CSPI01G26490 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G26490
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Rubber elongation factor
Location	Chr1 : 21667382 .. 21669306 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTGAATAGTAATGAAGAGAATTCTAGAACCGTCCATTACTCGGATCCTTTCATCACGAACTTAACCGCTAAGGAACAGTCAACGACGTCCCTTCCGCTTTCTAAATCTACGTTTCCTCAAAACCTTCCAATTTCCCATCAATGGGCCGTCCGTTCTCACCGACTCCATTGCCGCGTTCTTCTCCTCTATAAATCCTCACTTTCCCCCTTTTTCCCTTTCCATCCATCCCTCCCTCCGTTGTATCTCCAACCATTTTCCATTCTATTTCTCCGATTACATCTTCTTCTTTTCCATTTCCGATATCAATTTTCCCTATGGCTGATTCCGATCTTTCATCGCAGCGCCAAGACATGCCGGTTAGGGCTGACCAGGGGAGCCTGAAGTATTTGGAATTTGTTCAAACGGCGGCGTTTCGAGCAACCGAGTGTTTCTTTAATGTTTATGGGTATGCGAAAGACAGGTCCGGTCCGTTGAAGCCCGGCGTTGAGACTGTTGAGGGCACTGTGAAATCCGTTGTTGCTCCTTTGTATAACAAGTTTCATGGCGTCCCGATTGAGGTTCTCAAATTCGTCGATCGCAAGGTTTCTTCTTAATCCCTCGAGTTTTATTCTCTAACATAATTCTCTTTCGTTTCTTCTTGGCTGGATGAATATATATTAGGTTAAATTTAGAATTTTGTATTTATGGTTTGTAATTATGGCTTACTTTGTATGATTTCTGGAGGATTTTATAAAATTTATGAGATTGTATACAATGTCATGCTTTCGTACTTTCGTATTCAAAATGGAGTCTGTACCAATTTTGCATTAGAAAGGCCCCAAGATGGATGATGGATAGTTTGTGTGTTGAAACACTTGTTATAATAGGAATTCGAAAAATTGAGTATTGAATTGAGATCGGGGCTGAACAACCGTAATTCGTTAAAGGAAACTTGATGTTTGTAGAAATTGATCTAAATTTCAGAGTCTGCAAGGGTTAGAATTGAGATTAGAAAGATTGATGTTGAAATTACAAGTAGAAAGATTTTCTGTAGTTAATCAAAGACTCAAAGCCTATGCTATTTCGCTTGAAATGATGCCAAGAACTGATGAGCATTGAGCATTAGAACATTGCGAAACAGTTTAGTTCACAGGAAACTTACTTTGTTTAATTGTAAATATGATCAGGTGGACGAGTCAGTGACGAAGATCGACCGCCACGTTCCTCCAACAGTCAAGCAGGCCTCATCACAAGCCATGTTTGCTGCACAGCAGGCACCTGAAGTCGCACGAAGCGTAGCCTCTGAGGTCCGACGCGCTGGCCTCAAAGACTCCGTGTCTGGGATTGTGAAATCTGTGTATGCCAAGTACGAGCCAAGCGCAAAGCAACTCTACTCCAAATACGAGCCCAAGGCCGAGCAGTGCGCAGCTTCAGCATGGCACAAGCTCAACCAGCTTCCTGTCTTCCCCACGGTTGCACAGGCCATCTTGCCAACAGCAGCTTACTGCACAGAGAAATACAACGAGACGGTACGAACCTCGGCCAAGAAAGGATACAAGGTCTCTTCATATCTACCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGAACGGAGTTGAGATGGAGCCCTTGGTGAATTAAGACCCAAACCTGCTTCTTTTTTCTTTTATGATATTGTAAGAAAAAAAAAACACATTATGAATGTTTGGGAACTTATTCAGTGGTTATGTCACGTTTTGTTTTGTTAATATCTCGAAGTTAAGAGTTTGTACTTGTATTCGTCGTCGTGGTAGTCATCGACGAATCTACTTAGGGGCCAGAGTCGCACTTGACTCTCATTTGGTTGGTTTTTGTATTTTTAATATATATTTTAAATGCCTTCTAATAATATATACACAAAAATTCAACATAACTAATCAAATGGTGATGTAGT

mRNA sequence

ATGGCTGATTCCGATCTTTCATCGCAGCGCCAAGACATGCCGGTTAGGGCTGACCAGGGGAGCCTGAAGTATTTGGAATTTGTTCAAACGGCGGCGTTTCGAGCAACCGAGTGTTTCTTTAATGTTTATGGGTATGCGAAAGACAGGTCCGGTCCGTTGAAGCCCGGCGTTGAGACTGTTGAGGGCACTGTGAAATCCGTTGTTGCTCCTTTGTATAACAAGTTTCATGGCGTCCCGATTGAGGTTCTCAAATTCGTCGATCGCAAGGTGGACGAGTCAGTGACGAAGATCGACCGCCACGTTCCTCCAACAGTCAAGCAGGCCTCATCACAAGCCATGTTTGCTGCACAGCAGGCACCTGAAGTCGCACGAAGCGTAGCCTCTGAGGTCCGACGCGCTGGCCTCAAAGACTCCGTGTCTGGGATTGTGAAATCTGTGTATGCCAAGTACGAGCCAAGCGCAAAGCAACTCTACTCCAAATACGAGCCCAAGGCCGAGCAGTGCGCAGCTTCAGCATGGCACAAGCTCAACCAGCTTCCTGTCTTCCCCACGGTTGCACAGGCCATCTTGCCAACAGCAGCTTACTGCACAGAGAAATACAACGAGACGGTACGAACCTCGGCCAAGAAAGGATACAAGGTCTCTTCATATCTACCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGAACGGAGTTGAGATGGAGCCCTTGGTGAATTAA

Coding sequence (CDS)

ATGGCTGATTCCGATCTTTCATCGCAGCGCCAAGACATGCCGGTTAGGGCTGACCAGGGGAGCCTGAAGTATTTGGAATTTGTTCAAACGGCGGCGTTTCGAGCAACCGAGTGTTTCTTTAATGTTTATGGGTATGCGAAAGACAGGTCCGGTCCGTTGAAGCCCGGCGTTGAGACTGTTGAGGGCACTGTGAAATCCGTTGTTGCTCCTTTGTATAACAAGTTTCATGGCGTCCCGATTGAGGTTCTCAAATTCGTCGATCGCAAGGTGGACGAGTCAGTGACGAAGATCGACCGCCACGTTCCTCCAACAGTCAAGCAGGCCTCATCACAAGCCATGTTTGCTGCACAGCAGGCACCTGAAGTCGCACGAAGCGTAGCCTCTGAGGTCCGACGCGCTGGCCTCAAAGACTCCGTGTCTGGGATTGTGAAATCTGTGTATGCCAAGTACGAGCCAAGCGCAAAGCAACTCTACTCCAAATACGAGCCCAAGGCCGAGCAGTGCGCAGCTTCAGCATGGCACAAGCTCAACCAGCTTCCTGTCTTCCCCACGGTTGCACAGGCCATCTTGCCAACAGCAGCTTACTGCACAGAGAAATACAACGAGACGGTACGAACCTCGGCCAAGAAAGGATACAAGGTCTCTTCATATCTACCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGAACGGAGTTGAGATGGAGCCCTTGGTGAATTAA

Homology

[Close]

BLAST of CSPI01G26490 vs. Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-79
Identity = 147/237 (62.03%), Postives = 193/237 (81.43%), Query Frame = 1


Query: 4   SDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGT 63
           +DL+  + DM  + ++  LKYL+FVQ AA  A   F  +Y  AKD+SGPLKPGVE+VEG 
Sbjct: 5   TDLAQPKLDM-TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGA 64

Query: 64  VKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVA 123
           VK+VV P+Y K+H VP+EVLK++D+KVD SVT++DR VPP VKQ S+QA+ AAQ AP VA
Sbjct: 65  VKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVA 124

Query: 124 RSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFP 183
           R++ASEVRRAG+ ++ SG+ KSVY+KYEP+AK+LY+ YEPKAEQCA SAW KLNQLP+FP
Sbjct: 125 RALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFP 184

