGGTGATGACTTTCATGTGCAAACAAGATAGAAGGCAACACGTGAATGACGCCCATCGAATTACATTAAGGTCATGATAGATAAGTAT

Coding sequence (CDS)

ATGGCTGATTCCAATCCTTCGTCGCAGCACCATGAAATGGCGGCTAGGGCAGAGGAGGAGAGGCTGAAGTATTTGGAGTTTGTTCAAACGGCGGCGTTTCGAGCGACGGAGTGTTTCTTCAACGTTTATGGCTATGCGAAGAACCGGATTGGTCCACTGAGGCCCGGCGTTGAGACTGTCGAGGGCACTGTGAAGTCTGTTGTCGGTCCTTTGTACAATAAGTTCCACGGCGTTCCGATTGAGGTTCTTAAGTTCGTCGATCGCAAGGTTGACGAGTCGGTGACCAAGATCGATCGGCATGTACCGCCAACCATCAAGCAAGCCTCATCGCAGGCCATGTCCGCCGCACAGCAAGCGCCTGAAATTGCCCGAAATGTAGCCTTGGAGGTCAGACACACTGGCCTTAAAGACTCTGTCTCTGGCATTGTGAAATCTGTGTATGCCAAGTACGAGCCAACTGCTAAGCAACTCTACTCCAAATACGAGCCGAAGGCCGAGCAATGCGCAGCTTCGGCATGGCACAGACTCAACCAGCTCCCTGTTTTCCCCACTGTCGCACAAGCCATCTTGCCAACTGCAGTGTACTGCACCGAGAAATACAACGAGACCGTGCAAAGCACCTCCAAGAAGGGCTACAAGGTCTCTTCGTACCTCCCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGGACAGAATTGAGATGGAGCCCTTGGTGAACTGA

Protein sequence

MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSQAMSAAQQAPEIARNVALEVRHTGLKDSVSGIVKSVYAKYEPTAKQLYSKYEPKAEQCAASAWHRLNQLPVFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPLVN

Homology

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BLAST of Carg25029 vs. NCBI nr
Match: XP_022933698.1 (REF/SRPP-like protein At3g05500 [Cucurbita moschata])

HSP 1 Score: 407.9 bits (1047), Expect = 2.4e-110
Identity = 234/242 (96.69%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV
Sbjct: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVD SVTKIDRHVPPTIKQASS   XXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDASVTKIDRHVPPTIKQASSQAMXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           X    VALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP
Sbjct: 121 XIARNVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL
Sbjct: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029 vs. NCBI nr
Match: XP_023530281.1 (REF/SRPP-like protein At3g05500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.1 bits (1045), Expect = 4.1e-110
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADSNPSSQH EMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV
Sbjct: 1   MADSNPSSQHQEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP
Sbjct: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL
Sbjct: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029 vs. NCBI nr
Match: XP_022969922.1 (REF/SRPP-like protein At3g05500 [Cucurbita maxima])

HSP 1 Score: 396.4 bits (1017), Expect = 7.2e-107
Identity = 234/242 (96.69%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRA+ECFFN YGYAKNRIGPLRPGVETV
Sbjct: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRASECFFNAYGYAKNRIGPLRPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQA  XXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQAXXXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXX  +EVRHTGLKDSVSGIVKSVYAKYEP XXXXXXXXXXXXXXXXASAWHRLNQLP
Sbjct: 121 XXXXXXXMEVRHTGLKDSVSGIVKSVYAKYEPXXXXXXXXXXXXXXXXXASAWHRLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL
Sbjct: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029 vs. NCBI nr
Match: XP_004135611.1 (PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus] >KGN66066.1 hypothetical protein Csa_1G569430 [Cucumis sativus])

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 196/242 (80.99%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADS+ SSQ  +M  RA++  LKYLEFVQTAAFRATECFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVV PLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPT+KQASS          
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EVR  GLKDSVSGIVKSVYAKYEP+XXXXXXXXXXXXXXXX  AWH+LNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSXXXXXXXXXXXXXXXXXXAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTA YCTEKYNETV++++KKGYKVSSYLPLVPTERIAKVFSK+ +EMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029 vs. NCBI nr
Match: XP_022146027.1 (REF/SRPP-like protein At3g05500 [Momordica charantia])

