Carg20259 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCCGGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCCGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCATCCACCAACTAACAATATTCTATTTCACCAATCTTTTAGCCTCCTCAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGTCGCCGTCGCCGCCACCGCCGCTCTCCTCCGATAACGTCCTACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGGTGAGAGGTTTATCATCACTTCAAGATGACACAATTAAACATATCATTCCAGAACATGAAACAGTTGATTATTTCCAATAATACAATAATTTATTCAAGACTAAAATTTAAAATCCAAAAAATGAGCCGTCACATACCCTTTTTCATTTAATAAATGAGTCAAAAAGTCACATTATTATTTCAGTTTTTTTTCAAATAATTTCTCCTATTAATGGAAATATTCAACTATGATGCTCAACCTCCATGCAAAGGATCATTGAAAAAGCTTGGCTTTTCAAGAACCCAAAGAGTTCTTTTTTCTTTTTGGGTCTCGAGTATAATATTTAAATTAATATATATATATATAAATGATTAAATGGGGTATGAATAATAAATTTAAAAATGGGTATGGCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGAAGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGGTTTTTTCTTTTTATTTTTTTATTTTTTTATTTTTTTTTTTGTTCTCTCTTATATTCTTCTTTATCTTACCCTACTTGAAATTATGAAATAATTCTAAAGAATAATTCATTTCTTATTGTACCTACATATAATTTGATAGATTCTATATGCCAACAACCATAAAGTTAGTAATTGGAAAGATAATTTCTAACTTTATAGTATAAATGTAATAATTCAAATAATTTAACTGCATATAGTTTGATTCTTCACTAAAATAAGTAATTTATGCAAAGTTATTGAGTAATGTTCGTATAGTTTTCAATTTCATCCTTCATCTTTTTGCTTTTGTCATTCAAACTACACTTTTTTATTTAGATGGTAACCATGGAAAAGGAAGATTTTAAAACTATCCCAAAATTGGTCTAAAAAGCAAAGAAAACATTTGTTGAATCACAAATGACAAACAATCAATCAATCAATCTACTTCATATCTTCGGACCATGATAATAATTTTGTAGGTTTTGTTCATATGGCTCATTGTTTTCCAAAAATTCTCATAATATTATTTGTGTTCTTGAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACGATGACGTTGCAAAGAATTATCCAGAGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA ATGACAATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCCGGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCCGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCATCCACCAACTAACAATATTCTATTTCACCAATCTTTTAGCCTCCTCAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGTCGCCGTCGCCGCCACCGCCGCTCTCCTCCGATAACGTCCTACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGAAGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACGATGACGTTGCAAAGAATTATCCAGAGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA ATGACAATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCCGGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCCGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCATCCACCAACTAACAATATTCTATTTCACCAATCTTTTAGCCTCCTCAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGTCGCCGTCGCCGCCACCGCCGCTCTCCTCCGATAACGTCCTACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGAAGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACGATGACGTTGCAAAGAATTATCCAGAGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTNNILFHQSFSLLNPSLKTNGLLQQTGSSPSPSPPPPLSSDNVLHKLSLPAGDFQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDDVAKNYPEQWSHGQEEEQGEEEEEEANCDDNWIKYFVDAYSTNLIP
BLAST of Carg20259 vs. NCBI nr
Match: XP_022946965.1 (zinc finger protein CONSTANS-LIKE 14-like [Cucurbita moschata]) HSP 1 Score: 419.9 bits (1078), Expect = 5.9e-114 Identity = 223/235 (94.89%), Postives = 225/235 (95.74%), Query Frame = 0
BLAST of Carg20259 vs. NCBI nr
Match: XP_023532290.1 (two-component response regulator-like PRR1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532291.1 two-component response regulator-like PRR1 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 411.4 bits (1056), Expect = 2.1e-111 Identity = 226/235 (96.17%), Postives = 227/235 (96.60%), Query Frame = 0
BLAST of Carg20259 vs. NCBI nr
Match: XP_023007329.1 (two-component response regulator-like PRR1 [Cucurbita maxima]) HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100 Identity = 214/235 (91.06%), Postives = 217/235 (92.34%), Query Frame = 0
BLAST of Carg20259 vs. NCBI nr
Match: XP_022986933.1 (uncharacterized protein LOC111484524 isoform X1 [Cucurbita maxima]) HSP 1 Score: 284.3 bits (726), Expect = 3.9e-73 Identity = 171/241 (70.95%), Postives = 188/241 (78.01%), Query Frame = 0
BLAST of Carg20259 vs. NCBI nr
Match: XP_022944273.1 (uncharacterized protein LOC111448769 isoform X1 [Cucurbita moschata]) HSP 1 Score: 283.5 bits (724), Expect = 6.6e-73 Identity = 173/241 (71.78%), Postives = 187/241 (77.59%), Query Frame = 0
BLAST of Carg20259 vs. TAIR10
Match: AT5G59990.1 (CCT motif family protein) HSP 1 Score: 101.7 bits (252), Expect = 6.4e-22 Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0
BLAST of Carg20259 vs. TAIR10
Match: AT1G63820.1 (CCT motif family protein) HSP 1 Score: 81.6 bits (200), Expect = 6.9e-16 Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 0
BLAST of Carg20259 vs. TAIR10
Match: AT2G33350.1 (CCT motif family protein) HSP 1 Score: 77.8 bits (190), Expect = 9.9e-15 Identity = 38/57 (66.67%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of Carg20259 vs. TAIR10
Match: AT3G12890.1 (activator of spomin::LUC2) HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14 Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 0
BLAST of Carg20259 vs. TAIR10
Match: AT5G41380.1 (CCT motif family protein) HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14 Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 0
BLAST of Carg20259 vs. Swiss-Prot
Match: sp|Q9SK53|COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06 Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
BLAST of Carg20259 vs. Swiss-Prot
Match: sp|Q940T9|COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06 Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0
BLAST of Carg20259 vs. Swiss-Prot
Match: sp|O50055|COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 8.1e-06 Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of Carg20259 vs. Swiss-Prot
Match: sp|Q9FHH8|COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05 Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 0
BLAST of Carg20259 vs. Swiss-Prot
Match: sp|O82117|CO3_ORYSJ (Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 3.1e-05 Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 0
BLAST of Carg20259 vs. TrEMBL
Match: tr|A0A0A0KG14|A0A0A0KG14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301610 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 3.8e-69 Identity = 176/248 (70.97%), Postives = 192/248 (77.42%), Query Frame = 0
BLAST of Carg20259 vs. TrEMBL
Match: tr|A0A1S3CK56|A0A1S3CK56_CUCME (zinc finger protein CONSTANS-LIKE 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501889 PE=4 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 4.2e-68 Identity = 161/242 (66.53%), Postives = 174/242 (71.90%), Query Frame = 0
BLAST of Carg20259 vs. TrEMBL
Match: tr|A0A1S3CK62|A0A1S3CK62_CUCME (zinc finger protein CONSTANS-LIKE 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501889 PE=4 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 4.2e-68 Identity = 161/243 (66.26%), Postives = 175/243 (72.02%), Query Frame = 0
BLAST of Carg20259 vs. TrEMBL
Match: tr|A0A2N9E254|A0A2N9E254_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS858 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 9.8e-33 Identity = 92/172 (53.49%), Postives = 109/172 (63.37%), Query Frame = 0
BLAST of Carg20259 vs. TrEMBL
Match: tr|A0A2R6QT85|A0A2R6QT85_ACTCH (Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14917 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31 Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |