Carg25029-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25029-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rubber elongation factor protein (REF)
Location	Cucurbita_argyrosperma_scaffold_176 : 241103 .. 243499 (-)
Sequence length	1645

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGACTTTCTAGATCTACGCTCCCATTGAGCTTCCAGTTTCCACCATGGCCGTCCGTTTCGACCGACTCTCAACCTGCGTTCTTCTCACCTATAAATTCCCTTTCTTCTCCTTCTCCCTCTTCCATCGATTCTATCGCTAAGCATTTTGATTTCCCTACAAAATCAAACATCAAATCGCATCTTTCTTCCGTTTTCCATCTCGAGCTCCTCTTGAGTTTCCCCCACGTTTTTTCGCTATGGCTGATTCCAATCCTTCGTCGCAGCACCATGAAATGGTACGATTCTCTCATCACTCGAATTTCTTGCGGTTTTTATTTTTGATCTAATTGGATTTGTCGATTTTGTGCGGAATTTCTGTTTTCTGAGATTGTGAGGATTGATCGATTGGATTTTGTGTAGGCGGCTAGGGCAGAGGAGGAGAGGCTGAAGTATTTGGAGTTTGTTCAAACGGCGGCGTTTCGAGCGACGGAGTGTTTCTTCAACGTTTATGGCTATGCGAAGAACCGGATTGGTCCACTGAGGCCCGGCGTTGAGACTGTCGAGGGCACTGTGAAGTCTGTTGTCGGTCCTTTGTACAATAAGTTCCACGGCGTTCCGATTGAGGTTCTTAAGTTCGTCGATCGCAAGGTTGGTTTTCTTTCTTCTATTACTGTTCTATGCATGTTCTTCATATAAATTTCTCTTCGTTTTCTTCTCGGATTGATTTATCAGATGCCTTTGGTTAATTATCAATTTCAGCCTATGGATTAAAACTTCTCAATTAAGTAGTTCTATGGAAAGTATAATGACTTTTTGTGGAGATTAAATTTCTAATATACTGTAGACTTTTCGTTTTGGTCCTTGAACTCTGTTTATACTTTCCCTTAGCATGGCTTCAAGTATCTTTGTTGAATATGGACATGTTACATGTATAAGGCTGAGTATTATTTGAGTTCATGCTAGAAGGATCGAAATGAGTGTTCTCTAAAAAGTTCAAGGATCAAATGAAGATTATACCAATTTTGTAGTTGAAATATCTGAATGGAATTCAAATCAGTTTGTTCATACAAAGTTGATATGTTAGGTAGCATTTTGTGCGCATTTCGAATTCTAATGGAAGAACGTGATGAGAAAACTGAGAATTTACAGGATTGAGGTTGAGATTAGCAAGATGGATTTTGTTTAGTTAGTTCTTTCCCTTTGGAATGATGCAAATAACCAAACGTTGAATGCTAAAACACTGAGAAACTTATTTTCTTTGATTGTTAATGTATAGGTTGACGAGTCGGTGACCAAGATCGATCGGCATGTACCGCCAACCATCAAGCAAGCCTCATCGCAGGCCATGTCCGCCGCACAGCAAGCGCCTGAAATTGCCCGAAATGTAGCCTTGGAGGTCAGACACACTGGCCTTAAAGACTCTGTCTCTGGCATTGTGAAATCTGTGTATGCCAAGTACGAGCCAACTGCTAAGCAACTCTACTCCAAATACGAGCCGAAGGCCGAGCAATGCGCAGCTTCGGCATGGCACAGACTCAACCAGCTCCCTGTTTTCCCCACTGTCGCACAAGCCATCTTGCCAACTGCAGTGTACTGCACCGAGAAATACAACGAGACCGTGCAAAGCACCTCCAAGAAGGGCTACAAGGTCTCTTCGTACCTCCCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGGACAGAATTGAGATGGAGCCCTTGGTGAACTGAGAGCCCTTGGATTTCCTGGTTTCGAAATAACACATCATGAATGTTTTTGTTGAACGGAGGCACACTTACATGTTGGTGTTGTCATCCTCTCTGAGCCTTGTGTTGTTTTGGCTTCAGATATAGCTATGGCTTTTATGTTTCTTCTTTGGTAAGAGATATTAGTTACACAGGTTTGATATTATATTTGAAGGCTTAATTAATTCCTAGTCTTTGTTTGAGATTTACTTTCTTCCTGCGTATAACATTAGATGGAAAAAATATTTTAATATTTTTCCTAAGGTGAGAAAGCTTCTCCCAAAAGACCGTTTTAAATTCATGAGGCTAATAGCCATATGTGACAGACCAGAATGGATAATATCGACTGGCGGTAGACTTTAGCTGTAGAGTCGACTCTTTATACAAATTTTTAGTGCAGAAGTTTTCGTCCATTTCGCTAACTCGTTCCATTTGTCATTGATATTTTTTTGTCTAAATTCATGCACTTGATATTTTCACGAAAGGATAATGTTTAGAAATTTTGTAGTAATACCTGGACAGTATCGCAAACCAAATAACACAATCATACTAACCAAACTAAGAAGAAAGTAGATGGTGATGACTTTCATGTGCAAACAAGATAGAAGGCAACACGTGAATGACGCCCATCGAATTACATTAAGGTCATGATAGATAAGTAT