HSP 1 Score: 337.0 bits (863), Expect = 5.2e-89
Identity = 203/242 (83.88%), Postives = 217/242 (89.67%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA+ +PS Q  EMAARAEEERLKYL FVQTAAF AT CFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MAEPDPSVQQLEMAARAEEERLKYLAFVQTAAFFATACFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPT      XXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXX     R +GLKDS+SGIVKSVYAKYEPTXXXXXXXXXXXXXX  A AWH+LNQLP
Sbjct: 121 XXXXXXXXXXRRSGLKDSLSGIVKSVYAKYEPTXXXXXXXXXXXXXXCAALAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFP VAQAILPTA YCTEKYNETV++T++KGYKVSSYLPLVPTERIAKVFSKDR+E+EPL
Sbjct: 181 VFPHVAQAILPTAAYCTEKYNETVRTTAEKGYKVSSYLPLVPTERIAKVFSKDRVEVEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 242

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BLAST of Carg25029 vs. TAIR10
Match: AT3G05500.1 (Rubber elongation factor protein (REF))

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-61
Identity = 131/240 (54.58%), Postives = 175/240 (72.92%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA     +Q      + E+ERLKYL+FVQ AA  A   F  +Y  AK++ GPL+PGVE+V
Sbjct: 1   MATQTDLAQPKLDMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EG VK+VVGP+Y K+H VP+EVLK++D+KVD SVT++DR VPP +KQ S+          
Sbjct: 61  EGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                +A EVR  G+ ++ SG+ KSVY+KYE  XXXXXXXXXXXXXXXX  AW +LNQLP
Sbjct: 121 IVARALASEVRRAGVVETASGMAKSVYSKYEXXXXXXXXXXXXXXXXXXXXAWKKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           +FP +AQ  +PTA +C+EKYN+TV   ++KGY+V+SY+PLVPTERI+K+F++++ E EPL
Sbjct: 181 LFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of Carg25029 vs. TAIR10
Match: AT2G47780.1 (Rubber elongation factor protein (REF))

HSP 1 Score: 167.5 bits (423), Expect = 9.8e-42
Identity = 87/214 (40.65%), Postives = 124/214 (57.94%), Query Frame = 0


Query: 21  RLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHGVPI 80
           +LK+LEF+Q AA     CF  +Y  AK+  GPL+ GVE +E  V++V+ PLY KFH VP 
Sbjct: 40  KLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPF 99

Query: 81  EVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKDSVS 140
           ++L FVDRKVD+    ++ +VP  +KQASS               VA EV+ TG+ D+  
Sbjct: 100 KLLLFVDRKVDDVFFDVETYVPSLVKQASS-----------QALTVATEVQRTGVVDTTK 159

Query: 141 GIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCTEKY 200
            I +SV  KYEP                 A+ W  LNQLP+FP VA  ++PTA Y +EKY
Sbjct: 160 SIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKY 219

Query: 201 NETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDR 235
           N+ V+    + Y  + YLP++P E+I+ +  +D+
Sbjct: 220 NDAVRYVGDRDYFGAEYLPMIPIEKISDILEQDQ 231

[Close]

BLAST of Carg25029 vs. TAIR10
Match: AT1G67360.2 (Rubber elongation factor protein (REF))

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 69/217 (31.80%), Postives = 99/217 (45.62%), Query Frame = 0


Query: 17  AEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFH 76
           ++E  LK+L FV+ A         N+Y YAK   GPL+  VE VEG V +VV P+Y KF 
Sbjct: 8   SKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFK 67

Query: 77  GVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLK 136
            VP  +L F+D KV E   K D H PP  K+  +                A E   + +K
Sbjct: 68  DVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYK--------ATEKAQSFVK 127

Query: 137 DSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYC 196
           ++ +G  K+ +  Y  T                   W +LNQ      +    LP A + 
Sbjct: 128 EARTGGPKAAF-NYAAT------EYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHF 187

Query: 197 TEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKD 234
           + +YN+ V   +  GY +  YLPLVP + I K + K+
Sbjct: 188 SSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEKE 209

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BLAST of Carg25029 vs. Swiss-Prot
Match: sp|Q9MA63|Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-60
Identity = 131/240 (54.58%), Postives = 175/240 (72.92%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA     +Q      + E+ERLKYL+FVQ AA  A   F  +Y  AK++ GPL+PGVE+V
Sbjct: 1   MATQTDLAQPKLDMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EG VK+VVGP+Y K+H VP+EVLK++D+KVD SVT++DR VPP +KQ S+          
Sbjct: 61  EGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                +A EVR  G+ ++ SG+ KSVY+KYE  XXXXXXXXXXXXXXXX  AW +LNQLP
Sbjct: 121 IVARALASEVRRAGVVETASGMAKSVYSKYEXXXXXXXXXXXXXXXXXXXXAWKKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           +FP +AQ  +PTA +C+EKYN+TV   ++KGY+V+SY+PLVPTERI+K+F++++ E EPL
Sbjct: 181 LFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of Carg25029 vs. Swiss-Prot
Match: sp|Q9SW70|SRP_VITRI (Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-56
Identity = 122/230 (53.04%), Postives = 158/230 (68.70%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA+S    Q        EE+RLKYL+FVQ AA     CF ++Y YAK   GPL+PGV+TV
Sbjct: 1   MAESEAKQQPE--TVHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVK+V+GP+Y KF+ VP E+L FVDRKV+ S+ +++RHVP  +K+AS           
Sbjct: 61  EGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EV+  G+ D+   I K+VY+K EPT XXXXXXXXXXX     SAW  LN+LP
Sbjct: 121 ELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAXXXXXXXXXXXEQYAVSAWRSLNRLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVF 231
           +FP VAQ ++PTA Y +EKYN++V  T+++GY V+ YLPL+PTERIAKVF
Sbjct: 181 LFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVF 228

