Carg09289 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09289
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S ribosomal protein L17
Location	Cucurbita_argyrosperma_scaffold_018 : 413536 .. 415384 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAGGGGTTGTTCCTCTCTCCTTATAAACCTAATTCAAGCATTTCTCCTTTCTGTTCACGGCGGAATCCAACTCTTCTTCAGAACCCCAAGTTGCAGCCGTCGCCATGGTTCGTCTTCTATCTTCGTGATTTCCCTTACCTTACGATGTTATCTGAGTTTTTTTGTTAGCTATTAATCTTCAATTTCGGTTTTTGTTCGTTGTTTCAGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATGTTCAATACTCTGATTTGATTTGTTTATCGTCTACCGGTTTGTATTTTTATCTTTTCGCCTTGAACTGACACCCTGTTGTTTCTCTCTTCAGCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGGTAGGGTTTATTCCGCTTTGTTGATCTGCATTCTTTCGGTATAACAATCGTGTAGAAGTGCTATGAACTAGAAATTGAATGGTGTGTTTTTTTCATGGGCTTGACTCCCATTTTGATACCTCGCATATAATTTTCTGTTTTGTTTAACGTGCTCCTTTCTCTTATTGAGTGTCCTTCAATAGTTTTCTGTATGTAATTGATTGATTTAAGTGATAGTATATTAGGGCGTTTGTTAGTGATGTCGTCTTAAAATGTTCGTTTTGAAAAACAATAGCTGTTGCCGTCTAGGAGCTTTTGAATTTTCAAGGCATGAGAGCGAATACTAAAAGAAGAATCAATATCGTATTTTTTTTTTTTGTTTCTTTCGTCAACAGTAACATTTCTCTGTACTTCTTTGTACCCTGATGATAAAAGCAGGGCTCTGTTGCCTCCTGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCCTTGTTATTGGGTGAACCTCTGTAACTAATAGTGTCTGAAGGTTCAGTAAATGATGCTACATAATTGAGCTTGTACTTTGACTTGCATATTTCGTTACTATATGTTGGTGCATAGACTCACCACAACTTGTTTGTTTTTTCATTTTATAGAACACAAGGGAAACTGCACATGCTATCAGAAAGTTGCCATTGGCCAAGGCCAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTATGTGTTTCCACTTTTTGTCTCTCCCTGAACTGGTGTTATAATCTTCTTCTTCCTCTTGCTAATAATTGTTTCTGCCTTTCAGGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCGTATGTTATTGCTACAGTTTACTTATACTTCTATGGAAGTTCATGCTTCAACATATTACCTTACCCGTCTATTTCCATTCCATTTTTCTTTTTGGTTGGCAGCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGGTAATCAAACAGATTTCCCAACTACTTTTCTGCTGTAAAGAATTGGTTCAGTTAGACGTATTTCTTACTTTTGTTATTCATTTACAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGATTGGCATAAGTATAAACTCTGTTGTGGGTTTTGCTATGCCATTTCTTTTTTGAAG

mRNA sequence

TGTAGGGGTTGTTCCTCTCTCCTTATAAACCTAATTCAAGCATTTCTCCTTTCTGTTCACGGCGGAATCCAACTCTTCTTCAGAACCCCAAGTTGCAGCCGTCGCCATGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCTATCAGAAAGTTGCCATTGGCCAAGGCCAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGATTGGCATAAGTATAAACTCTGTTGTGGGTTTTGCTATGCCATTTCTTTTTTGAAG

Coding sequence (CDS)

ATGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCTATCAGAAAGTTGCCATTGGCCAAGGCCAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGA

Protein sequence

MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS

Homology

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BLAST of Carg09289 vs. NCBI nr
Match: XP_004144196.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata])

HSP 1 Score: 357.8 bits (917), Expect = 2.3e-95
Identity = 183/199 (91.96%), Postives = 183/199 (91.96%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETAHAIRKLPLAKA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLATGKPKKGQAIRSGASS
Sbjct: 181 QLATGKPKKGQAIRSGASS 183

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BLAST of Carg09289 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.3 bits (913), Expect = 6.8e-95
Identity = 182/199 (91.46%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETAHAIRKLPL KA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAHAIRKLPLVKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLATGKPKKGQAIRSGASS
Sbjct: 181 QLATGKPKKGQAIRSGASS 183

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BLAST of Carg09289 vs. NCBI nr
Match: XP_008445497.1 (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 3.4e-94
Identity = 181/199 (90.95%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETA AIRKLPLAKA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAFAIRKLPLAKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVDLLHVSH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLATGKPKKGQAIRSGASS
Sbjct: 181 QLATGKPKKGQAIRSGASS 183

[Close]

BLAST of Carg09289 vs. NCBI nr
Match: XP_022997268.1 (60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 354.0 bits (907), Expect = 3.4e-94
Identity = 181/199 (90.95%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETAHAIRKLPLAKA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPET
Sbjct: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLATGKPKKGQA+RSGASS
Sbjct: 181 QLATGKPKKGQALRSGASS 183

[Close]

BLAST of Carg09289 vs. NCBI nr
Match: XP_022951813.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 348.6 bits (893), Expect = 1.4e-92
Identity = 178/199 (89.45%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETAHAIRKLPL KA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAHAIRKLPLVKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVDLLHVSH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLATGK KKG+AIRSGASS
Sbjct: 181 QLATGKSKKGRAIRSGASS 183

[Close]

BLAST of Carg09289 vs. TAIR10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 304.3 bits (778), Expect = 5.5e-83
Identity = 156/192 (81.25%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYS+EPDN TK                SCKARGSDLRVHFKNTRETAHAIRKLPL KA
Sbjct: 1   MVKYSQEPDNQTK----------------SCKARGSDLRVHFKNTRETAHAIRKLPLIKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE
Sbjct: 61  KRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L +SH+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 175

Query: 181 QLATGKPKKGQA 193
           QLA  K KK  A
Sbjct: 181 QLA-AKSKKSAA 175

[Close]

BLAST of Carg09289 vs. TAIR10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 303.5 bits (776), Expect = 9.4e-83
Identity = 155/190 (81.58%), Postives = 163/190 (85.79%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYS+EPDN TK                SCKARG+DLRVHFKNTRETAHAIRKLPL KA
Sbjct: 1   MVKYSQEPDNITK----------------SCKARGADLRVHFKNTRETAHAIRKLPLNKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE
Sbjct: 61  KRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L +SH+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 173

Query: 181 QLATGKPKKG 191
           QLA  K KKG
Sbjct: 181 QLA-AKSKKG 173

[Close]

BLAST of Carg09289 vs. Swiss-Prot
Match: sp|P51413|RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 1.0e-81
Identity = 156/192 (81.25%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYS+EPDN TK                SCKARGSDLRVHFKNTRETAHAIRKLPL KA
Sbjct: 1   MVKYSQEPDNQTK----------------SCKARGSDLRVHFKNTRETAHAIRKLPLIKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE
Sbjct: 61  KRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L +SH+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 175

Query: 181 QLATGKPKKGQA 193
           QLA  K KK  A
Sbjct: 181 QLA-AKSKKSAA 175

[Close]

BLAST of Carg09289 vs. Swiss-Prot
Match: sp|Q93VI3|RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.7e-81
Identity = 155/190 (81.58%), Postives = 163/190 (85.79%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYS+EPDN TK                SCKARG+DLRVHFKNTRETAHAIRKLPL KA
Sbjct: 1   MVKYSQEPDNITK----------------SCKARGADLRVHFKNTRETAHAIRKLPLNKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAE
Sbjct: 61  KRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L +SH+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 173

Query: 181 QLATGKPKKG 191
           QLA  K KKG
Sbjct: 181 QLA-AKSKKG 173

[Close]

BLAST of Carg09289 vs. Swiss-Prot
Match: sp|O48557|RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.7e-78
Identity = 147/186 (79.03%), Postives = 158/186 (84.95%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYS+EP NPTK                S KA G DLRVHFKNTRETA A+RKLPL KA
Sbjct: 1   MVKYSQEPGNPTK----------------SAKAMGRDLRVHFKNTRETAFALRKLPLTKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+
Sbjct: 61  KRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNAD 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L+VSH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE + 
Sbjct: 121 VKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADN 170