mRNA sequence

ATTTGACTTTCTAGATCTACGCTCCCATTGAGCTTCCAGTTTCCACCATGGCCGTCCGTTTCGACCGACTCTCAACCTGCGTTCTTCTCACCTATAAATTCCCTTTCTTCTCCTTCTCCCTCTTCCATCGATTCTATCGCTAAGCATTTTGATTTCCCTACAAAATCAAACATCAAATCGCATCTTTCTTCCGTTTTCCATCTCGAGCTCCTCTTGAGTTTCCCCCACGTTTTTTCGCTATGGCTGATTCCAATCCTTCGTCGCAGCACCATGAAATGGCGGCTAGGGCAGAGGAGGAGAGGCTGAAGTATTTGGAGTTTGTTCAAACGGCGGCGTTTCGAGCGACGGAGTGTTTCTTCAACGTTTATGGCTATGCGAAGAACCGGATTGGTCCACTGAGGCCCGGCGTTGAGACTGTCGAGGGCACTGTGAAGTCTGTTGTCGGTCCTTTGTACAATAAGTTCCACGGCGTTCCGATTGAGGTTCTTAAGTTCGTCGATCGCAAGGTTGACGAGTCGGTGACCAAGATCGATCGGCATGTACCGCCAACCATCAAGCAAGCCTCATCGCAGGCCATGTCCGCCGCACAGCAAGCGCCTGAAATTGCCCGAAATGTAGCCTTGGAGGTCAGACACACTGGCCTTAAAGACTCTGTCTCTGGCATTGTGAAATCTGTGTATGCCAAGTACGAGCCAACTGCTAAGCAACTCTACTCCAAATACGAGCCGAAGGCCGAGCAATGCGCAGCTTCGGCATGGCACAGACTCAACCAGCTCCCTGTTTTCCCCACTGTCGCACAAGCCATCTTGCCAACTGCAGTGTACTGCACCGAGAAATACAACGAGACCGTGCAAAGCACCTCCAAGAAGGGCTACAAGGTCTCTTCGTACCTCCCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGGACAGAATTGAGATGGAGCCCTTGGTGAACTGAGAGCCCTTGGATTTCCTGGTTTCGAAATAACACATCATGAATGTTTTTGTTGAACGGAGGCACACTTACATGTTGGTGTTGTCATCCTCTCTGAGCCTTGTGTTGTTTTGGCTTCAGATATAGCTATGGCTTTTATGTTTCTTCTTTGGTAAGAGATATTAGTTACACAGGTTTGATATTATATTTGAAGGCTTAATTAATTCCTAGTCTTTGTTTGAGATTTACTTTCTTCCTGCGTATAACATTAGATGGAAAAAATATTTTAATATTTTTCCTAAGGTGAGAAAGCTTCTCCCAAAAGACCGTTTTAAATTCATGAGGCTAATAGCCATATGTGACAGACCAGAATGGATAATATCGACTGGCGGTAGACTTTAGCTGTAGAGTCGACTCTTTATACAAATTTTTAGTGCAGAAGTTTTCGTCCATTTCGCTAACTCGTTCCATTTGTCATTGATATTTTTTTGTCTAAATTCATGCACTTGATATTTTCACGAAAGGATAATGTTTAGAAATTTTGTAGTAATACCTGGACAGTATCGCAAACCAAATAACACAATCATACTAACCAAACTAAGAAGAAAGTAGATGGTGATGACTTTCATGTGCAAACAAGATAGAAGGCAACACGTGAATGACGCCCATCGAATTACATTAAGGTCATGATAGATAAGTAT