Query: 184 TVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 241
            +AQ  +PTAA+C+EKYN+TV  +A+KGY+V+SY+PLVPTERI+K+F++   E EPL
Sbjct: 185 RLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

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BLAST of CSPI01G26490 vs. Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 133/230 (57.83%), Postives = 179/230 (77.83%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA+S+  +++Q   V  ++  LKYL+FVQ AA     CF ++Y YAK+ SGPLKPGV+TV
Sbjct: 1   MAESE--AKQQPETVHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK+V+ P+Y KF+ VP E+L FVDRKV+ S+ +++RHVP  VK+AS QA+  AQ+AP
Sbjct: 61  EGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           E+A +VASEV+R G+ D+   I K+VY+K EP+AK+L SKYEP AEQ A SAW  LN+LP
Sbjct: 121 ELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVF 231
           +FP VAQ ++PTAAY +EKYN++V  +A++GY V+ YLPL+PTERIAKVF
Sbjct: 181 LFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVF 228

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BLAST of CSPI01G26490 vs. Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-56
Identity = 112/219 (51.14%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 12  DMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPL 71
           +M   A++  L+YLEFVQ AA +        Y YAK  +GPL+PGV+ VEGTVK+VV P+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP VK+A           P +ARS A+EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEA-----------PGLARSAAAEVR 144

Query: 132 RAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILP 191
           +AGL  + +G+ KS  A+ EP A+ LY++YEP AE+ AA AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVF 231
            AA  + +YN  V   AK+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

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BLAST of CSPI01G26490 vs. Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-56
Identity = 112/219 (51.14%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 12  DMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPL 71
           +M   A++  L+YLEFVQ AA +        Y YAK  +GPL+PGV+ VEGTVK+VV P+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP VK+A           P +ARS A+EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEA-----------PGLARSAAAEVR 144

Query: 132 RAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILP 191
           +AGL  + +G+ KS  A+ EP A+ LY++YEP AE+ AA AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVF 231
            AA  + +YN  V   AK+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

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BLAST of CSPI01G26490 vs. Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-54
Identity = 115/192 (59.90%), Postives = 137/192 (71.35%), Query Frame = 1


Query: 42  VYGYAKDRSGPLKPGVETVEGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHV 101
           +Y YAK+R+GPLKPGV TVE  VK+VVAP+Y++FH VP+E+LK+ DRKV E    +DRHV
Sbjct: 6   LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHV 65

Query: 102 PPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKY 161
           P  VK+ SSQA           RSV SEVRR G+                  AK +YSKY
Sbjct: 66  PSNVKKVSSQA-----------RSVVSEVRRDGVSTF---------------AKTVYSKY 125

Query: 162 EPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLV 221
           EP AEQCA SAW KLNQLP+FP VA A+LP AAYCTEKYNE + +SA+KGY+VS+YLPLV
Sbjct: 126 EPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLV 167

Query: 222 PTERIAKVFSKN 234
           PTE+IAKVFS N
Sbjct: 186 PTEKIAKVFSGN 167

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BLAST of CSPI01G26490 vs. TrEMBL
Match: A0A0A0M1J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569430 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 2.8e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of CSPI01G26490 vs. TrEMBL
Match: A0A0B0Q0B4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12676 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.5e-86
Identity = 164/242 (67.77%), Postives = 198/242 (81.82%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+RSGPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERSGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK VV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKCVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRRVPPVIKQVSTEAISAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AKQLY+KYEPKAEQCA SAW KLN+LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKQLYAKYEPKAEQCAVSAWRKLNKLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EMEPL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

[Close]