Query: 181 QLATGK 187
            +A  K
Sbjct: 181 IVAARK 170

[Close]

BLAST of Carg09289 vs. Swiss-Prot
Match: sp|P35266|RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.1e-75
Identity = 141/183 (77.05%), Postives = 152/183 (83.06%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYS +P NPTK                S KA G DLRVHFKNTRETA A+RK+PL KA
Sbjct: 1   MVKYSTDPANPTK----------------SAKAMGRDLRVHFKNTRETAFALRKMPLNKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L++SH+QVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+
Sbjct: 121 VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAES 167

Query: 181 QLA 184
            +A
Sbjct: 181 HIA 167

[Close]

BLAST of Carg09289 vs. Swiss-Prot
Match: sp|P35267|RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.0e-74
Identity = 140/186 (75.27%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSR+P NPTK                S KA G DLRVHFKNTRETA A+R++PL KA
Sbjct: 1   MVKYSRDPSNPTK----------------SAKACGKDLRVHFKNTRETAFALRRMPLGKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L++SH+QVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE + 
Sbjct: 121 VKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADN 170

Query: 181 QLATGK 187
            +A  K
Sbjct: 181 VVAPRK 170

[Close]

BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A1S3BCV8|A0A1S3BCV8_CUCME (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.2e-94
Identity = 181/199 (90.95%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETA AIRKLPLAKA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAFAIRKLPLAKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVDLLHVSH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLATGKPKKGQAIRSGASS
Sbjct: 181 QLATGKPKKGQAIRSGASS 183

[Close]

BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A0A0KIM9|A0A0A0KIM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365170 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 6.7e-91
Identity = 173/182 (95.05%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 18  SPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFR 77
           SP     + F S+CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFR
Sbjct: 3   SPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFR 62

Query: 78  RFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVN 137
           RFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVN
Sbjct: 63  RFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVN 122

Query: 138 QAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGA 197
           QAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGA
Sbjct: 123 QAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGA 182

Query: 198 SS 200
           SS
Sbjct: 183 SS 184

[Close]

BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A1S3BDN4|A0A1S3BDN4_CUCME (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.1e-90
Identity = 175/199 (87.94%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETAHA+RKLPLAKA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAHALRKLPLAKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L VSH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLAT K KK QA+RSGASS
Sbjct: 181 QLATSKSKKSQALRSGASS 183

[Close]

BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A0A0KPZ4|A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.1e-90
Identity = 175/199 (87.94%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTK                SCKARGSDLRVHFKNTRETAHA+RKLPLAKA
Sbjct: 1   MVKYSREPDNPTK----------------SCKARGSDLRVHFKNTRETAHALRKLPLAKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L VSH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLAT K KK QA+RSGASS
Sbjct: 181 QLATSKSKKSQALRSGASS 183

[Close]

BLAST of Carg09289 vs. TrEMBL
Match: tr|A0A0S3S1A7|A0A0S3S1A7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G428100 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 7.4e-90
Identity = 174/199 (87.44%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MVKYSREPDNPTKCNALSPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKA 60
           MVKYSREPDNPTKC  L    F+ I+  +SCKARG+DLRVHFKNTRETA AIRKLPL KA
Sbjct: 1   MVKYSREPDNPTKCKFL----FIIIISQNSCKARGADLRVHFKNTRETAFAIRKLPLVKA 60

Query: 61  KRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAE 120
           KRYLEDVLAHKQAIPFRRFC GVGRTAQAKNRHSNGQGRWP KSAKFILDLLKNAESNAE
Sbjct: 61  KRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAE 120

Query: 121 VKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180
           VKGLDVD L++SH+QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET
Sbjct: 121 VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPET 180

Query: 181 QLATGKPKKGQAIRSGASS 200
           QLAT K KKG A+RSGASS
Sbjct: 181 QLATSK-KKG-ALRSGASS 193

The following BLAST results are available for this feature:

BLAST of Carg09289 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144196.1	2.3e-95	91.96	PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S rib...	[more]
XP_023545223.1	6.8e-95	91.46	60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008445497.1	3.4e-94	90.95	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]
XP_022997268.1	3.4e-94	90.95	60S ribosomal protein L17-2-like [Cucurbita maxima]	[more]
XP_022951813.1	1.4e-92	89.45	60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023002842.1 60S riboso...	[more]

BLAST of Carg09289 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67430.1	5.5e-83	81.25	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	9.4e-83	81.58	Ribosomal protein L22p/L17e family protein	[more]

BLAST of Carg09289 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P51413\|RL172_ARATH	1.0e-81	81.25	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
sp\|Q93VI3\|RL171_ARATH	1.7e-81	81.58	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
sp\|O48557\|RL17_MAIZE	8.7e-78	79.03	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
sp\|P35266\|RL171_HORVU	4.1e-75	77.05	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
sp\|P35267\|RL172_HORVU	2.0e-74	75.27	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Carg09289 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCV8\|A0A1S3BCV8_CUCME	2.2e-94	90.95	60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV...	[more]
tr\|A0A0A0KIM9\|A0A0A0KIM9_CUCSA	6.7e-91	95.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365170 PE=3 SV=1	[more]
tr\|A0A1S3BDN4\|A0A1S3BDN4_CUCME	1.1e-90	87.94	60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1	[more]
tr\|A0A0A0KPZ4\|A0A0A0KPZ4_CUCSA	1.1e-90	87.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1	[more]
tr\|A0A0S3S1A7\|A0A0S3S1A7_PHAAN	7.4e-90	87.44	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015934	large ribosomal subunit
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR018260	Ribosomal_L22/L17_CS
IPR005721	Ribosomal_L22/L17_euk/arc
IPR001063	Ribosomal_L22
IPR036394	Ribosomal_L22/L17_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09289-RA	Carg09289-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	G3DSA:3.90.470.10		coord: 27..198 e-value: 3.2E-72 score: 244.0
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	SSF54843	Ribosomal protein L22	coord: 29..170
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 33..167 e-value: 1.7E-40 score: 137.4
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 31..167 e-value: 3.6066E-36 score: 122.985
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 29..170 e-value: 8.5E-58 score: 192.5
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 30..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..199
None	No IPR available	PANTHER	PTHR11593:SF17	SUBFAMILY NOT NAMED	coord: 30..186
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 143..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09289	Cla021996	Watermelon (97103) v1	carwmB0134
Carg09289	Csa6G365170	Cucumber (Chinese Long) v2	carcuB0158
Carg09289	MELO3C011453	Melon (DHL92) v3.5.1	carmeB0142
Carg09289	ClCG08G010100	Watermelon (Charleston Gray)	carwcgB0138
Carg09289	CSPI06G19350	Wild cucumber (PI 183967)	carcpiB0163
Carg09289	Cucsa.056280	Cucumber (Gy14) v1	carcgyB0168
Carg09289	CmaCh05G004280	Cucurbita maxima (Rimu)	carcmaB0189
Carg09289	CmoCh05G004480	Cucurbita moschata (Rifu)	carcmoB0196
Carg09289	Lsi08G008690	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09289	Cp4.1LG11g03680	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09289	CsGy6G018820	Cucumber (Gy14) v2	carcgybB0156
Carg09289	MELO3C011453.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09289	CsaV3_6G032270	Cucumber (Chinese Long) v3	carcucB0166
Carg09289	Cla97C08G152940	Watermelon (97103) v2	carwmbB0150
Carg09289	Bhi04G001155	Wax gourd	carwgoB0174

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09289	Carg20453	Silver-seed gourd	carcarB162

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09289	Wax gourd	carwgoB0177
Carg09289	Silver-seed gourd	carcarB168
Carg09289	Cucurbita maxima (Rimu)	carcmaB0185
Carg09289	Cucurbita moschata (Rifu)	carcmoB0194
Carg09289	Cucurbita pepo (Zucchini)	carcpeB0207