Coding sequence (CDS)

ATGGCTGATTCCAATCCTTCGTCGCAGCACCATGAAATGGCGGCTAGGGCAGAGGAGGAGAGGCTGAAGTATTTGGAGTTTGTTCAAACGGCGGCGTTTCGAGCGACGGAGTGTTTCTTCAACGTTTATGGCTATGCGAAGAACCGGATTGGTCCACTGAGGCCCGGCGTTGAGACTGTCGAGGGCACTGTGAAGTCTGTTGTCGGTCCTTTGTACAATAAGTTCCACGGCGTTCCGATTGAGGTTCTTAAGTTCGTCGATCGCAAGGTTGACGAGTCGGTGACCAAGATCGATCGGCATGTACCGCCAACCATCAAGCAAGCCTCATCGCAGGCCATGTCCGCCGCACAGCAAGCGCCTGAAATTGCCCGAAATGTAGCCTTGGAGGTCAGACACACTGGCCTTAAAGACTCTGTCTCTGGCATTGTGAAATCTGTGTATGCCAAGTACGAGCCAACTGCTAAGCAACTCTACTCCAAATACGAGCCGAAGGCCGAGCAATGCGCAGCTTCGGCATGGCACAGACTCAACCAGCTCCCTGTTTTCCCCACTGTCGCACAAGCCATCTTGCCAACTGCAGTGTACTGCACCGAGAAATACAACGAGACCGTGCAAAGCACCTCCAAGAAGGGCTACAAGGTCTCTTCGTACCTCCCATTGGTCCCTACTGAGAGGATTGCCAAAGTGTTCAGCAAGGACAGAATTGAGATGGAGCCCTTGGTGAACTGA

Protein sequence

MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSQAMSAAQQAPEIARNVALEVRHTGLKDSVSGIVKSVYAKYEPTAKQLYSKYEPKAEQCAASAWHRLNQLPVFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPLVN

Homology

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BLAST of Carg25029-RA vs. NCBI nr
Match: XP_022933698.1 (REF/SRPP-like protein At3g05500 [Cucurbita moschata])

HSP 1 Score: 407.9 bits (1047), Expect = 2.4e-110
Identity = 234/242 (96.69%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV
Sbjct: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVD SVTKIDRHVPPTIKQASS   XXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDASVTKIDRHVPPTIKQASSQAMXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           X    VALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP
Sbjct: 121 XIARNVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL
Sbjct: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029-RA vs. NCBI nr
Match: XP_023530281.1 (REF/SRPP-like protein At3g05500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.1 bits (1045), Expect = 4.1e-110
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADSNPSSQH EMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV
Sbjct: 1   MADSNPSSQHQEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP
Sbjct: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL
Sbjct: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029-RA vs. NCBI nr
Match: XP_022969922.1 (REF/SRPP-like protein At3g05500 [Cucurbita maxima])

HSP 1 Score: 396.4 bits (1017), Expect = 7.2e-107
Identity = 234/242 (96.69%), Postives = 236/242 (97.52%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRA+ECFFN YGYAKNRIGPLRPGVETV
Sbjct: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRASECFFNAYGYAKNRIGPLRPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQA  XXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQAXXXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXX  +EVRHTGLKDSVSGIVKSVYAKYEP XXXXXXXXXXXXXXXXASAWHRLNQLP
Sbjct: 121 XXXXXXXMEVRHTGLKDSVSGIVKSVYAKYEPXXXXXXXXXXXXXXXXXASAWHRLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL
Sbjct: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

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BLAST of Carg25029-RA vs. NCBI nr
Match: XP_004135611.1 (PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus] >KGN66066.1 hypothetical protein Csa_1G569430 [Cucumis sativus])

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 196/242 (80.99%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADS+ SSQ  +M  RA++  LKYLEFVQTAAFRATECFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVV PLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPT+KQASS          
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EVR  GLKDSVSGIVKSVYAKYEP+XXXXXXXXXXXXXXXX  AWH+LNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSXXXXXXXXXXXXXXXXXXAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTA YCTEKYNETV++++KKGYKVSSYLPLVPTERIAKVFSK+ +EMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of Carg25029-RA vs. NCBI nr
Match: XP_022146027.1 (REF/SRPP-like protein At3g05500 [Momordica charantia])

HSP 1 Score: 337.0 bits (863), Expect = 5.2e-89
Identity = 203/242 (83.88%), Postives = 217/242 (89.67%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA+ +PS Q  EMAARAEEERLKYL FVQTAAF AT CFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MAEPDPSVQQLEMAARAEEERLKYLAFVQTAAFFATACFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPT      XXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXX     R +GLKDS+SGIVKSVYAKYEPTXXXXXXXXXXXXXX  A AWH+LNQLP
Sbjct: 121 XXXXXXXXXXRRSGLKDSLSGIVKSVYAKYEPTXXXXXXXXXXXXXXCAALAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFP VAQAILPTA YCTEKYNETV++T++KGYKVSSYLPLVPTERIAKVFSKDR+E+EPL
Sbjct: 181 VFPHVAQAILPTAAYCTEKYNETVRTTAEKGYKVSSYLPLVPTERIAKVFSKDRVEVEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 242

[Close]

BLAST of Carg25029-RA vs. TAIR10
Match: AT3G05500.1 (Rubber elongation factor protein (REF))

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-61
Identity = 131/240 (54.58%), Postives = 175/240 (72.92%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA     +Q      + E+ERLKYL+FVQ AA  A   F  +Y  AK++ GPL+PGVE+V
Sbjct: 1   MATQTDLAQPKLDMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EG VK+VVGP+Y K+H VP+EVLK++D+KVD SVT++DR VPP +KQ S+          
Sbjct: 61  EGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                +A EVR  G+ ++ SG+ KSVY+KYE  XXXXXXXXXXXXXXXX  AW +LNQLP
Sbjct: 121 IVARALASEVRRAGVVETASGMAKSVYSKYEXXXXXXXXXXXXXXXXXXXXAWKKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           +FP +AQ  +PTA +C+EKYN+TV   ++KGY+V+SY+PLVPTERI+K+F++++ E EPL
Sbjct: 181 LFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of Carg25029-RA vs. TAIR10
Match: AT2G47780.1 (Rubber elongation factor protein (REF))

HSP 1 Score: 167.5 bits (423), Expect = 9.8e-42
Identity = 87/214 (40.65%), Postives = 124/214 (57.94%), Query Frame = 0


Query: 21  RLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHGVPI 80
           +LK+LEF+Q AA     CF  +Y  AK+  GPL+ GVE +E  V++V+ PLY KFH VP 
Sbjct: 40  KLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPF 99

Query: 81  EVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKDSVS 140
           ++L FVDRKVD+    ++ +VP  +KQASS               VA EV+ TG+ D+  
Sbjct: 100 KLLLFVDRKVDDVFFDVETYVPSLVKQASS-----------QALTVATEVQRTGVVDTTK 159

Query: 141 GIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCTEKY 200
            I +SV  KYEP                 A+ W  LNQLP+FP VA  ++PTA Y +EKY
Sbjct: 160 SIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKY 219

Query: 201 NETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDR 235
           N+ V+    + Y  + YLP++P E+I+ +  +D+
Sbjct: 220 NDAVRYVGDRDYFGAEYLPMIPIEKISDILEQDQ 231

[Close]

BLAST of Carg25029-RA vs. TAIR10
Match: AT1G67360.2 (Rubber elongation factor protein (REF))

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 69/217 (31.80%), Postives = 99/217 (45.62%), Query Frame = 0