BLAST of CSPI01G26490 vs. TrEMBL
Match: A0A059D3C5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01915 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.6e-86
Identity = 165/241 (68.46%), Postives = 194/241 (80.50%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA+SDL+  RQ    + ++  +KYLEFVQ AA     CF +VY YAK+RSGPLK GVETV
Sbjct: 1   MAESDLN--RQQEMTKEEEQRMKYLEFVQVAAVHTALCFVSVYAYAKERSGPLKSGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK+VV P+Y KFH VPIEVLKFVDRK+DESVTKID  VPP VKQ S+QAMFAAQQAP
Sbjct: 61  EGTVKTVVGPVYVKFHDVPIEVLKFVDRKIDESVTKIDSRVPPVVKQVSAQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
             A+++A EV+RAG+ D+ SGI KSVY K EP+AK LYSKYEPK E+CA SAW KLNQLP
Sbjct: 121 VAAQAMAHEVKRAGVVDTASGIAKSVYTKCEPTAKGLYSKYEPKMEKCAVSAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           + P V Q ++PTAAYCTEKYNETVR +A+KGYKVS+YLP+VPTERIAKVF     EM+PL
Sbjct: 181 LVPHVTQVVMPTAAYCTEKYNETVRNTAEKGYKVSNYLPIVPTERIAKVFMGGAPEMQPL 239

Query: 241 V 242
           +
Sbjct: 241 L 239

[Close]

BLAST of CSPI01G26490 vs. TrEMBL
Match: A0A0D2PGY1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300000 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 162/242 (66.94%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+R GPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERLGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKSVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRQVPPVIKQVSTEAILAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AK+LY+KYEPKAEQCA SAW KLN LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKELYAKYEPKAEQCAVSAWRKLNMLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EM+PL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMQPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

[Close]

BLAST of CSPI01G26490 vs. TrEMBL
Match: C9E7B4_MORAL (Rubber elongation factor OS=Morus alba PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 8.1e-85
Identity = 160/242 (66.12%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S  +Q    +A++  LKYLEF+Q A         N+YG AK++SGPLKPGVETV
Sbjct: 1   MAQEDSSFPQQMDKDKAEEQRLKYLEFIQVAVIHTIVYLSNLYGKAKEKSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV P+Y K + +PIE+LKF+DRKVD SVT++DRHVP T+KQ SSQA  AAQ+AP
Sbjct: 61  EGTVKSVVGPVYEKVYDIPIELLKFIDRKVDASVTELDRHVPATLKQVSSQAFSAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVARS+ASEV+RAG+KD+ SGI K+V+ KYEP+AK+LY+KYEPKAEQCA +AW KLNQLP
Sbjct: 121 EVARSLASEVQRAGVKDTASGIAKTVFTKYEPAAKELYAKYEPKAEQCAVTAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAY TEKYN+TV ++A+KGYKVSSYLPLVP E+I KVFS+NG E EPL
Sbjct: 181 LFPKVADVVVPTAAYYTEKYNQTVISTAEKGYKVSSYLPLVPVEKIVKVFSENGAEFEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 242

[Close]

BLAST of CSPI01G26490 vs. TAIR10
Match: AT3G05500.1 (AT3G05500.1 Rubber elongation factor protein (REF))

HSP 1 Score: 297.4 bits (760), Expect = 8.3e-81
Identity = 147/237 (62.03%), Postives = 193/237 (81.43%), Query Frame = 1


Query: 4   SDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGT 63
           +DL+  + DM  + ++  LKYL+FVQ AA  A   F  +Y  AKD+SGPLKPGVE+VEG 
Sbjct: 5   TDLAQPKLDM-TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGA 64

Query: 64  VKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVA 123
           VK+VV P+Y K+H VP+EVLK++D+KVD SVT++DR VPP VKQ S+QA+ AAQ AP VA
Sbjct: 65  VKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVA 124

Query: 124 RSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFP 183
           R++ASEVRRAG+ ++ SG+ KSVY+KYEP+AK+LY+ YEPKAEQCA SAW KLNQLP+FP
Sbjct: 125 RALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFP 184

Query: 184 TVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 241
            +AQ  +PTAA+C+EKYN+TV  +A+KGY+V+SY+PLVPTERI+K+F++   E EPL
Sbjct: 185 RLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of CSPI01G26490 vs. TAIR10
Match: AT2G47780.1 (AT2G47780.1 Rubber elongation factor protein (REF))

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 97/216 (44.91%), Postives = 135/216 (62.50%), Query Frame = 1