[Close]

BLAST of Carg25029 vs. Swiss-Prot
Match: sp|A2Y0H2|Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017815 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 103/219 (47.03%), Postives = 136/219 (62.10%), Query Frame = 0


Query: 12  EMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPL 71
           EM A AEEERL+YLEFVQ AA +        Y YAK   GPLRPGV+ VEGTVK+VVGP+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLXXXXYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP +K+A                  A EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPG-----------LARSAAAEVR 144

Query: 132 HTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILP 191
             GL  + +G+ KS  A+ EP                 A AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVF 231
            A   + +YN  V   +K+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

[Close]

BLAST of Carg25029 vs. Swiss-Prot
Match: sp|Q9FRA7|Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 103/219 (47.03%), Postives = 136/219 (62.10%), Query Frame = 0


Query: 12  EMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPL 71
           EM A AEEERL+YLEFVQ AA +        Y YAK   GPLRPGV+ VEGTVK+VVGP+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLXXXXYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP +K+A                  A EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPG-----------LARSAAAEVR 144

Query: 132 HTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILP 191
             GL  + +G+ KS  A+ EP                 A AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVF 231
            A   + +YN  V   +K+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

[Close]

BLAST of Carg25029 vs. Swiss-Prot
Match: sp|Q41112|SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris OX=3885 GN=SRP PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-46
Identity = 99/190 (52.11%), Postives = 124/190 (65.26%), Query Frame = 0


Query: 42  VYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHV 101
           +Y YAK R GPL+PGV TVE  VK+VV P+Y++FH VP+E+LK+ DRKV E    +DRHV
Sbjct: 6   LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHV 65

Query: 102 PPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXX 161
           P  +K+ SS               V  EVR    +D VS   K+VY+KYEPT        
Sbjct: 66  PSNVKKVSS-----------QARSVVSEVR----RDGVSTFAKTVYSKYEPT-------- 125

Query: 162 XXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLV 221
                    SAW +LNQLP+FP VA A+LP A YCTEKYNE + S+++KGY+VS+YLPLV
Sbjct: 126 ---AEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLV 165

Query: 222 PTERIAKVFS 232
           PTE+IAKVFS
Sbjct: 186 PTEKIAKVFS 165

[Close]

BLAST of Carg25029 vs. TrEMBL
Match: tr|A0A0A0M1J0|A0A0A0M1J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569430 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 7.9e-94
Identity = 196/242 (80.99%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADS+ SSQ  +M  RA++  LKYLEFVQTAAFRATECFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVV PLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPT+KQASS          
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EVR  GLKDSVSGIVKSVYAKYEP+XXXXXXXXXXXXXXXX  AWH+LNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSXXXXXXXXXXXXXXXXXXAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTA YCTEKYNETV++++KKGYKVSSYLPLVPTERIAKVFSK+ +EMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of Carg25029 vs. TrEMBL
Match: tr|A0A1S3BP12|A0A1S3BP12_CUCME (REF/SRPP-like protein At3g05500 OS=Cucumis melo OX=3656 GN=LOC103492163 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 6.2e-83
Identity = 196/242 (80.99%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADS+ SSQ  +MA RA+E+RLKYLEFVQTAAFRATECFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MADSDHSSQRQDMAVRADEDRLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPL NKFHGVPIEVLKFVDRKVDESVTK              XXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLCNKFHGVPIEVLKFVDRKVDESVTKXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXX       +GLKDSVSGIVKSVYAKYEP+XXXXXXXXXXXXXXXX  AWH+LNQLP
Sbjct: 121 XXXXXXXXXXXRSGLKDSVSGIVKSVYAKYEPSXXXXXXXXXXXXXXXXXXAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTA YCTEKYNETV++++KKGYKVSSYLPLVPTERIAKVFSK+ +EMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of Carg25029 vs. TrEMBL
Match: tr|A0A218VRE9|A0A218VRE9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020220 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.3e-71
Identity = 152/224 (67.86%), Postives = 178/224 (79.46%), Query Frame = 0


