Carg20453 (gene) Silver-seed gourd

Overview
NameCarg20453
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L17
LocationCucurbita_argyrosperma_scaffold_172 : 52928 .. 54780 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGTGGAGTTTTGTCCTTCTCTGCCTATAAACCTAATTCAAGCACTTCTTCTTCTACCTCAGTCACCGCGTAATTCAACTGTTTTTCAGAAGCCGAAGTTGCAGACGTCGCTATGGTTCGTCTTTTATCCTCTTGTTTTATTCTTCATAACAATGTCATGTGAGGTTTATGTGTACGATAATCTTGAATTCCTCTTTATGTTCATTGTTGCAGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATGTATGTTTCTTGTGGATTTCGATCGATTTCTGTTTGAAGCTCTGCATTTCTTTTGTTTATCTTCTATCGGCTTGAATTTTATGGCTTCATTGAGATTTTTGCCTTGAACTGACACTTCGTTCTTTCTCTTTTCAGCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGGTAGGTTTAATTCCTCACCATTTCGAGCTTTGATATTTTCTTAGTTTCCATGAACTGTTTTCTACTTCTTTCCGATGTACAAAATATTTGATTCAGGGCCATATTTCCTTTCCGGTGCAAGTAATGGATTGGATAAGTGATAATATATGTGAGCTTTCGCCTTTTCCAGACCTGAAAAGAAGTGCTGAATCCTTATGTTTTTTGCCACTCGCATTAACCCGACATCGTCTAGCTTTCCATGATTACTTCTGTGTAACCTGATGATAAAAGCAGGGCTTCTGTTGCCTTCTATGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAACCCATAGTGTCTGAAGGTTCAGTAAATGATGCGACATATTTTAGCTTGTAGCTTTACTTGCATATTTCAGTGCATCATGTTGATCAAACTAACGACATTAACATGTTAATCTTTATATTGTAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTATGTAATAATTCCTGTTTAGTTTCACTCTAAACTGTTGCTCATAAGTTCAGTTTTTTCACTGTTGCTTATAAGTATTATGTTCTTTCAGGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCGTATGTTCTGAATACAGTTTACTTATTTTTTCTCTGGATGTCTGCTTAATAAACATCCTGCCTGACATTTCCTTTCCCTTTGTTTTCCTTTTGATTGGCAGCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGGTAACCAATTAGATTGCCTAATTTACATTTGTGCTGTGAAGGAAATAGATAGATTGCTTTCTTATTGTTCATGATTCTACAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGAATCAGAAGTACAAATTTTGATCTGGGTTTTACAGTGCCATTTTTGTTTTGAAGTGAGTTTAATTATAAGTCACTATATAGGAGGTATTATGATTTAGATGTTTTGTGTGACATGTTATACTCGGGTTCCTTTCCAGTTCAATGTTGTGCTATCATCTATTATCTATAGTCATAGTGGAATTATTATTTGCAATTTTCATAAT

mRNA sequence

GTTTTGTGGAGTTTTGTCCTTCTCTGCCTATAAACCTAATTCAAGCACTTCTTCTTCTACCTCAGTCACCGCGTAATTCAACTGTTTTTCAGAAGCCGAAGTTGCAGACGTCGCTATGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGAATCAGAAGTACAAATTTTGATCTGGGTTTTACAGTGCCATTTTTGTTTTGAAGTGAGTTTAATTATAAGTCACTATATAGGAGGTATTATGATTTAGATGTTTTGTGTGACATGTTATACTCGGGTTCCTTTCCAGTTCAATGTTGTGCTATCATCTATTATCTATAGTCATAGTGGAATTATTATTTGCAATTTTCATAAT

Coding sequence (CDS)

ATGGTTAAGTACTCGAGGGAACCCGACAATCCCACCAAATCCTGCAAAGCCAGAGGTTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCCCATGCCATCAGGAAGTTGCCGCTGGTCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAGCAGGCCATTCCTTTTCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCCCAGGCAAAGAACAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTGTGAATGCCGAGAGTAACGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAAGTAAACCAAGCTCAGAAGCAAAGGCGTCGAACCTACCGCGCTCATGGAAGAATCAACCCATACATGTCTTCTCCTTGCCATATTGAGTTGATTTTGTCTGAGAAAGAAGAGCCTGTTAAGAAGGAGCCTGAGACTCAGCTGGCTACAGGCAAATCGAAGAAAGGTCGAGCGATCCGAAGCGGTGCTTCTTCTTGA

Protein sequence

MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSGASS
Homology
[Close]
BLAST of Carg20453 vs. NCBI nr
Match: XP_022951813.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 2.3e-97
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.2 bits (918), Expect = 1.6e-95
Identity = 179/183 (97.81%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. NCBI nr
Match: XP_004144196.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata])