Query: 18  DQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPLYNKFHG 77
           D+  LK+LEF+Q AA     CF  +Y  AKD +GPLK GVE +E  V++V+APLY KFH 
Sbjct: 37  DEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHD 96

Query: 78  VPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKD 137
           VP ++L FVDRKVD+    ++ +VP  VKQASSQA+           +VA+EV+R G+ D
Sbjct: 97  VPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVD 156

Query: 138 SVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCT 197
           +   I +SV  KYEP+A           E  AA+ W  LNQLP+FP VA  ++PTA Y +
Sbjct: 157 TTKSIARSVRDKYEPAA-----------EYYAATLWRLLNQLPLFPEVAHLVIPTAFYWS 216

Query: 198 EKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKN 234
           EKYN+ VR    + Y  + YLP++P E+I+ +  ++
Sbjct: 217 EKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQD 230

[Close]

BLAST of CSPI01G26490 vs. TAIR10
Match: AT1G67360.2 (AT1G67360.2 Rubber elongation factor protein (REF))

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-29
Identity = 79/212 (37.26%), Postives = 103/212 (48.58%), Query Frame = 1


Query: 21  SLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPLYNKFHGVPI 80
           +LK+L FV+ A         N+Y YAK  SGPLK  VE VEG V +VV P+Y KF  VP 
Sbjct: 12  ALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPD 71

Query: 81  EVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRRAGLKDSVS 140
            +L F+D KV E   K D H PP  K+  +QA     +A E A+S   E R  G K + +
Sbjct: 72  SLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFN 131

Query: 141 GIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPTAAYCTEKY 200
                 YA  E         Y+      +   W KLNQ      +    LP AA+ + +Y
Sbjct: 132 ------YAATE---------YKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRY 191

Query: 201 NETVRTSAKKGYKVSSYLPLVPTERIAKVFSK 233
           N+ V      GY +  YLPLVP + I K + K
Sbjct: 192 NDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208

[Close]

BLAST of CSPI01G26490 vs. NCBI nr
Match: gi|449435657|ref|XP_004135611.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus])

HSP 1 Score: 472.6 bits (1215), Expect = 4.1e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of CSPI01G26490 vs. NCBI nr
Match: gi|659099505|ref|XP_008450634.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis melo])

HSP 1 Score: 448.7 bits (1153), Expect = 6.3e-123
Identity = 231/242 (95.45%), Postives = 234/242 (96.69%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MADSD SSQRQDM VRAD+  LKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV
Sbjct: 1   MADSDHSSQRQDMAVRADEDRLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV PL NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVK ASSQAM AAQQAP
Sbjct: 61  EGTVKSVVGPLCNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKHASSQAMSAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR+VASEVRR+GLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP
Sbjct: 121 EVARNVASEVRRSGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of CSPI01G26490 vs. NCBI nr
Match: gi|728850786|gb|KHG30229.1| (hypothetical protein F383_12676 [Gossypium arboreum])

HSP 1 Score: 326.6 bits (836), Expect = 3.6e-86
Identity = 164/242 (67.77%), Postives = 198/242 (81.82%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+RSGPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERSGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK VV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKCVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRRVPPVIKQVSTEAISAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AKQLY+KYEPKAEQCA SAW KLN+LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKQLYAKYEPKAEQCAVSAWRKLNKLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EMEPL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

[Close]

BLAST of CSPI01G26490 vs. NCBI nr
Match: gi|702268065|ref|XP_010043058.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Eucalyptus grandis])

HSP 1 Score: 325.5 bits (833), Expect = 8.0e-86
Identity = 165/241 (68.46%), Postives = 194/241 (80.50%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA+SDL+  RQ    + ++  +KYLEFVQ AA     CF +VY YAK+RSGPLK GVETV
Sbjct: 1   MAESDLN--RQQEMTKEEEQRMKYLEFVQVAAVHTALCFVSVYAYAKERSGPLKSGVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVK+VV P+Y KFH VPIEVLKFVDRK+DESVTKID  VPP VKQ S+QAMFAAQQAP
Sbjct: 61  EGTVKTVVGPVYVKFHDVPIEVLKFVDRKIDESVTKIDSRVPPVVKQVSAQAMFAAQQAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
             A+++A EV+RAG+ D+ SGI KSVY K EP+AK LYSKYEPK E+CA SAW KLNQLP
Sbjct: 121 VAAQAMAHEVKRAGVVDTASGIAKSVYTKCEPTAKGLYSKYEPKMEKCAVSAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           + P V Q ++PTAAYCTEKYNETVR +A+KGYKVS+YLP+VPTERIAKVF     EM+PL
Sbjct: 181 LVPHVTQVVMPTAAYCTEKYNETVRNTAEKGYKVSNYLPIVPTERIAKVFMGGAPEMQPL 239