Query: 18  EEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHG 77
           EEERLKYLEFVQ AA  A  CF N+YGYAK++ GPL+PGVETVEGTVK+VVGP+Y+KFH 
Sbjct: 13  EEERLKYLEFVQVAAVHAALCFLNLYGYAKDKSGPLKPGVETVEGTVKTVVGPVYDKFHD 72

Query: 78  VPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKD 137
           VPIEVLKFVDRK+DESVTK+D+ VPP +KQASS               +A EV+  G+ D
Sbjct: 73  VPIEVLKFVDRKIDESVTKLDKQVPPVVKQASSQAFSAAQRAPVAAQTMASEVKRAGVVD 132

Query: 138 SVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCT 197
           + SGI KSVY KYE  XXXXXXXXXXXXXXX AS W +LN+LP+FP VAQ  +PTA YC+
Sbjct: 133 TASGIAKSVYTKYEXXXXXXXXXXXXXXXXXAASTWRKLNRLPLFPQVAQVFVPTAAYCS 192

Query: 198 EKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPLV 242
           EKYNETV+S+++KGYKVS+YLPLVPTE+IAKVF  D  E EPLV
Sbjct: 193 EKYNETVRSSAEKGYKVSTYLPLVPTEKIAKVFRDDVPEAEPLV 236

[Close]

BLAST of Carg25029 vs. TrEMBL
Match: tr|A0A2I0J5K9|A0A2I0J5K9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028064 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.3e-71
Identity = 152/224 (67.86%), Postives = 178/224 (79.46%), Query Frame = 0


Query: 18  EEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHG 77
           EEERLKYLEFVQ AA  A  CF N+YGYAK++ GPL+PGVETVEGTVK+VVGP+Y+KFH 
Sbjct: 7   EEERLKYLEFVQVAAVHAALCFLNLYGYAKDKSGPLKPGVETVEGTVKTVVGPVYDKFHD 66

Query: 78  VPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKD 137
           VPIEVLKFVDRK+DESVTK+D+ VPP +KQASS               +A EV+  G+ D
Sbjct: 67  VPIEVLKFVDRKIDESVTKLDKQVPPVVKQASSQAFSAAQRAPVAAQTMASEVKRAGVVD 126

Query: 138 SVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCT 197
           + SGI KSVY KYE  XXXXXXXXXXXXXXX AS W +LN+LP+FP VAQ  +PTA YC+
Sbjct: 127 TASGIAKSVYTKYEXXXXXXXXXXXXXXXXXAASTWRKLNRLPLFPQVAQVFVPTAAYCS 186

Query: 198 EKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPLV 242
           EKYNETV+S+++KGYKVS+YLPLVPTE+IAKVF  D  E EPLV
Sbjct: 187 EKYNETVRSSAEKGYKVSTYLPLVPTEKIAKVFRDDVPEAEPLV 230

[Close]

BLAST of Carg25029 vs. TrEMBL
Match: tr|A0A2I4H1M9|A0A2I4H1M9_9ROSI (REF/SRPP-like protein At3g05500 OS=Juglans regia OX=51240 GN=LOC109012714 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.9e-69
Identity = 154/242 (63.64%), Postives = 179/242 (73.97%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA+ +  SQ   M    E+ RLKYLEFVQ A   A  CF N+Y YAK + GPL+PGVETV
Sbjct: 1   MAEGDLRSQ-DGMTREEEQMRLKYLEFVQVATIHAAVCFSNLYCYAKGKSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGP+Y+KFH VP+EVLK+VDRKVD SVT++DR VPP IKQASS          
Sbjct: 61  EGTVKSVVGPVYDKFHDVPVEVLKYVDRKVDASVTELDRRVPPIIKQASSQAFSAAQSAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EV+  G+ D+ SGI KSVY K EP XXXXXXXXXXXXX    SAW +LNQLP
Sbjct: 121 VVARAVASEVKRAGVVDTASGIAKSVYTKCEPXXXXXXXXXXXXXXQCAVSAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           +FP VAQ ++PTA YCTEKYN+TV+ T++KGYKVSSYLPLVPTE+IAKVF  D  E EPL
Sbjct: 181 LFPQVAQVVVPTAAYCTEKYNQTVRDTAEKGYKVSSYLPLVPTEKIAKVFRGDGSESEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

The following BLAST results are available for this feature:

BLAST of Carg25029 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933698.1	2.4e-110	96.69	REF/SRPP-like protein At3g05500 [Cucurbita moschata]	[more]
XP_023530281.1	4.1e-110	99.59	REF/SRPP-like protein At3g05500 [Cucurbita pepo subsp. pepo]	[more]
XP_022969922.1	7.2e-107	96.69	REF/SRPP-like protein At3g05500 [Cucurbita maxima]	[more]
XP_004135611.1	1.2e-93	80.99	PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus] >KGN66066.1 hypothe...	[more]
XP_022146027.1	5.2e-89	83.88	REF/SRPP-like protein At3g05500 [Momordica charantia]	[more]

BLAST of Carg25029 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05500.1	1.9e-61	54.58	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	9.8e-42	40.65	Rubber elongation factor protein (REF)	[more]
AT1G67360.2	1.4e-24	31.80	Rubber elongation factor protein (REF)	[more]

BLAST of Carg25029 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MA63\|Y3550_ARATH	3.4e-60	54.58	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=...	[more]
sp\|Q9SW70\|SRP_VITRI	5.1e-56	53.04	Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1	[more]
sp\|A2Y0H2\|Y5513_ORYSI	2.1e-49	47.03	REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_0...	[more]
sp\|Q9FRA7\|Y5513_ORYSJ	2.1e-49	47.03	REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic...	[more]
sp\|Q41112\|SRP_PHAVU	3.7e-46	52.11	Stress-related protein OS=Phaseolus vulgaris OX=3885 GN=SRP PE=2 SV=1	[more]

BLAST of Carg25029 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M1J0\|A0A0A0M1J0_CUCSA	7.9e-94	80.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569430 PE=4 SV=1	[more]
tr\|A0A1S3BP12\|A0A1S3BP12_CUCME	6.2e-83	80.99	REF/SRPP-like protein At3g05500 OS=Cucumis melo OX=3656 GN=LOC103492163 PE=4 SV=...	[more]
tr\|A0A218VRE9\|A0A218VRE9_PUNGR	9.3e-71	67.86	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020220 PE=4 SV=1	[more]
tr\|A0A2I0J5K9\|A0A2I0J5K9_PUNGR	9.3e-71	67.86	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028064 PE=4 SV=1	[more]
tr\|A0A2I4H1M9\|A0A2I4H1M9_9ROSI	3.9e-69	63.64	REF/SRPP-like protein At3g05500 OS=Juglans regia OX=51240 GN=LOC109012714 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008802	REF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25029-RA	Carg25029-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 17..231 e-value: 5.7E-89 score: 297.3
IPR008802	Rubber elongation factor	PANTHER	PTHR33732	FAMILY NOT NAMED	coord: 1..240
None	No IPR available	PANTHER	PTHR33732:SF3	SUBFAMILY NOT NAMED	coord: 1..240

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25029	Cla005222	Watermelon (97103) v1	carwmB0236
Carg25029	Csa1G569430	Cucumber (Chinese Long) v2	carcuB0273
Carg25029	MELO3C015310	Melon (DHL92) v3.5.1	carmeB0249
Carg25029	ClCG03G017110	Watermelon (Charleston Gray)	carwcgB0239
Carg25029	CSPI01G26490	Wild cucumber (PI 183967)	carcpiB0277
Carg25029	Cucsa.181940	Cucumber (Gy14) v1	carcgyB0290
Carg25029	CmaCh11G011370	Cucurbita maxima (Rimu)	carcmaB0342
Carg25029	CmaCh10G011190	Cucurbita maxima (Rimu)	carcmaB0341
Carg25029	CmoCh11G011790	Cucurbita moschata (Rifu)	carcmoB0346
Carg25029	CmoCh10G011980	Cucurbita moschata (Rifu)	carcmoB0345
Carg25029	Lsi06G001150	Bottle gourd (USVL1VR-Ls)	carlsiB221
Carg25029	Cp4.1LG18g00510	Cucurbita pepo (Zucchini)	carcpeB0346
Carg25029	Cp4.1LG04g00510	Cucurbita pepo (Zucchini)	carcpeB0347
Carg25029	CsGy1G025730	Cucumber (Gy14) v2	carcgybB0260
Carg25029	MELO3C015310.2	Melon (DHL92) v3.6.1	carmedB0258
Carg25029	CsaV3_1G038850	Cucumber (Chinese Long) v3	carcucB0276
Carg25029	Cla97C03G067450	Watermelon (97103) v2	carwmbB0253
Carg25029	Bhi02G001756	Wax gourd	carwgoB0315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25029	Wax gourd	carwgoB0314