Cucsa.075630 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.075630
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description60S ribosomal protein L17
Locationscaffold00789 : 275679 .. 278836 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTCTGCTCGCAGGAGGGTCTCAAGTTTTGTAGAGAACTAGCATCCGCCGCCATGGTATAATGCATCTCTTAGTATCTATGCATGGTTATGATTTTTCGATACTAGCCAAGTATCTGAATTCTGTTTGATGTTCATTGTCTTCTTAACAGGTTAAGTACTCAAGGGAGCCGGATAACCCCACCAAGTGTAAGTTTGATCGTATTCTTGTTCGTGTTACGTTGATTATTCGCTATGTATTTAGTTTATTTTTCACTATTTCTGAAGCGTTGGAGTAATGTAAGAAGTGGGTAATCTGATACTTGTTTTTTTATTTCTGCTCAGCCTGCAAAGCGCGAGGATCTGACCTCAGAGTCCATTTTAAGGTAGCGTAGCAGCTCAACGTGTTTTCTCCCTTCATTGTTTTTCTCACAACGTTTTTAGTTTTTTATTACGTTGTTATTTTATTGCACACTCCTGTGAAATATTATGCTCTACGAGGTCTGGCGTATTGTTTTAAAATTTGCTTCATTGAGATTAATCATTTGGAAAAATTTTGTGGTTGCTAGTTTTCGAATCTGAGTAATGCCTTACATGGTATTCTTAATTTTGCAATGATATAATATGATATGATGTTATTGTATTGATGGTCTGAACATACATGATTGCCTGTGAACAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGTATCGTTATTGGGTGAACCTCTGTATAGATAATAGCTGAAGGTTCAGTAAATGATGCAACATACTCTTTGTAGTTATGTGTCATAATATATATTTGGTTGATAATTTTTTGATTGTGTAAGCTAAATATACTAATTTGCACTAATGTAACTTGGTATTGAGGATGTGGTGATTGTCTGAGATGTCCCGTTATCAACCTGATGAAAAAAGCAGCGCTCTATTGCCTATTTTATGAATAGTGCTCTCGTAAATGTCAGGGAAACTGATTGTATTGTTATTGGGTGAACCTCTGTGGAACTGATTGCTGAAGGTTCAGTAAATGATGCTACATTTTTTTCTTCATATAATCTATAAGTTAATATAAAGAAAGATAAATGGTCCTTTGAGGTACATCAATTGCCGATGGGCCCTATCTTGTTTAACTCAAAGAACATGGTCAACTTTATTAATGATTTATTTTTAGAATAACAATTCGTTAGTAAATGGTATTCTATTCTACTTTTACATAATATGTGGAAACTGTTATACATTTAGTGCATTAGATTATGATTTTCTGTATCCTGATGAAAAAAGCAGGGCTTTGTTGCCTTTTGTGGATAAGGCTCTCGTAAACTTCAGGAAAACTAAGTGCATTGTTATTGGGTGAACCAATGTAGATTTAGTTGCTTATGGTTCAGTAAATGATGCTACATTTCTATAGATTGAATGCATAAAAAGAAGAGTGACTTTTGTAGATGGAGCATTACATTTTCACTCTTTATCAGATTTCGTTTGCAAATGTTCAGATGTTAATGTTATTGTTTCATTTACTTAGAATTATATGAATGGTCCAGTCGTGATTATAATACCTGATTAAAAAAGCAGGGTTCTGTTTCCTTTTGTGAATGGGGTCCTCGTTAAGTTCAGGGAAAATGAATGCATTGTTATTGGGTGAACCTCTGTAAAGTTAGTTGCTAAAGGTTCAGTAAATGATGCTACATGAAAATAATATACAGCTTAGTGTGACACAAGTGGTTCAAAGTCCAACTGGTAACACTCCCATCTTAGATTGAAAGTTTTTTATTATAAAAGATTCAGTCTGTCTCTGGTGATTGAATTGATTTACAAATGTCCTTGAAATATTCTTTTCAAGGCATGGCTCTGTCTTAGGGTTCAATCATAAAATTCCTGTTCTTGTGTATTTATGGATTTTTTTACAGTTTTATTGAGCATGAATAAATGGATCCGTATTTCATTCCTGTGCAGCATTATTTACTGTATCCACTATGTTTTTTATGTTTGCAGAATACACGTGAGACTGCTCATGCCCTCAGAAAGTTGCCTTTGGCCAAGGCAAAAAGATACTTAGAGGATGTTCTTGCCCACAAGCAGGCTATACCATTTCGACGTTTTTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCGAAATTTATTTTAGATCTTCTTAAGAATGCTGAGAGTAATGCCGAAGTACGTATTTTACTCACACATCCTAGTCGCCTTTTGGTTATTTTTTAATTTCTCCTTAATTCGAACAATGCTGTGCCTCCATTTAGGTTAAAGGACTGGATGTTGATTCTCTCATCGTATCCCACATTCAAGTGAACCAAGCTCAAAAGCAAAGACGTCGCACATACCGTGCCCACGGAAGAATTAACCGTATGCTTCTCAATATCTCAAATATAAATCTTATCATTTCTGATTAGATCATTACACATCCAATATGGATTTTGATCATTTTGTTTTGCAGCCTACATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTTAAGAAAGAGGTAAACTCTAGACTTTAAAATTTAATGGCATCTATGTTGTGTGTTTTGTTAAGGGCTTCTCCTTGAATTCTTTTTTTCCATTCTGGTGGCAGCCTGAGACCCAATTGGCAACGAGTAAATCCAAGAAATCTCAAGCCCTCCGCAGTGGTGCTTCATCTTGATCAATATTATTGCTGCATTAAGTGTTCTTTTTTTTTCTTTTTTTTTTTCCTTTTAAAAGATTCGTTTCTTTGATCATTATAGAATGAGTTTGTTACGAATCCCTTGCCCCCAACTTTGTAGTTTATTATCAAATCTCATCGATCATGTTTTATTTGTTAGGAATCATTTCCAAATTTTGGATTTTCGTTCCTTTTAAGCAATAGAGCTTATACAACGAAACTTTCTTTCACTCTCCCCTCTGTTGGTTCACGTTTGCTTTAGGTAATTGTGGTTCAAAACGTGAATGATGATTTTGTTGTCATAACTATTTTTTTTGGTTGTATTTGAAGATTATTGTCATAATTTTCAACAGTTCATAGTCGAATTGTAAATTTACTTTGGCTCAATTTCTGATTCAGTTGTG

