CmoCh01G006030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G006030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger protein CONSTANS-LIKE 1
LocationCmo_Chr01 : 3067137 .. 3067981 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGGTAATTAATTTTACTAATTAATTTTTTTAATTTTATGTATATAAAATGTTAAAAGTTCGAATTTTTATAAGTCGGGAAAATTTGGCAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGATTTACATCCTCCCGAGTCTTACTTTCTTTTTTTCTTCTTATTGTACCCTAAAACGTATGTAAAAGAAAAATATCTTTTGATTTCTCTTTTAAGAGTCGATGTTCGAACCTCTATCTCGTAATTGTTTGTATTGAAAGAAAAACAAAACAATCCG

mRNA sequence

ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGATTTACATCCTCCCGAGTCTTACTTTCTTTTTTTCTTCTTATTGTACCCTAAAACGTATGTAAAAGAAAAATATCTTTTGATTTCTCTTTTAAGAGTCGATGTTCGAACCTCTATCTCGTAATTGTTTGTATTGAAAGAAAAACAAAACAATCCG

Coding sequence (CDS)

ATGCACAGTCACGCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTCATATATTCCCACAACCCTTCCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAAAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCTGTGGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA
Homology
[Close]
BLAST of CmoCh01G006030 vs. TrEMBL
Match: A0A0A0LUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.2e-47
Identity = 136/247 (55.06%), Postives = 153/247 (61.94%), Query Frame = 1 

Query: 1   MHSHAAATADASLSHLQPP------PPFPSFSNFIYSHNPS-----------PMVEALE- 60
           MHS + A  D S+ HL  P      P FPSF NF  SH+ S           P++E+ E 
Sbjct: 1   MHSFSPAV-DTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPEL 60

Query: 61  -----VSYSGSSSGGCSSYGSPTS-HPGL---------------SHGPTSR--------- 120
                +SYSGSS G CSSYGSPTS  P L                HGP +R         
Sbjct: 61  LPSEVISYSGSS-GPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120

Query: 121 RPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFN 180
             + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRNFN
Sbjct: 121 PAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFN 180

Query: 181 KKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASW 195
           KKIKYECRKTLADSR+RIRGRFARNEE EN NSTSSP+E WSCY+N M E     DD SW
Sbjct: 181 KKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSW 240

[Close]
BLAST of CmoCh01G006030 vs. TrEMBL
Match: B9N6M0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24010g PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 1 

Query: 46  SGSSSGGCSSYGSPTSHPGLSHGPTSRR-------------------PLTRAYSSGHNER 105
           + S++ GCSSYGSP+S   +S     +                    P+ R +S+G  + 
Sbjct: 57  TSSTASGCSSYGSPSSLRSISSHSFQKNGYHCHFASHPHDFLDMDTSPVRRVFSTGDLQH 116

Query: 106 GGE-ERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLAD 165
           G   E    SESSLIIE M +A  Y+P+EK+ RIERY++KRNQRNFNKKIKYECRK LAD
Sbjct: 117 GHRAESPLLSESSLIIESMSKACKYSPEEKKERIERYRSKRNQRNFNKKIKYECRKILAD 176

Query: 166 SRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM-AEDDASWTTFLDSYSLNFVP 201
           SR RIRGRFARN+E E      +P   WS        EDD +W  FLDS+S N VP
Sbjct: 177 SRPRIRGRFARNDEIE-----KNPQLQWSNVSGEEDEEDDDNWIDFLDSFSENSVP 227

[Close]
BLAST of CmoCh01G006030 vs. TrEMBL
Match: A0A067LHT7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05627 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.5e-24
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1 

Query: 74  PLTRAYSSGHNERGGE-ERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFN 133
           P+ R +S+G  + G + +   SSESS+IIE M +A  Y+P+EK+ RIERY++KR QRNFN
Sbjct: 115 PVRRVFSTGDLQHGHKADSPLSSESSVIIESMSKACKYSPEEKKERIERYRSKRTQRNFN 174

Query: 134 KKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAED-DASWTTFL 193
           KKIKY CRKTLADSR RIRGRFARN+E E      +P   WS       ED D +W+ FL
Sbjct: 175 KKIKYACRKTLADSRPRIRGRFARNDEIE-----KNPQAQWSNISGEEDEDYDDNWSDFL 234

Query: 194 DSYSLNFVP 201
           D++S N +P
Sbjct: 235 DAFSANSIP 238

[Close]
BLAST of CmoCh01G006030 vs. TrEMBL
Match: A0A067GCA8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042936mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 94/217 (43.32%), Postives = 118/217 (54.38%), Query Frame = 1 

