Cp4.1LG09g05950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g05950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L17
LocationCp4.1LG09 : 4034120 .. 4037129 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAGTGGGCCGTGTAAGCCTGGCCCAATATAAAGTCCATGTTCAACGGTTCACGATTAGGGTTTCTCTACTATAAGAAACTCGAATTTCGTCTTCCTAGTACTCTTGCTTGCAGGAGGACTCAATCTGGTTCAGAGAGGTGAAGATTTAGCATCCGCCGCCATGGTACATTTCCTCTTGCAGCGTTCCGATCTCCTTTTTCACTTCTTATTATCTGTACAATGCTTGAAATTCCACGAGCTTAGCAAGTTTCTGAATTCAGATTTATGTTAATGTTCCCTTTTACAGGTTAAGTACTCGAGGGAGCCGGATAACATCACCAAGTGTAAGTTTGTTCTTCTTAATTTGTATTTTTTTTTTTCGTTTCATATTGATTTTCGTTATGCAGTTGTTGTGATTTGCACTATTTCTGAAGTTCTGTTAGAAACTTAGAAGTTCAGAATCTAATGCTTTTCGTTTGTAATTTATATTCAGCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGGTAACTTAGCTGCTTTAACTTCTTTCTCATTTCATTGTTCTTCTTCGTTGGATGAAATCCCGCCAATTCTGTGCAAATATGTAGATTTTTAATACAAGTATTCATTTATAGTTGTTAATGTTTTGGATTAAGAGTAATGTCATCTACATATTTGATGCCGTGAATGTGATTATTTTATGACTGTCTGATATTAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTTGTAAACTTCAGGAAAATCGAATTGGATCATTATTGGGTGAACCTCTGTATAAATAATTGCTAAAGGTTCAGTAAATGATGCTACATAATCTTTGCTGCTTGCTGTCATGGTTGATAGTTTTTGGATTGTGCGTACAAGAGTTTTAATTTTGCACTATCTGACTTTATGTTGTGCATTTGATAATTATCTGGGGCTGATTGTAAGTTTGTAACCAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGAATCGTTATTGGGTGAACCTCTGTTTTTCTAATTGCTGAAGGTTCAGTAAATGATGCTACATAAGCCTTATAGTATTTACTGTCTGTTGTAAGTTTATATCGATGATGGTACTTGGGACCTAAAATTTTATTGCTGATAGGCCTTTTTTTGTTTGACTCGAACAACAACACGGGTTAAATGTTAGTAAACTGTTTTTGATGACCATTTATTAAAATAATTTTATATTATACATACTAGATATTATGTAGAAATTGGAAAAAATTTACTACGTTTATGTAAGATTTTCTGAAATTGGACTTGTCTTGTAACCTGATGAAAAAAGCAGGGCTTTGTTGCCTCTGTGAACTGGGCTCTCGTAAACTTCAGGGAAACTAAGTGCATGGTTATTGGGTGAACCTCTGTAGTAATTATCACTGAAGGTTCAGTAAATTGTGCTACAATTTTACTATATCATAGTGTTCAAAAAGGTTGTATACATAAAATTTGAGAAAATAAGTTGATATACATTGAAGAAGTGATCCTAGATAGACATTTTTATGTGGGGCATCACCATTTTGCTAAGAATTATCTTGATAAATGTACCTGTTCAAAAAGCAGGGCTCTGTTGCCTTTTGTGAATGGTGGCTCTCGTCAAATTCAGGGAAACTGAATGCATTGTTATTGGGTGAACCTCTGTAAAGCTAGTTGCTGAAGGTTCAGTAAATGATGCTACACAAATAATATAGCTTATCGACATAGAACATGGATCTAATTGTAACAATTAACATTCTCATAGTAGAATTTCATACTGTTTTATTATAATAAGGTGTGGCTGTTCTCATTCTTGTCATTGTGAATTGATTTAATTTTTTACAGCTTGTATAAACTTCTTGAATGCATCCTTTGTTACCTGGTTTTTAACTTATTGCATCCACCATCATTTTGTTTGTCTGTAGAATACTAGAGAGACTGCACACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTAGGACGAACTGCACAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGATGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTACGTATAACCTTCTCTCCTAGTTATGCCATCCCTGTTTTTGATAACGATTCTGACCGACTATGGTATCTTCTTAATTCAGGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGTACCTATCGTGCTCACGGAAGAATTAACCGTATGTTTTTTCCTTAAGATCTCAAAAAGAACAACACTAAATTGTTTCTGGGTTTGATCATTGCATAAACTATCTGGAACGTTTGGTGTCTATTTTTTCTTGTGCAGCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCCGAAAAGGAAGAACCTGTGAAGAAAGAGGTAAAATTTGTATTAGATTTGTATATATTATGGTGTTTAGGAAGGGTTGTTCATAAATGCTTGGTTTTGTGGTGGCAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCCAATATTATTGCCGCATTTTGTACTTCTTTTTTGGTTTTAAAGCAGAGTTTGGTTGCTTAAGTCAAATATTAGAACGAGTTGAGTTGTTCGGTATCCAATGCCTCTTAACTTTGTAGTTTATGGAATCCTCGATCAAGTTCATTTTGGATTTTTATTCCTTTTTATGCCAACAGTTCTACAAATCATTTCTTCTTTTTTACTCATCCATTTCTTTATCATCGACTCAGGTGACTTTGTTCGGGATTCTTTCACCGTAAAAATTTGATAATTAATGGCAAGGTAGTTG