Query: 17  AEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFH 76
           ++E  LK+L FV+ A         N+Y YAK   GPL+  VE VEG V +VV P+Y KF 
Sbjct: 8   SKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFK 67

Query: 77  GVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLK 136
            VP  +L F+D KV E   K D H PP  K+  +                A E   + +K
Sbjct: 68  DVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYK--------ATEKAQSFVK 127

Query: 137 DSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYC 196
           ++ +G  K+ +  Y  T                   W +LNQ      +    LP A + 
Sbjct: 128 EARTGGPKAAF-NYAAT------EYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHF 187

Query: 197 TEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKD 234
           + +YN+ V   +  GY +  YLPLVP + I K + K+
Sbjct: 188 SSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEKE 209

[Close]

BLAST of Carg25029-RA vs. Swiss-Prot
Match: sp|Q9MA63|Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-60
Identity = 131/240 (54.58%), Postives = 175/240 (72.92%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA     +Q      + E+ERLKYL+FVQ AA  A   F  +Y  AK++ GPL+PGVE+V
Sbjct: 1   MATQTDLAQPKLDMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EG VK+VVGP+Y K+H VP+EVLK++D+KVD SVT++DR VPP +KQ S+          
Sbjct: 61  EGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                +A EVR  G+ ++ SG+ KSVY+KYE  XXXXXXXXXXXXXXXX  AW +LNQLP
Sbjct: 121 IVARALASEVRRAGVVETASGMAKSVYSKYEXXXXXXXXXXXXXXXXXXXXAWKKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           +FP +AQ  +PTA +C+EKYN+TV   ++KGY+V+SY+PLVPTERI+K+F++++ E EPL
Sbjct: 181 LFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240

[Close]

BLAST of Carg25029-RA vs. Swiss-Prot
Match: sp|Q9SW70|SRP_VITRI (Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-56
Identity = 122/230 (53.04%), Postives = 158/230 (68.70%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA+S    Q        EE+RLKYL+FVQ AA     CF ++Y YAK   GPL+PGV+TV
Sbjct: 1   MAESEAKQQPE--TVHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVK+V+GP+Y KF+ VP E+L FVDRKV+ S+ +++RHVP  +K+AS           
Sbjct: 61  EGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EV+  G+ D+   I K+VY+K EPT XXXXXXXXXXX     SAW  LN+LP
Sbjct: 121 ELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAXXXXXXXXXXXEQYAVSAWRSLNRLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVF 231
           +FP VAQ ++PTA Y +EKYN++V  T+++GY V+ YLPL+PTERIAKVF
Sbjct: 181 LFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVF 228

[Close]

BLAST of Carg25029-RA vs. Swiss-Prot
Match: sp|A2Y0H2|Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017815 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 103/219 (47.03%), Postives = 136/219 (62.10%), Query Frame = 0


Query: 12  EMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPL 71
           EM A AEEERL+YLEFVQ AA +        Y YAK   GPLRPGV+ VEGTVK+VVGP+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLXXXXYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP +K+A                  A EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPG-----------LARSAAAEVR 144

Query: 132 HTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILP 191
             GL  + +G+ KS  A+ EP                 A AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVF 231
            A   + +YN  V   +K+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

[Close]

BLAST of Carg25029-RA vs. Swiss-Prot
Match: sp|Q9FRA7|Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 103/219 (47.03%), Postives = 136/219 (62.10%), Query Frame = 0


Query: 12  EMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPL 71
           EM A AEEERL+YLEFVQ AA +        Y YAK   GPLRPGV+ VEGTVK+VVGP+
Sbjct: 25  EMEAAAEEERLRYLEFVQQAAAQVLVLXXXXYAYAKQGAGPLRPGVDHVEGTVKAVVGPV 84

Query: 72  YNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVR 131
           Y++FHGVP+++LKF+DRKV ESV ++DR VPP +K+A                  A EVR
Sbjct: 85  YDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPG-----------LARSAAAEVR 144

Query: 132 HTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILP 191
             GL  + +G+ KS  A+ EP                 A AW  LN+LP+ P+V +A+LP
Sbjct: 145 QAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLP 204