Query: 12  SLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSG--SSSGGCSSYGSPTSHPGLSHGP 71
           SL+   P PP    +   Y H    + E     Y    SS+ GCSSYGSP+  P L    
Sbjct: 11  SLAVPLPLPPHALLAPPDYHHQRLAVAELESPLYMAHSSSTSGCSSYGSPSQQPTLMQRS 70

Query: 72  TSRR-----------------------PLTRAYSSG--HN-ERG--GEERAWS---SESS 131
           TS +                       P+ R +S+G  H   RG  G+  + S   SESS
Sbjct: 71  TSSQSLQNNSGVPPFMSANEFLDMDTSPVRRVFSTGDLHGINRGHYGQRLSGSPLASESS 130

Query: 132 LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNE 191
           +IIEGM RA PY+P+EK+ RIERY++KR QRNFNK+IKY CRKTLADSR RIRGRFARNE
Sbjct: 131 MIIEGMNRACPYSPEEKKERIERYRSKRTQRNFNKRIKYACRKTLADSRPRIRGRFARNE 190

Query: 192 EAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYS 196
           E E ++        W+    A  ED+ +W  +LDS S
Sbjct: 191 EIEKNSEVQ-----WNRV--AGEEDEDNWINYLDSVS 220

[Close]
BLAST of CmoCh01G006030 vs. TrEMBL
Match: W9REL7_9ROSA (Zinc finger protein CONSTANS-LIKE 1 OS=Morus notabilis GN=L484_007188 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 73/136 (53.68%), Postives = 88/136 (64.71%), Query Frame = 1 

Query: 74  PLTRAYSSGHNERGG-------EERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKR 133
           P+ R YS+G  +R          E   SSESS IIEGM RA  Y+ +EKR RIERY++KR
Sbjct: 126 PVRRVYSTGDLQRINMVQHSYRSESPLSSESSAIIEGMSRACRYSQEEKRERIERYRSKR 185

Query: 134 NQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM--AEDD 193
           NQRNFNKKIKY CRKTLADSR RIRGRFARNEE +  +S +     WS  +      +DD
Sbjct: 186 NQRNFNKKIKYACRKTLADSRPRIRGRFARNEEIDQKSSQAQ----WSHINGGEEDEDDD 245

Query: 194 ASWTTFLDSYSLNFVP 201
            +W  FLD+ S N +P
Sbjct: 246 ENWINFLDALSSNLIP 257

[Close]
BLAST of CmoCh01G006030 vs. TAIR10
Match: AT5G59990.1 (AT5G59990.1 CCT motif family protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-21
Identity = 82/210 (39.05%), Postives = 105/210 (50.00%), Query Frame = 1 

Query: 15  HLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSG-SSSGGCSSYGSPTS------------ 74
           H  PPPP         S   +  V       SG +  GG SS  SP+S            
Sbjct: 36  HQFPPPPLALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQR 95

Query: 75  ----HPGLSHGPTSRR--------PLTRAYSSGHNERGGEERAWS--SESSLIIEGMRRA 134
               H G S   T+          P+ RA S+G   R     + +  SES+ IIEGM +A
Sbjct: 96  SVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRESSTVWSESNAIIEGMSKA 155

Query: 135 SPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTS 194
             Y+P+EK+ +IE+Y++KRN RNFNK+IKYECRKTLADSR RIRGRFARN+E        
Sbjct: 156 YKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQEQVD 215

Query: 195 SPVETWSCYDNAMAEDDASWTTFLDSYSLN 198
                      A+  D  +W +FLDS+S N
Sbjct: 216 --------VMEAVVGDVDTWASFLDSFSAN 237

[Close]
BLAST of CmoCh01G006030 vs. TAIR10
Match: AT5G41380.1 (AT5G41380.1 CCT motif family protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 1 

Query: 36  PMVEALEVSYSGSSSGGCSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSS 95
           PM+++  +SY+  SS   + + S                + R YS+G  +   E +  S 
Sbjct: 149 PMMDSSNLSYNNLSSPENAFFSSQ---------------MRRVYSTGDLQNNMEMQRSSE 208

Query: 96  ESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGR 155
            S++    E   +   Y+ +E++ +I +Y+ KRNQRNF K IKY CRKTLADSR RIRGR
Sbjct: 209 NSTMPFSEEQNFKVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGR 268

Query: 156 FARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL 192
           FARN+E  E  N      E W   D    +++AS ++F+
Sbjct: 269 FARNDEVVEIPNIEDDDSELWK-LDGLHEKEEASVSSFV 291

[Close]
BLAST of CmoCh01G006030 vs. TAIR10
Match: AT2G33350.1 (AT2G33350.1 CCT motif family protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 104 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 163
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 164 NSTSSPVETWSCYDNAMAEDD 185
           N      + +S + +   EDD
Sbjct: 360 NR-----QAFSSHHDDEDEDD 375

[Close]
BLAST of CmoCh01G006030 vs. TAIR10
Match: AT3G12890.1 (AT3G12890.1 activator of spomin::LUC2)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1 

Query: 88  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSR 147
           GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R
Sbjct: 112 GEQSWGNSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRR 171

Query: 148 KRIRGRFARNEE 160
            R+RGRFARN +
Sbjct: 172 VRVRGRFARNND 183

[Close]
BLAST of CmoCh01G006030 vs. TAIR10
Match: AT1G04500.1 (AT1G04500.1 CCT motif family protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-11
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 113 QEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSN 165
           ++++ +I RY  KRN+RNF+KKIKY CRKTLADSR R+RGRFA+N+E    N
Sbjct: 286 EQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPN 337

[Close]
BLAST of CmoCh01G006030 vs. NCBI nr
Match: gi|778661376|ref|XP_011657991.1| (PREDICTED: two-component response regulator-like APRR9 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 6.0e-47
Identity = 136/247 (55.06%), Postives = 153/247 (61.94%), Query Frame = 1 

Query: 1   MHSHAAATADASLSHLQPP------PPFPSFSNFIYSHNPS-----------PMVEALE- 60
           MHS + A  D S+ HL  P      P FPSF NF  SH+ S           P++E+ E 
Sbjct: 1   MHSFSPAV-DTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPEL 60

Query: 61  -----VSYSGSSSGGCSSYGSPTS-HPGL---------------SHGPTSR--------- 120
                +SYSGSS G CSSYGSPTS  P L                HGP +R         
Sbjct: 61  LPSEVISYSGSS-GPCSSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDTDM 120

Query: 121 RPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFN 180
             + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRNFN
Sbjct: 121 PAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRNFN 180

Query: 181 KKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASW 195
           KKIKYECRKTLADSR+RIRGRFARNEE EN NSTSSP+E WSCY+N M E     DD SW
Sbjct: 181 KKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDGSW 240

[Close]
BLAST of CmoCh01G006030 vs. NCBI nr
Match: gi|659115360|ref|XP_008457517.1| (PREDICTED: uncharacterized protein LOC103497191 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 5.1e-46
Identity = 134/250 (53.60%), Postives = 154/250 (61.60%), Query Frame = 1 

Query: 1   MHSHAAATADASLSHLQPP--------PPFPSFSNFIYSHNPS-----------PMVEAL 60
           MHS + A  D S+ HL  P        P FPSF NF  SH+ S           P++E+ 
Sbjct: 1   MHSFSPAV-DTSIFHLHSPDLIVSSSPPLFPSFPNFSSSHSSSFLLAYSQLALDPVLESP 60

Query: 61  E------VSYSGSSSGGCSSYGSPTS-HPGL---------------SHGPTSR------- 120
           +      +SYSGSS G CSSYGSPTS  P L                HGP +R       
Sbjct: 61  DLLPLEVISYSGSS-GPCSSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGARISSLIDT 120

Query: 121 --RPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRN 180
               + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EK+ RIERYK+KRNQRN
Sbjct: 121 DMPAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKKERIERYKSKRNQRN 180

Query: 181 FNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM------AEDD 195
           FNKKIKYECRKTLADSR+RIRGRFARNEE ENSNSTSSP+E WSCYDN M       +DD
Sbjct: 181 FNKKIKYECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSCYDNPMVKELDTTQDD 240

[Close]
BLAST of CmoCh01G006030 vs. NCBI nr
Match: gi|566150678|ref|XP_006369499.1| (hypothetical protein POPTR_0001s24010g [Populus trichocarpa])

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 1 

Query: 46  SGSSSGGCSSYGSPTSHPGLSHGPTSRR-------------------PLTRAYSSGHNER 105
           + S++ GCSSYGSP+S   +S     +                    P+ R +S+G  + 
Sbjct: 57  TSSTASGCSSYGSPSSLRSISSHSFQKNGYHCHFASHPHDFLDMDTSPVRRVFSTGDLQH 116