HSP 1 Score: 356.7 bits (914), Expect = 4.8e-95
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. NCBI nr
Match: XP_008445497.1 (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 4.0e-94
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. NCBI nr
Match: XP_022997268.1 (60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 6.9e-94
Identity = 176/183 (96.17%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQLATGK KKG+A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. TAIR10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 313.9 bits (803), Expect = 6.4e-86
Identity = 157/176 (89.20%), Postives = 164/176 (93.18%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of Carg20453 vs. TAIR10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 311.2 bits (796), Expect = 4.2e-85
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]
BLAST of Carg20453 vs. Swiss-Prot
Match: sp|P51413|RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 313.9 bits (803), Expect = 1.2e-84
Identity = 157/176 (89.20%), Postives = 164/176 (93.18%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of Carg20453 vs. Swiss-Prot
Match: sp|Q93VI3|RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.5e-84
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]
BLAST of Carg20453 vs. Swiss-Prot
Match: sp|O48557|RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLL NAESNA+VKGLDVD L+VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]
BLAST of Carg20453 vs. Swiss-Prot
Match: sp|P35266|RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.8e-77
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLL NAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]
BLAST of Carg20453 vs. Swiss-Prot
Match: sp|P35267|RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.4e-76
Identity = 140/171 (81.87%), Postives = 153/171 (89.47%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLL NAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]
BLAST of Carg20453 vs. TrEMBL
Match: tr|A0A1S3BCV8|A0A1S3BCV8_CUCME (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. TrEMBL
Match: tr|A0A1S3BDN4|A0A1S3BDN4_CUCME (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.3e-92
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVD L VSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT KSKK +A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. TrEMBL
Match: tr|A0A0A0KPZ4|A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.3e-92
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVD L VSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT KSKK +A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. TrEMBL
Match: tr|A0A2I4FYK2|A0A2I4FYK2_9ROSI (60S ribosomal protein L17-2 OS=Juglans regia OX=51240 GN=LOC109003161 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.0e-90
Identity = 172/183 (93.99%), Postives = 175/183 (95.63%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLGKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLFVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT KSKK +A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Carg20453 vs. TrEMBL
Match: tr|A0A2P2KHB7|A0A2P2KHB7_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 169/183 (92.35%), Postives = 176/183 (96.17%), Query Frame = 0 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAH+IRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHSIRKLPLAKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVD L +SHIQV
Sbjct: 61  RRYCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE V+KEPETQLATGKSKK +A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEESVQKEPETQLATGKSKKSQALRSG 180

Query: 181 ASS 184
            SS
Sbjct: 181 TSS 183

The following BLAST results are available for this feature:
BLAST of Carg20453 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951813.12.3e-97100.0060S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S riboso... [more]
XP_023545223.11.6e-9597.8160S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo][more]
XP_004144196.14.8e-9597.27PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S rib... [more]
XP_008445497.14.0e-9497.27PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo][more]
XP_022997268.16.9e-9496.1760S ribosomal protein L17-2-like [Cucurbita maxima][more]
BLAST of Carg20453 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67430.16.4e-8689.20Ribosomal protein L22p/L17e family protein[more]
AT1G27400.14.2e-8589.66Ribosomal protein L22p/L17e family protein[more]
BLAST of Carg20453 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P51413|RL172_ARATH1.2e-8489.2060S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2[more]
sp|Q93VI3|RL171_ARATH7.5e-8489.6660S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1[more]
sp|O48557|RL17_MAIZE1.1e-7986.4760S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1[more]
sp|P35266|RL171_HORVU6.8e-7784.4360S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
sp|P35267|RL172_HORVU4.4e-7681.8760S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
BLAST of Carg20453 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BCV8|A0A1S3BCV8_CUCME2.7e-9497.2760S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV... [more]
tr|A0A1S3BDN4|A0A1S3BDN4_CUCME4.3e-9295.0860S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1[more]
tr|A0A0A0KPZ4|A0A0A0KPZ4_CUCSA4.3e-9295.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1[more]
tr|A0A2I4FYK2|A0A2I4FYK2_9ROSI1.0e-9093.9960S ribosomal protein L17-2 OS=Juglans regia OX=51240 GN=LOC109003161 PE=3 SV=1[more]
tr|A0A2P2KHB7|A0A2P2KHB7_RHIMU1.8e-9092.35Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018260Ribosomal_L22/L17_CS
IPR001063Ribosomal_L22
IPR005721Ribosomal_L22/L17_euk/arc
IPR036394Ribosomal_L22/L17_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20453-RACarg20453-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036394Ribosomal protein L22/L17 superfamilyGENE3DG3DSA:3.90.470.10coord: 1..182
e-value: 1.5E-77
score: 261.4
IPR036394Ribosomal protein L22/L17 superfamilySUPERFAMILYSSF54843Ribosomal protein L22coord: 1..154
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMTIGR01038TIGR01038coord: 4..154
e-value: 4.6E-60
score: 199.8
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealPANTHERPTHR1159360S RIBOSOMAL PROTEIN L17coord: 1..170
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 17..151
e-value: 9.4E-40
score: 135.0
IPR001063Ribosomal protein L22/L17CDDcd00336Ribosomal_L22coord: 15..151
e-value: 6.83829E-34
score: 116.821
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..183
NoneNo IPR availablePANTHERPTHR11593:SF17SUBFAMILY NOT NAMEDcoord: 1..170
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 127..151