Query: 192 TAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVF 231
            A   + +YN  V   +K+G  V++YLPLVPTER+++VF
Sbjct: 205 AAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232

[Close]

BLAST of Carg25029-RA vs. Swiss-Prot
Match: sp|Q41112|SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris OX=3885 GN=SRP PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-46
Identity = 99/190 (52.11%), Postives = 124/190 (65.26%), Query Frame = 0


Query: 42  VYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHV 101
           +Y YAK R GPL+PGV TVE  VK+VV P+Y++FH VP+E+LK+ DRKV E    +DRHV
Sbjct: 6   LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHV 65

Query: 102 PPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXX 161
           P  +K+ SS               V  EVR    +D VS   K+VY+KYEPT        
Sbjct: 66  PSNVKKVSS-----------QARSVVSEVR----RDGVSTFAKTVYSKYEPT-------- 125

Query: 162 XXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLV 221
                    SAW +LNQLP+FP VA A+LP A YCTEKYNE + S+++KGY+VS+YLPLV
Sbjct: 126 ---AEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLV 165

Query: 222 PTERIAKVFS 232
           PTE+IAKVFS
Sbjct: 186 PTEKIAKVFS 165

[Close]

BLAST of Carg25029-RA vs. TrEMBL
Match: tr|A0A0A0M1J0|A0A0A0M1J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569430 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 7.9e-94
Identity = 196/242 (80.99%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADS+ SSQ  +M  RA++  LKYLEFVQTAAFRATECFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MADSDLSSQRQDMPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVV PLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPT+KQASS          
Sbjct: 61  EGTVKSVVAPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EVR  GLKDSVSGIVKSVYAKYEP+XXXXXXXXXXXXXXXX  AWH+LNQLP
Sbjct: 121 EVARSVASEVRRAGLKDSVSGIVKSVYAKYEPSXXXXXXXXXXXXXXXXXXAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTA YCTEKYNETV++++KKGYKVSSYLPLVPTERIAKVFSK+ +EMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of Carg25029-RA vs. TrEMBL
Match: tr|A0A1S3BP12|A0A1S3BP12_CUCME (REF/SRPP-like protein At3g05500 OS=Cucumis melo OX=3656 GN=LOC103492163 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 6.2e-83
Identity = 196/242 (80.99%), Postives = 211/242 (87.19%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MADS+ SSQ  +MA RA+E+RLKYLEFVQTAAFRATECFFNVYGYAK+R GPL+PGVETV
Sbjct: 1   MADSDHSSQRQDMAVRADEDRLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGPL NKFHGVPIEVLKFVDRKVDESVTK              XXXXXXXXXX
Sbjct: 61  EGTVKSVVGPLCNKFHGVPIEVLKFVDRKVDESVTKXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
           XXXXX       +GLKDSVSGIVKSVYAKYEP+XXXXXXXXXXXXXXXX  AWH+LNQLP
Sbjct: 121 XXXXXXXXXXXRSGLKDSVSGIVKSVYAKYEPSXXXXXXXXXXXXXXXXXXAWHKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           VFPTVAQAILPTA YCTEKYNETV++++KKGYKVSSYLPLVPTERIAKVFSK+ +EMEPL
Sbjct: 181 VFPTVAQAILPTAAYCTEKYNETVRTSAKKGYKVSSYLPLVPTERIAKVFSKNGVEMEPL 240

Query: 241 VN 243
           VN
Sbjct: 241 VN 242

[Close]

BLAST of Carg25029-RA vs. TrEMBL
Match: tr|A0A218VRE9|A0A218VRE9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020220 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.3e-71
Identity = 152/224 (67.86%), Postives = 178/224 (79.46%), Query Frame = 0


Query: 18  EEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHG 77
           EEERLKYLEFVQ AA  A  CF N+YGYAK++ GPL+PGVETVEGTVK+VVGP+Y+KFH 
Sbjct: 13  EEERLKYLEFVQVAAVHAALCFLNLYGYAKDKSGPLKPGVETVEGTVKTVVGPVYDKFHD 72