Query: 241 V 242
           +
Sbjct: 241 L 239

[Close]

BLAST of CSPI01G26490 vs. NCBI nr
Match: gi|823197092|ref|XP_012434168.1| (PREDICTED: REF/SRPP-like protein At3g05500 [Gossypium raimondii])

HSP 1 Score: 324.3 bits (830), Expect = 1.8e-85
Identity = 162/242 (66.94%), Postives = 197/242 (81.40%), Query Frame = 1


Query: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60
           MA  D S+ +QDM    ++  LKYLEFVQ AA  A  CF N+Y YAK+R GPLKP VETV
Sbjct: 1   MAQGD-SNFQQDMAKEEEEQRLKYLEFVQVAAVHAALCFTNLYLYAKERLGPLKPSVETV 60

Query: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120
           EGTVKSVV P+Y+K+H VP+E LKFVD KV ESVTK+DR VPP +KQ S++A+ AAQ+AP
Sbjct: 61  EGTVKSVVGPVYDKYHDVPVEFLKFVDSKVGESVTKLDRQVPPVIKQVSTEAILAAQKAP 120

Query: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLP 180
           EVAR VASEV RAG+ ++ SG+ KSVY KYEP+AK+LY+KYEPKAEQCA SAW KLN LP
Sbjct: 121 EVARGVASEVHRAGVVNTASGLAKSVYTKYEPTAKELYAKYEPKAEQCAVSAWRKLNMLP 180

Query: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240
           +FP VA  ++PTAAYC++KYNETV +SA+KGYKV+SYLPLVPTE+IAKVF +   EM+PL
Sbjct: 181 LFPQVASVVVPTAAYCSDKYNETVVSSAEKGYKVASYLPLVPTEKIAKVFGEQTTEMQPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

The following BLAST results are available for this feature:

BLAST of CSPI01G26490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3550_ARATH	1.5e-79	62.03	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1	[more]
SRP_VITRI	1.8e-69	57.83	Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1	[more]
Y5513_ORYSI	5.1e-56	51.14	REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=...	[more]
Y5513_ORYSJ	5.1e-56	51.14	REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic...	[more]
SRP_PHAVU	1.6e-54	59.90	Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1	[more]

BLAST of CSPI01G26490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1J0_CUCSA	2.8e-130	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569430 PE=4 SV=1	[more]
A0A0B0Q0B4_GOSAR	2.5e-86	67.77	Uncharacterized protein OS=Gossypium arboreum GN=F383_12676 PE=4 SV=1	[more]
A0A059D3C5_EUCGR	5.6e-86	68.46	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01915 PE=4 SV=1	[more]
A0A0D2PGY1_GOSRA	1.2e-85	66.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300000 PE=4 SV=1	[more]
C9E7B4_MORAL	8.1e-85	66.12	Rubber elongation factor OS=Morus alba PE=2 SV=1	[more]

BLAST of CSPI01G26490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05500.1	8.3e-81	62.03	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	1.1e-45	44.91	Rubber elongation factor protein (REF)	[more]
AT1G67360.2	2.5e-29	37.26	Rubber elongation factor protein (REF)	[more]

BLAST of CSPI01G26490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435657\|ref\|XP_004135611.1\|	4.1e-130	100.00	PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus]	[more]
gi\|659099505\|ref\|XP_008450634.1\|	6.3e-123	95.45	PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis melo]	[more]
gi\|728850786\|gb\|KHG30229.1\|	3.6e-86	67.77	hypothetical protein F383_12676 [Gossypium arboreum]	[more]
gi\|702268065\|ref\|XP_010043058.1\|	8.0e-86	68.46	PREDICTED: REF/SRPP-like protein At3g05500 [Eucalyptus grandis]	[more]
gi\|823197092\|ref\|XP_012434168.1\|	1.8e-85	66.94	PREDICTED: REF/SRPP-like protein At3g05500 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008802	REF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019915	lipid storage
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0008150	biological_process
biological_process	GO:0051179	localization
biological_process	GO:0080186	developmental vegetative growth
biological_process	GO:0034389	lipid particle organization
biological_process	GO:0045927	positive regulation of growth
biological_process	GO:1902584	positive regulation of response to water deprivation
cellular_component	GO:0005811	lipid particle
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G26490.1	CSPI01G26490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 18..231 score: 3.5
None	No IPR available	PANTHER	PTHR33732	FAMILY NOT NAMED	coord: 1..240 score: 4.4E
None	No IPR available	PANTHER	PTHR33732:SF3	SUBFAMILY NOT NAMED	coord: 1..240 score: 4.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G26490	Cla005222	Watermelon (97103) v1	cpiwmB022
CSPI01G26490	Csa1G569430	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G26490	MELO3C015310	Melon (DHL92) v3.5.1	cpimeB042
CSPI01G26490	ClCG03G017110	Watermelon (Charleston Gray)	cpiwcgB049
CSPI01G26490	Lsi06G001150	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G26490	MELO3C015310.2	Melon (DHL92) v3.6.1	cpimedB036
CSPI01G26490	CsaV3_1G038850	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G26490	Cla97C03G067450	Watermelon (97103) v2	cpiwmbB043
CSPI01G26490	Bhi02G001756	Wax gourd	cpiwgoB109
CSPI01G26490	Cucsa.181940	Cucumber (Gy14) v1	cgycpiB288
CSPI01G26490	CmaCh11G011370	Cucurbita maxima (Rimu)	cmacpiB100
CSPI01G26490	CmaCh10G011190	Cucurbita maxima (Rimu)	cmacpiB061
CSPI01G26490	CmoCh10G011980	Cucurbita moschata (Rifu)	cmocpiB055
CSPI01G26490	CmoCh11G011790	Cucurbita moschata (Rifu)	cmocpiB092
CSPI01G26490	Cp4.1LG04g00510	Cucurbita pepo (Zucchini)	cpecpiB659
CSPI01G26490	Cp4.1LG18g00510	Cucurbita pepo (Zucchini)	cpecpiB354
CSPI01G26490	CsGy1G025730	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G26490	Carg25029	Silver-seed gourd	carcpiB0277

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G26490	Cucumber (Chinese Long) v3	cpicucB033
CSPI01G26490	Watermelon (97103) v2	cpiwmbB066
CSPI01G26490	Wax gourd	cpiwgoB016
CSPI01G26490	Wax gourd	cpiwgoB084
CSPI01G26490	Wild cucumber (PI 183967)	cpicpiB013
CSPI01G26490	Wild cucumber (PI 183967)	cpicpiB021
CSPI01G26490	Cucumber (Gy14) v1	cgycpiB376
CSPI01G26490	Cucurbita maxima (Rimu)	cmacpiB160
CSPI01G26490	Cucurbita moschata (Rifu)	cmocpiB147
CSPI01G26490	Cucumber (Chinese Long) v2	cpicuB023
CSPI01G26490	Cucumber (Chinese Long) v2	cpicuB029
CSPI01G26490	Melon (DHL92) v3.5.1	cpimeB073
CSPI01G26490	Melon (DHL92) v3.5.1	cpimeB080
CSPI01G26490	Watermelon (Charleston Gray)	cpiwcgB069
CSPI01G26490	Watermelon (97103) v1	cpiwmB041
CSPI01G26490	Watermelon (97103) v1	cpiwmB073
CSPI01G26490	Cucurbita pepo (Zucchini)	cpecpiB088
CSPI01G26490	Cucurbita pepo (Zucchini)	cpecpiB808
CSPI01G26490	Bottle gourd (USVL1VR-Ls)	cpilsiB058