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20453Csa5G589950Cucumber (Chinese Long) v2carcuB0648
Carg20453Csa6G365170Cucumber (Chinese Long) v2carcuB0649
Carg20453MELO3C011873Melon (DHL92) v3.5.1carmeB0623
Carg20453MELO3C011453Melon (DHL92) v3.5.1carmeB0625
Carg20453CSPI06G19350Wild cucumber (PI 183967)carcpiB0659
Carg20453CSPI05G21490Wild cucumber (PI 183967)carcpiB0657
Carg20453Cucsa.075630Cucumber (Gy14) v1carcgyB0697
Carg20453Cucsa.056280Cucumber (Gy14) v1carcgyB0696
Carg20453CmaCh18G007040Cucurbita maxima (Rimu)carcmaB0882
Carg20453CmaCh04G018300Cucurbita maxima (Rimu)carcmaB0884
Carg20453CmoCh05G004480Cucurbita moschata (Rifu)carcmoB0859
Carg20453CmoCh04G019260Cucurbita moschata (Rifu)carcmoB0858
Carg20453CmoCh18G006930Cucurbita moschata (Rifu)carcmoB0856
Carg20453Lsi04G006740Bottle gourd (USVL1VR-Ls)carlsiB567
Carg20453Lsi08G008690Bottle gourd (USVL1VR-Ls)carlsiB569
Carg20453Cp4.1LG07g00710Cucurbita pepo (Zucchini)carcpeB0889
Carg20453Cp4.1LG01g16230Cucurbita pepo (Zucchini)carcpeB0888
Carg20453Cp4.1LG09g05950Cucurbita pepo (Zucchini)carcpeB0886
Carg20453CsGy5G021010Cucumber (Gy14) v2carcgybB0623
Carg20453CsGy6G018820Cucumber (Gy14) v2carcgybB0625
Carg20453MELO3C011453.2Melon (DHL92) v3.6.1carmedB0633
Carg20453MELO3C011873.2Melon (DHL92) v3.6.1carmedB0630
Carg20453CsaV3_6G032270Cucumber (Chinese Long) v3carcucB0660
Carg20453CsaV3_5G030340Cucumber (Chinese Long) v3carcucB0658
Carg20453Cla97C08G152940Watermelon (97103) v2carwmbB0651
Carg20453Bhi07G001522Wax gourdcarwgoB0744
Carg20453Bhi04G001155Wax gourdcarwgoB0742
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20453Carg09289Silver-seed gourdcarcarB162
Carg20453Carg14260Silver-seed gourdcarcarB284
Carg20453Carg21233Silver-seed gourdcarcarB551
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20453Silver-seed gourdcarcarB222
Carg20453Cucumber (Gy14) v2carcgybB0622
Carg20453Cucumber (Gy14) v1carcgyB0700
Carg20453Cucurbita maxima (Rimu)carcmaB0881
Carg20453Cucurbita maxima (Rimu)carcmaB0885
Carg20453Cucurbita moschata (Rifu)carcmoB0855
Carg20453Cucurbita moschata (Rifu)carcmoB0860
Carg20453Cucurbita pepo (Zucchini)carcpeB0887
Carg20453Wild cucumber (PI 183967)carcpiB0656
Carg20453Cucumber (Chinese Long) v2carcuB0647
Carg20453Cucumber (Chinese Long) v3carcucB0657
Carg20453Bottle gourd (USVL1VR-Ls)carlsiB568
Carg20453Melon (DHL92) v3.5.1carmeB0624
Carg20453Melon (DHL92) v3.6.1carmedB0632
Carg20453Watermelon (Charleston Gray)carwcgB0605
Carg20453Watermelon (Charleston Gray)carwcgB0606
Carg20453Watermelon (97103) v1carwmB0621
Carg20453Watermelon (97103) v1carwmB0622
Carg20453Watermelon (97103) v2carwmbB0650
Carg20453Wax gourdcarwgoB0740