mRNA sequence

GATAGTGGGCCGTGTAAGCCTGGCCCAATATAAAGTCCATGTTCAACGGTTCACGATTAGGGTTTCTCTACTATAAGAAACTCGAATTTCGTCTTCCTAGTACTCTTGCTTGCAGGAGGACTCAATCTGGTTCAGAGAGGTGAAGATTTAGCATCCGCCGCCATGGTTAAGTACTCGAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACTAGAGAGACTGCACACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTAGGACGAACTGCACAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGATGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGTACCTATCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCCGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCCAATATTATTGCCGCATTTTGTACTTCTTTTTTGGTTTTAAAGCAGAGTTTGGTTGCTTAAGTCAAATATTAGAACGAGTTGAGTTGTTCGGTATCCAATGCCTCTTAACTTTGTAGTTTATGGAATCCTCGATCAAGTTCATTTTGGATTTTTATTCCTTTTTATGCCAACAGTTCTACAAATCATTTCTTCTTTTTTACTCATCCATTTCTTTATCATCGACTCAGGTGACTTTGTTCGGGATTCTTTCACCGTAAAAATTTGATAATTAATGGCAAGGTAGTTG

Coding sequence (CDS)

ATGGTTAAGTACTCGAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACTAGAGAGACTGCACACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTAGGACGAACTGCACAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGATGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGTACCTATCGTGCTCACGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCCGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGA

Protein sequence

MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS
Homology
[Close]
BLAST of Cp4.1LG09g05950 vs. Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.3e-85
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNITKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]
BLAST of Cp4.1LG09g05950 vs. Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 314.3 bits (804), Expect = 8.7e-85
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of Cp4.1LG09g05950 vs. Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP N TKS KA G DLRVHFKNTRETA ALRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD+L VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]
BLAST of Cp4.1LG09g05950 vs. Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-76
Identity = 142/167 (85.03%), Postives = 151/167 (90.42%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P N TKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]
BLAST of Cp4.1LG09g05950 vs. Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-76
Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P N TKS KA G DLRVHFKNTRETA ALR++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]
BLAST of Cp4.1LG09g05950 vs. TrEMBL
Match: A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 3.8e-95
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. TrEMBL
Match: I3NMN7_HEVBR (60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.7e-93
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREP+N TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L++SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SKSKK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. TrEMBL
Match: M5XS28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012087mg PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.1e-92
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELIL+EKEEPVKKEPE+QLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILAEKEEPVKKEPESQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. TrEMBL
Match: A0A061E6A4_THECC (Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_008866 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.4e-91
Identity = 172/183 (93.99%), Postives = 176/183 (96.17%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQALRSG 180

Query: 181 ASS 184
            SS
Sbjct: 181 VSS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. TrEMBL
Match: A5B412_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 4.8e-90
Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNA++KGLDVDSL +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK  A+R G
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSHAVRGG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. TAIR10
Match: AT1G27400.1 (AT1G27400.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 317.0 bits (811), Expect = 7.6e-87
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNITKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]
BLAST of Cp4.1LG09g05950 vs. TAIR10
Match: AT1G67430.1 (AT1G67430.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 314.3 bits (804), Expect = 4.9e-86
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of Cp4.1LG09g05950 vs. NCBI nr
Match: gi|659090496|ref|XP_008446047.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 5.5e-95
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. NCBI nr
Match: gi|802724253|ref|XP_012085663.1| (PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas])

HSP 1 Score: 349.4 bits (895), Expect = 3.9e-93
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSA+FILDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           A+S
Sbjct: 181 AAS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. NCBI nr
Match: gi|313586527|gb|ADR71274.1| (60S ribosomal protein L17A [Hevea brasiliensis])

HSP 1 Score: 349.4 bits (895), Expect = 3.9e-93
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREP+N TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L++SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SKSKK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. NCBI nr
Match: gi|449452899|ref|XP_004144196.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cp4.1LG09g05950 vs. NCBI nr
Match: gi|645230887|ref|XP_008222138.1| (PREDICTED: 60S ribosomal protein L17-2 [Prunus mume])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 176/183 (96.17%), Postives = 179/183 (97.81%), Query Frame = 1 

Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELIL+EKEEPVKKEPE+QLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILAEKEEPVKKEPESQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g05950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL171_ARATH1.3e-8590.2360S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1[more]
RL172_ARATH8.7e-8589.2060S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2[more]
RL17_MAIZE1.1e-7987.0660S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1[more]
RL171_HORVU1.1e-7685.0360S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1[more]
RL172_HORVU2.5e-7682.4660S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1[more]
BLAST of Cp4.1LG09g05950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPZ4_CUCSA3.8e-9598.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1[more]
I3NMN7_HEVBR2.7e-9395.0860S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1[more]
M5XS28_PRUPE5.1e-9295.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012087mg PE=3 SV=1[more]
A0A061E6A4_THECC4.4e-9193.99Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_0... [more]
A5B412_VITVI4.8e-9092.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1[more]
BLAST of Cp4.1LG09g05950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27400.17.6e-8790.23 Ribosomal protein L22p/L17e family protein[more]
AT1G67430.14.9e-8689.20 Ribosomal protein L22p/L17e family protein[more]
BLAST of Cp4.1LG09g05950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090496|ref|XP_008446047.1|5.5e-9598.91PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo][more]
gi|802724253|ref|XP_012085663.1|3.9e-9395.63PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas][more]
gi|313586527|gb|ADR71274.1|3.9e-9395.0860S ribosomal protein L17A [Hevea brasiliensis][more]
gi|449452899|ref|XP_004144196.1|1.5e-9295.63PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus][more]
gi|645230887|ref|XP_008222138.1|2.5e-9296.17PREDICTED: 60S ribosomal protein L17-2 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018260Ribosomal_L22/L17_CS
IPR005721Ribosomal_L22/L17_euk/arc
IPR001063Ribosomal_L22
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006508 proteolysis
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008237 metallopeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g05950.1Cp4.1LG09g05950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001063Ribosomal protein L22/L17GENE3DG3DSA:3.90.470.10coord: 1..157
score: 1.1
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 19..151
score: 5.5
IPR001063Ribosomal protein L22/L17unknownSSF54843Ribosomal protein L22coord: 1..154
score: 9.16
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealPANTHERPTHR1159360S RIBOSOMAL PROTEIN L17coord: 2..173
score: 5.0E
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMsTIGR01038TIGR01038coord: 4..154
score: 4.9
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 127..151
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g05950Cucsa.075630Cucumber (Gy14) v1cgycpeB0120
Cp4.1LG09g05950CmaCh12G000730Cucurbita maxima (Rimu)cmacpeB167
Cp4.1LG09g05950CmaCh18G007040Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g05950CmoCh18G006930Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g05950CmoCh12G000570Cucurbita moschata (Rifu)cmocpeB143
Cp4.1LG09g05950Cla022976Watermelon (97103) v1cpewmB056
Cp4.1LG09g05950Csa5G589950Cucumber (Chinese Long) v2cpecuB047
Cp4.1LG09g05950MELO3C011873Melon (DHL92) v3.5.1cpemeB021
Cp4.1LG09g05950ClCG11G013750Watermelon (Charleston Gray)cpewcgB019
Cp4.1LG09g05950CSPI05G21490Wild cucumber (PI 183967)cpecpiB042
Cp4.1LG09g05950Lsi04G006740Bottle gourd (USVL1VR-Ls)cpelsiB030
Cp4.1LG09g05950MELO3C011873.2Melon (DHL92) v3.6.1cpemedB025
Cp4.1LG09g05950CsaV3_5G030340Cucumber (Chinese Long) v3cpecucB0051
Cp4.1LG09g05950Bhi07G001522Wax gourdcpewgoB0054
Cp4.1LG09g05950CsGy5G021010Cucumber (Gy14) v2cgybcpeB588
Cp4.1LG09g05950Carg20453Silver-seed gourdcarcpeB0886
Cp4.1LG09g05950Carg21233Silver-seed gourdcarcpeB0970
Cp4.1LG09g05950Carg14260Silver-seed gourdcarcpeB0341
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g05950Cp4.1LG07g00710Cucurbita pepo (Zucchini)cpecpeB060
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g05950Cucumber (Gy14) v2cgybcpeB154
Cp4.1LG09g05950Melon (DHL92) v3.6.1cpemedB043
Cp4.1LG09g05950Cucumber (Chinese Long) v3cpecucB0035
Cp4.1LG09g05950Wax gourdcpewgoB0032
Cp4.1LG09g05950Cucurbita pepo (Zucchini)cpecpeB033
Cp4.1LG09g05950Cucumber (Gy14) v1cgycpeB1037
Cp4.1LG09g05950Cucurbita maxima (Rimu)cmacpeB694
Cp4.1LG09g05950Cucurbita moschata (Rifu)cmocpeB646
Cp4.1LG09g05950Wild cucumber (PI 183967)cpecpiB030
Cp4.1LG09g05950Cucumber (Chinese Long) v2cpecuB034
Cp4.1LG09g05950Bottle gourd (USVL1VR-Ls)cpelsiB045
Cp4.1LG09g05950Watermelon (Charleston Gray)cpewcgB054
Cp4.1LG09g05950Watermelon (97103) v1cpewmB022
Cp4.1LG09g05950Melon (DHL92) v3.5.1cpemeB037