CmoCh05G004480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G004480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L17-1
Location	Cmo_Chr05 : 2087374 .. 2089442 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCTCCTCTCTGTTCACGGCGGAATCCAACTCTTCTTCAGAACCCCAAGTTGCAGCCGTCGCCATGGTTCGTCTTCTATCTTCGTGATTTCCCCTACCTTACGATGTTATCTGAGTTTTTTGTTAGCTATTAATCTTCAATTCCGGTTTTTGTTCGTTGTTTCAGGTCAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTAATGCTCTTTCTCCGCTTTTTTTCTTATGGATCTTGTTCGATTCATGTTCAATACTCTGATTTGATTTGTTTATCGTCTACCGGTTTGTATTTTCATCTTTTTGCCTTGAACTGACACCCTGTTGTTTCTCTTTTCAGCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGGTAGGGTTTATTCCGCTTTGTTGATCTGCATTCTTTCGGTATAACAATCGTGTAGAAGTACTATGAACTAGAAATTGAATGGTGTGTTTTTTTCATGGGCTTGACTCCCATTTTGATACCTCGCATATAAATTTCTGTTTTGTTTAACGTGCTCCTTTCTCTTATTGAGTGTCCTTCAATAGTTTTCTGTATGTAATTGATTGGTTTAAGTGATATTATATTAGGGCGTTTGTTAGTGATGTCGTCTTAAAATGTTCGTTTTGAAAAACAATAGCTGTTGCCGTCTAGGAGCTTTTGAATTTTCAAGGCATGAGAGCGAATGCTTAAAGAAGAATCAATATCGTATTTTTTTTTTGTTTCTTTCGTCAACAGTAACTTTTCTCAGTACTTCTCTGTACCCTGATGATAAAAGCAGGGCTCTGTTGCCTCCTGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCCTTGTTATTGGGTGAACCTCTGTAACTAATAGTGTCTGAAGGTTCAGTAAATGATGCTACATAATTGAGCTTGTACTTTGACTTGCATATTTCGTTACTATATGTTGGTGCATAGACTCACCACAACTTGTTTGTTTTTTCATTTTATAGAACACAAGGGAAACTGCACATGCTATCAGAAAGCTGCCATTGGCCAAGGCGAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTATGTGTTTCCACTATTCGTCTCTCCCTGAACTGGTGTTATAGTCTTTTTCCTTCTCTTGCTAATAATTGTTTCTGCCTTTCAGGTTAAGGGTCTTGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCGTATGTTATTGCTACAGTTTACTTATATTTCTATGGAAGTTCATGCGTCAACATATTGCCTTACCCTTCTATTTCCATTCCATTTTTTCTTTTTGGTTGGCAGCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGGTAATCAAACAGATTTCCCAACTACTTTTCTGCTGTAAAGAATTGGTTGAGTTAGACGTATTTCTTACTTTTGTTATTCATTTACAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGATTGGCATAAGTATAAACTCTGTTGTGGGTTTTGCTATGCCATTTCTTTTTTGAAGTGAGTTTAATTATTGGTCATTATATAGATCTAAGGGTTATTATTTAGATGTTTTGTGTGACATGGTTTATGTGGAACCTTTTCTAGCTTCAATTTTCTTCACGTTGCAATCACATTCTGGTTCTTGCTTTTTTTACATGTTGATGAGATCTTTTGACGCCTTAATTTCATAGTTGAAAAAAGTCTTCACCCCAATTTGGGAGCCGAGTAAATGGTCAGGCCATTGGTCTTGTCCTCTCAAACGTTAAAATTCTAGGCATAAA

mRNA sequence

CATTTCTCCTCTCTGTTCACGGCGGAATCCAACTCTTCTTCAGAACCCCAAGTTGCAGCCGTCGCCATGGTCAAGTATTCGAGGGAACCAGACAATCCCACCAAGTCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCTATCAGAAAGCTGCCATTGGCCAAGGCGAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTTAAGGGTCTTGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGATTGGCATAAGTATAAACTCTGTTGTGGGTTTTGCTATGCCATTTCTTTTTTGAAGTGAGTTTAATTATTGGTCATTATATAGATCTAAGGGTTATTATTTAGATGTTTTGTGTGACATGGTTTATGTGGAACCTTTTCTAGCTTCAATTTTCTTCACGTTGCAATCACATTCTGGTTCTTGCTTTTTTTACATGTTGATGAGATCTTTTGACGCCTTAATTTCATAGTTGAAAAAAGTCTTCACCCCAATTTGGGAGCCGAGTAAATGGTCAGGCCATTGGTCTTGTCCTCTCAAACGTTAAAATTCTAGGCATAAA

Coding sequence (CDS)

ATGGTCAAGTATTCGAGGGAACCAGACAATCCCACCAAGTCCTGCAAGGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCTATCAGAAAGCTGCCATTGGCCAAGGCGAAGAGGTACCTTGAGGATGTTCTTGCCCACAAGCAGGCCATTCCCTTCCGTCGCTTCTGTGGTGGTGTTGGAAGAACTGCTCAGGCAAAGAATAGGCATTCCAATGGCCAAGGTCGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTTAAGGGTCTTGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTGAACCAAGCTCAGAAGCAAAGGCGTCGCACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCCTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAAGAAGAGCCTGTTAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGAAAACCTAAGAAAGGTCAAGCTATCCGTAGTGGCGCTTCCTCTTGA

Homology

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BLAST of CmoCh05G004480 vs. Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 312.4 bits (799), Expect = 3.3e-84
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

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BLAST of CmoCh05G004480 vs. Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.7e-84
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

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BLAST of CmoCh05G004480 vs. Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.9e-80
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSH+QV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

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BLAST of CmoCh05G004480 vs. Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-77
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

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BLAST of CmoCh05G004480 vs. Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.7e-77
Identity = 140/170 (82.35%), Postives = 153/170 (90.00%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

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BLAST of CmoCh05G004480 vs. TrEMBL
Match: A0A0A0KPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.1e-93
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

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BLAST of CmoCh05G004480 vs. TrEMBL
Match: A0A061E6A4_THECC (Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_008866 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-91
Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA  K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQALRSG 180

Query: 181 ASS 184
            SS
Sbjct: 181 VSS 183

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BLAST of CmoCh05G004480 vs. TrEMBL
Match: I3NMN7_HEVBR (60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-91
Identity = 171/183 (93.44%), Postives = 176/183 (96.17%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREP+N TKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPENATKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA  K KK QAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKSKKSQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

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BLAST of CmoCh05G004480 vs. TrEMBL
Match: A5B412_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.2e-90
Identity = 168/183 (91.80%), Postives = 174/183 (95.08%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVL HKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNA++KGLDVD L++SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK  A+R G
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSHAVRGG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

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BLAST of CmoCh05G004480 vs. TrEMBL
Match: A0A0A0KIM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365170 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-89
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 1


Query: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74

Query: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134

Query: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184

[Close]

BLAST of CmoCh05G004480 vs. TAIR10
Match: AT1G67430.1 (AT1G67430.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 312.4 bits (799), Expect = 1.9e-85
Identity = 156/176 (88.64%), Postives = 163/176 (92.61%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of CmoCh05G004480 vs. TAIR10
Match: AT1G27400.1 (AT1G27400.1 Ribosomal protein L22p/L17e family protein)

HSP 1 Score: 311.6 bits (797), Expect = 3.2e-85
Identity = 155/174 (89.08%), Postives = 163/174 (93.68%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of CmoCh05G004480 vs. NCBI nr
Match: gi|449452899|ref|XP_004144196.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 4.0e-98
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmoCh05G004480 vs. NCBI nr
Match: gi|659089418|ref|XP_008445497.1| (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 5.8e-97
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmoCh05G004480 vs. NCBI nr
Match: gi|659090496|ref|XP_008446047.1| (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 3.0e-93
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmoCh05G004480 vs. NCBI nr
Match: gi|1009152998|ref|XP_015894398.1| (PREDICTED: 60S ribosomal protein L17-2 [Ziziphus jujuba])

HSP 1 Score: 346.3 bits (887), Expect = 3.3e-92
Identity = 173/183 (94.54%), Postives = 177/183 (96.72%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVD L+VSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmoCh05G004480 vs. NCBI nr
Match: gi|802724253|ref|XP_012085663.1| (PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas])

HSP 1 Score: 345.5 bits (885), Expect = 5.6e-92
Identity = 170/183 (92.90%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPLAKAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVMAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSA+FILDLLKNAESNAEVKGLDVD L++SH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAT K KK QA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           A+S
Sbjct: 181 AAS 183

The following BLAST results are available for this feature:

BLAST of CmoCh05G004480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL172_ARATH	3.3e-84	88.64	60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2	[more]
RL171_ARATH	5.7e-84	89.08	60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=2 SV=1	[more]
RL17_MAIZE	2.9e-80	86.47	60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1	[more]
RL171_HORVU	1.3e-77	84.43	60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1	[more]
RL172_HORVU	6.7e-77	82.35	60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1	[more]

BLAST of CmoCh05G004480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPZ4_CUCSA	2.1e-93	95.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589950 PE=3 SV=1	[more]
A0A061E6A4_THECC	2.0e-91	92.90	Ribosomal protein L22p/L17e family protein isoform 2 OS=Theobroma cacao GN=TCM_0...	[more]
I3NMN7_HEVBR	2.0e-91	93.44	60S ribosomal protein L17A OS=Hevea brasiliensis GN=RPL17A PE=2 SV=1	[more]
A5B412_VITVI	2.2e-90	91.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011749 PE=3 SV=1	[more]
A0A0A0KIM9_CUCSA	1.1e-89	99.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G365170 PE=3 SV=1	[more]

BLAST of CmoCh05G004480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67430.1	1.9e-85	88.64	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	3.2e-85	89.08	Ribosomal protein L22p/L17e family protein	[more]

BLAST of CmoCh05G004480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452899\|ref\|XP_004144196.1\|	4.0e-98	100.00	PREDICTED: 60S ribosomal protein L17-2 [Cucumis sativus]	[more]
gi\|659089418\|ref\|XP_008445497.1\|	5.8e-97	98.91	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]
gi\|659090496\|ref\|XP_008446047.1\|	3.0e-93	95.63	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo]	[more]
gi\|1009152998\|ref\|XP_015894398.1\|	3.3e-92	94.54	PREDICTED: 60S ribosomal protein L17-2 [Ziziphus jujuba]	[more]
gi\|802724253\|ref\|XP_012085663.1\|	5.6e-92	92.90	PREDICTED: 60S ribosomal protein L17-2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001063	Ribosomal_L22
IPR005721	Ribosomal_L22/L17_euk/arc
IPR018260	Ribosomal_L22/L17_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004480.1	CmoCh05G004480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	GENE3D	G3DSA:3.90.470.10		coord: 1..157 score: 5.8
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 19..151 score: 1.2
IPR001063	Ribosomal protein L22/L17	unknown	SSF54843	Ribosomal protein L22	coord: 1..154 score: 3.92
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	HAMAP	MF_01331_A	Ribosomal_L22_A	coord: 2..154 score: 2
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 2..170 score: 1.9E
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAMs	TIGR01038	TIGR01038	coord: 4..154 score: 9.3
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G004480	Cucsa.056280	Cucumber (Gy14) v1	cgycmoB0069
CmoCh05G004480	Csa6G365170	Cucumber (Chinese Long) v2	cmocuB796
CmoCh05G004480	MELO3C011453	Melon (DHL92) v3.5.1	cmomeB715
CmoCh05G004480	CSPI06G19350	Wild cucumber (PI 183967)	cmocpiB800
CmoCh05G004480	Lsi08G008690	Bottle gourd (USVL1VR-Ls)	cmolsiB728
CmoCh05G004480	MELO3C011453.2	Melon (DHL92) v3.6.1	cmomedB812
CmoCh05G004480	CsaV3_6G032270	Cucumber (Chinese Long) v3	cmocucB0937
CmoCh05G004480	Cla97C08G152940	Watermelon (97103) v2	cmowmbB800
CmoCh05G004480	Bhi04G001155	Wax gourd	cmowgoB0948
CmoCh05G004480	CsGy6G018820	Cucumber (Gy14) v2	cgybcmoB825
CmoCh05G004480	Carg09289	Silver-seed gourd	carcmoB0196
CmoCh05G004480	Carg20453	Silver-seed gourd	carcmoB0859

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G004480	Wax gourd	cmowgoB0941
CmoCh05G004480	Cucurbita moschata (Rifu)	cmocmoB150
CmoCh05G004480	Cucurbita maxima (Rimu)	cmacmoB192
CmoCh05G004480	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G004480	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G004480	Watermelon (97103) v1	cmowmB746
CmoCh05G004480	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G004480	Cucurbita pepo (Zucchini)	cmocpeB744