Query: 78  VPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKD 137
           VPIEVLKFVDRK+DESVTK+D+ VPP +KQASS               +A EV+  G+ D
Sbjct: 73  VPIEVLKFVDRKIDESVTKLDKQVPPVVKQASSQAFSAAQRAPVAAQTMASEVKRAGVVD 132

Query: 138 SVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCT 197
           + SGI KSVY KYE  XXXXXXXXXXXXXXX AS W +LN+LP+FP VAQ  +PTA YC+
Sbjct: 133 TASGIAKSVYTKYEXXXXXXXXXXXXXXXXXAASTWRKLNRLPLFPQVAQVFVPTAAYCS 192

Query: 198 EKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPLV 242
           EKYNETV+S+++KGYKVS+YLPLVPTE+IAKVF  D  E EPLV
Sbjct: 193 EKYNETVRSSAEKGYKVSTYLPLVPTEKIAKVFRDDVPEAEPLV 236

[Close]

BLAST of Carg25029-RA vs. TrEMBL
Match: tr|A0A2I0J5K9|A0A2I0J5K9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028064 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.3e-71
Identity = 152/224 (67.86%), Postives = 178/224 (79.46%), Query Frame = 0


Query: 18  EEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETVEGTVKSVVGPLYNKFHG 77
           EEERLKYLEFVQ AA  A  CF N+YGYAK++ GPL+PGVETVEGTVK+VVGP+Y+KFH 
Sbjct: 7   EEERLKYLEFVQVAAVHAALCFLNLYGYAKDKSGPLKPGVETVEGTVKTVVGPVYDKFHD 66

Query: 78  VPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXXXXXXXVALEVRHTGLKD 137
           VPIEVLKFVDRK+DESVTK+D+ VPP +KQASS               +A EV+  G+ D
Sbjct: 67  VPIEVLKFVDRKIDESVTKLDKQVPPVVKQASSQAFSAAQRAPVAAQTMASEVKRAGVVD 126

Query: 138 SVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLPVFPTVAQAILPTAVYCT 197
           + SGI KSVY KYE  XXXXXXXXXXXXXXX AS W +LN+LP+FP VAQ  +PTA YC+
Sbjct: 127 TASGIAKSVYTKYEXXXXXXXXXXXXXXXXXAASTWRKLNRLPLFPQVAQVFVPTAAYCS 186

Query: 198 EKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPLV 242
           EKYNETV+S+++KGYKVS+YLPLVPTE+IAKVF  D  E EPLV
Sbjct: 187 EKYNETVRSSAEKGYKVSTYLPLVPTEKIAKVFRDDVPEAEPLV 230

[Close]

BLAST of Carg25029-RA vs. TrEMBL
Match: tr|A0A2I4H1M9|A0A2I4H1M9_9ROSI (REF/SRPP-like protein At3g05500 OS=Juglans regia OX=51240 GN=LOC109012714 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.9e-69
Identity = 154/242 (63.64%), Postives = 179/242 (73.97%), Query Frame = 0


Query: 1   MADSNPSSQHHEMAARAEEERLKYLEFVQTAAFRATECFFNVYGYAKNRIGPLRPGVETV 60
           MA+ +  SQ   M    E+ RLKYLEFVQ A   A  CF N+Y YAK + GPL+PGVETV
Sbjct: 1   MAEGDLRSQ-DGMTREEEQMRLKYLEFVQVATIHAAVCFSNLYCYAKGKSGPLKPGVETV 60

Query: 61  EGTVKSVVGPLYNKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTIKQASSXXXXXXXXXX 120
           EGTVKSVVGP+Y+KFH VP+EVLK+VDRKVD SVT++DR VPP IKQASS          
Sbjct: 61  EGTVKSVVGPVYDKFHDVPVEVLKYVDRKVDASVTELDRRVPPIIKQASSQAFSAAQSAP 120

Query: 121 XXXXXVALEVRHTGLKDSVSGIVKSVYAKYEPTXXXXXXXXXXXXXXXXASAWHRLNQLP 180
                VA EV+  G+ D+ SGI KSVY K EP XXXXXXXXXXXXX    SAW +LNQLP
Sbjct: 121 VVARAVASEVKRAGVVDTASGIAKSVYTKCEPXXXXXXXXXXXXXXQCAVSAWRKLNQLP 180

Query: 181 VFPTVAQAILPTAVYCTEKYNETVQSTSKKGYKVSSYLPLVPTERIAKVFSKDRIEMEPL 240
           +FP VAQ ++PTA YCTEKYN+TV+ T++KGYKVSSYLPLVPTE+IAKVF  D  E EPL
Sbjct: 181 LFPQVAQVVVPTAAYCTEKYNQTVRDTAEKGYKVSSYLPLVPTEKIAKVFRGDGSESEPL 240

Query: 241 VN 243
           V+
Sbjct: 241 VS 241

The following BLAST results are available for this feature:

BLAST of Carg25029-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933698.1	2.4e-110	96.69	REF/SRPP-like protein At3g05500 [Cucurbita moschata]	[more]
XP_023530281.1	4.1e-110	99.59	REF/SRPP-like protein At3g05500 [Cucurbita pepo subsp. pepo]	[more]
XP_022969922.1	7.2e-107	96.69	REF/SRPP-like protein At3g05500 [Cucurbita maxima]	[more]
XP_004135611.1	1.2e-93	80.99	PREDICTED: REF/SRPP-like protein At3g05500 [Cucumis sativus] >KGN66066.1 hypothe...	[more]
XP_022146027.1	5.2e-89	83.88	REF/SRPP-like protein At3g05500 [Momordica charantia]	[more]

BLAST of Carg25029-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05500.1	1.9e-61	54.58	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	9.8e-42	40.65	Rubber elongation factor protein (REF)	[more]
AT1G67360.2	1.4e-24	31.80	Rubber elongation factor protein (REF)	[more]

BLAST of Carg25029-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MA63\|Y3550_ARATH	3.4e-60	54.58	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=...	[more]
sp\|Q9SW70\|SRP_VITRI	5.1e-56	53.04	Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1	[more]
sp\|A2Y0H2\|Y5513_ORYSI	2.1e-49	47.03	REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_0...	[more]
sp\|Q9FRA7\|Y5513_ORYSJ	2.1e-49	47.03	REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic...	[more]
sp\|Q41112\|SRP_PHAVU	3.7e-46	52.11	Stress-related protein OS=Phaseolus vulgaris OX=3885 GN=SRP PE=2 SV=1	[more]

BLAST of Carg25029-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M1J0\|A0A0A0M1J0_CUCSA	7.9e-94	80.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569430 PE=4 SV=1	[more]
tr\|A0A1S3BP12\|A0A1S3BP12_CUCME	6.2e-83	80.99	REF/SRPP-like protein At3g05500 OS=Cucumis melo OX=3656 GN=LOC103492163 PE=4 SV=...	[more]
tr\|A0A218VRE9\|A0A218VRE9_PUNGR	9.3e-71	67.86	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020220 PE=4 SV=1	[more]
tr\|A0A2I0J5K9\|A0A2I0J5K9_PUNGR	9.3e-71	67.86	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028064 PE=4 SV=1	[more]
tr\|A0A2I4H1M9\|A0A2I4H1M9_9ROSI	3.9e-69	63.64	REF/SRPP-like protein At3g05500 OS=Juglans regia OX=51240 GN=LOC109012714 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008802	REF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25029	Carg25029	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25029-RA	Carg25029-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25029-RA.three_prime_UTR.1	Carg25029-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25029-RA.CDS.3	Carg25029-RA.CDS.3	CDS
Carg25029-RA.CDS.2	Carg25029-RA.CDS.2	CDS
Carg25029-RA.CDS.1	Carg25029-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25029-RA.five_prime_UTR.1	Carg25029-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25029-RA.exon.3	Carg25029-RA.exon.3	exon
Carg25029-RA.exon.2	Carg25029-RA.exon.2	exon
Carg25029-RA.exon.1	Carg25029-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 17..231 e-value: 5.7E-89 score: 297.3
IPR008802	Rubber elongation factor	PANTHER	PTHR33732	FAMILY NOT NAMED	coord: 1..240
None	No IPR available	PANTHER	PTHR33732:SF3	SUBFAMILY NOT NAMED	coord: 1..240