mRNA sequence

TTGTTCTGCTCGCAGGAGGGTCTCAAGTTTTGTAGAGAACTAGCATCCGCCGCCATGGTTAAGTACTCAAGGGAGCCGGATAACCCCACCAAGTCCTGCAAAGCGCGAGGATCTGACCTCAGAGTCCATTTTAAGAATACACGTGAGACTGCTCATGCCCTCAGAAAGTTGCCTTTGGCCAAGGCAAAAAGATACTTAGAGGATGTTCTTGCCCACAAGCAGGCTATACCATTTCGACGTTTTTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCGAAATTTATTTTAGATCTTCTTAAGAATGCTGAGAGTAATGCCGAAGTTAAAGGACTGGATGTTGATTCTCTCATCGTATCCCACATTCAAGTGAACCAAGCTCAAAAGCAAAGACGTCGCACATACCGTGCCCACGGAAGAATTAACCCCTACATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTTAAGAAAGAGCCTGAGACCCAATTGGCAACGAGTAAATCCAAGAAATCTCAAGCCCTCCGCAGTGGTGCTTCATCTTGATCAATATTATTGCTGCATTAAGTGttctttttttttctttttttttttccttttAAAAGATTCGTTTCTTTGATCATTATAGAATGAGTTTGTTACGAATCCCTTGCCCCCAACTTTGTAGTTTATTATCAAATCTCATCGATCATGTTTTATTTGTTAGGAATCATTTCCAAATTTTGGATTTTCGTTCCTTTTAAGCAATAGAGCTTATACAACGAAACTTTCTTTCACTCTCCCCTCTGTTGGTTCACGTTTGCTTTAGGTAATTGTGGTTCAAAACGTGAATGATGATTTTGTTGTCATAACTATTTTTTTTGGTTGTATTTGAAGATTATTGTCATAATTTTCAACAGTTCATAGTCGAATTGTAAATTTACTTTGGCTCAATTTCTGATTCAGTTGTG

Coding sequence (CDS)

ATGGTTAAGTACTCAAGGGAGCCGGATAACCCCACCAAGTCCTGCAAAGCGCGAGGATCTGACCTCAGAGTCCATTTTAAGAATACACGTGAGACTGCTCATGCCCTCAGAAAGTTGCCTTTGGCCAAGGCAAAAAGATACTTAGAGGATGTTCTTGCCCACAAGCAGGCTATACCATTTCGACGTTTTTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCGAAATTTATTTTAGATCTTCTTAAGAATGCTGAGAGTAATGCCGAAGTTAAAGGACTGGATGTTGATTCTCTCATCGTATCCCACATTCAAGTGAACCAAGCTCAAAAGCAAAGACGTCGCACATACCGTGCCCACGGAAGAATTAACCCCTACATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTTAAGAAAGAGCCTGAGACCCAATTGGCAACGAGTAAATCCAAGAAATCTCAAGCCCTCCGCAGTGGTGCTTCATCTTGA

Protein sequence

MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS*
Homology
[Close]
BLAST of Cucsa.075630 vs. Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 321.6 bits (823), Expect = 5.5e-87
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKS A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of Cucsa.075630 vs. Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-85
Identity = 159/183 (86.89%), Postives = 169/183 (92.35%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK      G
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK------G 176

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 176

[Close]
BLAST of Cucsa.075630 vs. Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 9.1e-82
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA ALRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD+L VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]
BLAST of Cucsa.075630 vs. Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-78
Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]
BLAST of Cucsa.075630 vs. Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-78
Identity = 142/171 (83.04%), Postives = 154/171 (90.06%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETA ALR++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]
BLAST of Cucsa.075630 vs. TrEMBL
Match: A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.3e-98
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. TrEMBL
Match: I3NMN7_HEVBR (60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-95
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREP+N TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L++SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SKSKKSQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. TrEMBL
Match: A0A061E6A4_THECC (Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_008866 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.5e-94
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SKSKKSQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQALRSG 180

Query: 181 ASS 184
            SS
Sbjct: 181 VSS 183

[Close]
BLAST of Cucsa.075630 vs. TrEMBL
Match: M5XS28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012087mg PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.6e-93
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELIL+EKEEPVKKEPE+QLATSKSKKSQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILAEKEEPVKKEPESQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. TrEMBL
Match: A5B412_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.6e-93
Identity = 172/183 (93.99%), Postives = 177/183 (96.72%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNA++KGLDVDSL +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKS A+R G
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSHAVRGG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. TAIR10
Match: AT1G67430.1 (AT1G67430.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 321.6 bits (823), Expect = 3.1e-88
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKS A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]
BLAST of Cucsa.075630 vs. TAIR10
Match: AT1G27400.1 (AT1G27400.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 317.0 bits (811), Expect = 7.6e-87
Identity = 159/183 (86.89%), Postives = 169/183 (92.35%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK      G
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK------G 176

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 176

[Close]
BLAST of Cucsa.075630 vs. NCBI nr
Match: gi|659090496|ref|XP_008446047.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo])

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-98
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. NCBI nr
Match: gi|1009152998|ref|XP_015894398.1| (PREDICTED: 60S ribosomal protein L17-2 [Ziziphus jujuba])

HSP 1 Score: 358.2 bits (918), Expect = 8.5e-96
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRETA A+RKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSL VSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. NCBI nr
Match: gi|802724253|ref|XP_012085663.1| (PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas])

HSP 1 Score: 357.5 bits (916), Expect = 1.4e-95
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSA+FILDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           A+S
Sbjct: 181 AAS 183

[Close]
BLAST of Cucsa.075630 vs. NCBI nr
Match: gi|313586527|gb|ADR71274.1| (60S ribosomal protein L17A [Hevea brasiliensis])

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-95
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREP+N TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD+L++SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SKSKKSQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]
BLAST of Cucsa.075630 vs. NCBI nr
Match: gi|449452899|ref|XP_004144196.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 7.2e-95
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1 

Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

The following BLAST results are available for this feature:
BLAST of Cucsa.075630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL172_ARATH5.5e-8789.7760S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2[more]
RL171_ARATH1.4e-8586.8960S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1[more]
RL17_MAIZE9.1e-8287.6560S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1[more]
RL171_HORVU1.2e-7885.6360S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1[more]
RL172_HORVU1.6e-7883.0460S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1[more]
BLAST of Cucsa.075630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPZ4_CUCSA1.3e-98100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1[more]
I3NMN7_HEVBR1.3e-9595.6360S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1[more]
A0A061E6A4_THECC1.5e-9495.08Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_0... [more]
M5XS28_PRUPE1.6e-9395.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012087mg PE=3 SV=1[more]
A5B412_VITVI1.6e-9393.99Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1[more]
BLAST of Cucsa.075630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67430.13.1e-8889.77 Ribosomal protein L22p/L17e family protein[more]
AT1G27400.17.6e-8786.89 Ribosomal protein L22p/L17e family protein[more]
BLAST of Cucsa.075630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090496|ref|XP_008446047.1|1.8e-98100.00PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo][more]
gi|1009152998|ref|XP_015894398.1|8.5e-9697.27PREDICTED: 60S ribosomal protein L17-2 [Ziziphus jujuba][more]
gi|802724253|ref|XP_012085663.1|1.4e-9596.17PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas][more]
gi|313586527|gb|ADR71274.1|1.9e-9595.6360S ribosomal protein L17A [Hevea brasiliensis][more]
gi|449452899|ref|XP_004144196.1|7.2e-9595.63PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001063Ribosomal_L22
IPR005721Ribosomal_L22/L17_euk/arc
IPR018260Ribosomal_L22/L17_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.075630.1Cucsa.075630.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001063Ribosomal protein L22/L17GENE3DG3DSA:3.90.470.10coord: 1..157
score: 1.2
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 19..151
score: 5.5
IPR001063Ribosomal protein L22/L17unknownSSF54843Ribosomal protein L22coord: 1..154
score: 9.42
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealHAMAPMF_01331_ARibosomal_L22_Acoord: 2..154
score: 24
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealPANTHERPTHR1159360S RIBOSOMAL PROTEIN L17coord: 2..176
score: 2.1E
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMsTIGR01038TIGR01038coord: 4..154
score: 7.2
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 127..151
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.075630Cla022976Watermelon (97103) v1cgywmB080
Cucsa.075630Csa5G589950Cucumber (Chinese Long) v2cgycuB073
Cucsa.075630MELO3C011873Melon (DHL92) v3.5.1cgymeB077
Cucsa.075630ClCG11G013750Watermelon (Charleston Gray)cgywcgB076
Cucsa.075630CSPI05G21490Wild cucumber (PI 183967)cgycpiB076
Cucsa.075630CmaCh12G000730Cucurbita maxima (Rimu)cgycmaB0123
Cucsa.075630CmaCh18G007040Cucurbita maxima (Rimu)cgycmaB0125
Cucsa.075630CmoCh18G006930Cucurbita moschata (Rifu)cgycmoB0122
Cucsa.075630CmoCh12G000570Cucurbita moschata (Rifu)cgycmoB0119
Cucsa.075630Lsi04G006740Bottle gourd (USVL1VR-Ls)cgylsiB076
Cucsa.075630Cp4.1LG09g05950Cucurbita pepo (Zucchini)cgycpeB0120
Cucsa.075630Cp4.1LG07g00710Cucurbita pepo (Zucchini)cgycpeB0125
Cucsa.075630MELO3C011873.2Melon (DHL92) v3.6.1cgymedB076
Cucsa.075630CsaV3_5G030340Cucumber (Chinese Long) v3cgycucB076
Cucsa.075630Cla97C11G219700Watermelon (97103) v2cgywmbB072
Cucsa.075630Bhi07G001522Wax gourdcgywgoB087
Cucsa.075630Carg14260Silver-seed gourdcarcgyB0285
Cucsa.075630Carg20453Silver-seed gourdcarcgyB0697
Cucsa.075630Carg21233Silver-seed gourdcarcgyB0772
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.075630Cucumber (Chinese Long) v3cgycucB075
Cucsa.075630Watermelon (97103) v2cgywmbB074
Cucsa.075630Wax gourdcgywgoB086
Cucsa.075630Cucumber (Gy14) v1cgycgyB024
Cucsa.075630Cucurbita maxima (Rimu)cgycmaB0126
Cucsa.075630Cucurbita moschata (Rifu)cgycmoB0123
Cucsa.075630Wild cucumber (PI 183967)cgycpiB073
Cucsa.075630Cucumber (Chinese Long) v2cgycuB072
Cucsa.075630Melon (DHL92) v3.5.1cgymeB078
Cucsa.075630Watermelon (Charleston Gray)cgywcgB078
Cucsa.075630Watermelon (97103) v1cgywmB078
Cucsa.075630Cucurbita pepo (Zucchini)cgycpeB0123
Cucsa.075630Bottle gourd (USVL1VR-Ls)cgylsiB077
Cucsa.075630Melon (DHL92) v3.6.1cgymedB077