Query: 106 GGE-ERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLAD 165
           G   E    SESSLIIE M +A  Y+P+EK+ RIERY++KRNQRNFNKKIKYECRK LAD
Sbjct: 117 GHRAESPLLSESSLIIESMSKACKYSPEEKKERIERYRSKRNQRNFNKKIKYECRKILAD 176

Query: 166 SRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM-AEDDASWTTFLDSYSLNFVP 201
           SR RIRGRFARN+E E      +P   WS        EDD +W  FLDS+S N VP
Sbjct: 177 SRPRIRGRFARNDEIE-----KNPQLQWSNVSGEEDEEDDDNWIDFLDSFSENSVP 227

[Close]
BLAST of CmoCh01G006030 vs. NCBI nr
Match: gi|802552035|ref|XP_012064939.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas])

HSP 1 Score: 119.0 bits (297), Expect = 9.4e-24
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1 

Query: 74  PLTRAYSSGHNERGGE-ERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFN 133
           P+ R +S+G  + G + +   SSESS+IIE M +A  Y+P+EK+ RIERY++KR QRNFN
Sbjct: 115 PVRRVFSTGDLQHGHKADSPLSSESSVIIESMSKACKYSPEEKKERIERYRSKRTQRNFN 174

Query: 134 KKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAED-DASWTTFL 193
           KKIKY CRKTLADSR RIRGRFARN+E E      +P   WS       ED D +W+ FL
Sbjct: 175 KKIKYACRKTLADSRPRIRGRFARNDEIE-----KNPQAQWSNISGEEDEDYDDNWSDFL 234

Query: 194 DSYSLNFVP 201
           D++S N +P
Sbjct: 235 DAFSANSIP 238

[Close]
BLAST of CmoCh01G006030 vs. NCBI nr
Match: gi|743921883|ref|XP_011005012.1| (PREDICTED: uncharacterized protein LOC105111383 [Populus euphratica])

HSP 1 Score: 119.0 bits (297), Expect = 9.4e-24
Identity = 83/186 (44.62%), Postives = 104/186 (55.91%), Query Frame = 1 

Query: 46  SGSSSGGCSSYGSPTSHPGLSHGPTSRR-----------------------------PLT 105
           + S++ GCSSYGSP+S    S     +R                             P+ 
Sbjct: 54  TSSTASGCSSYGSPSSLVSGSCSVNMQRSISSHSFQKNGYHCHFASHPHDFLDMDTSPVR 113

Query: 106 RAYSSGHNERGGE-ERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKI 165
           R +S+G  + G   E    SESS+IIE M +A  Y+P+EK+ RIERY++KRNQRNFNKKI
Sbjct: 114 RVFSTGDLQHGHRAESPLLSESSMIIESMSKACKYSPEEKKERIERYRSKRNQRNFNKKI 173

Query: 166 KYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM-AEDDASWTTFLDSY 201
           KY+CRK LADSR RIRGRFARN+E E      +P   WS        EDD +W  FLDS+
Sbjct: 174 KYQCRKILADSRPRIRGRFARNDEIE-----KNPQHQWSNVSGEEDEEDDDNWIDFLDSF 233

The following BLAST results are available for this feature:
BLAST of CmoCh01G006030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G006030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUR6_CUCSA4.2e-4755.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G497300 PE=4 SV=1[more]
B9N6M0_POPTR1.6e-2547.73Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24010g PE=4 SV=1[more]
A0A067LHT7_JATCU6.5e-2453.49Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05627 PE=4 SV=1[more]
A0A067GCA8_CITSI8.5e-2443.32Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042936mg PE=4 S... [more]
W9REL7_9ROSA8.5e-2453.68Zinc finger protein CONSTANS-LIKE 1 OS=Morus notabilis GN=L484_007188 PE=4 SV=1[more]
BLAST of CmoCh01G006030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59990.11.2e-2139.05 CCT motif family protein[more]
AT5G41380.12.1e-1335.85 CCT motif family protein[more]
AT2G33350.12.3e-1246.91 CCT motif family protein[more]
AT3G12890.13.0e-1252.78 activator of spomin::LUC2[more]
AT1G04500.17.4e-1161.54 CCT motif family protein[more]
BLAST of CmoCh01G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778661376|ref|XP_011657991.1|6.0e-4755.06PREDICTED: two-component response regulator-like APRR9 [Cucumis sativus][more]
gi|659115360|ref|XP_008457517.1|5.1e-4653.60PREDICTED: uncharacterized protein LOC103497191 [Cucumis melo][more]
gi|566150678|ref|XP_006369499.1|2.2e-2547.73hypothetical protein POPTR_0001s24010g [Populus trichocarpa][more]
gi|802552035|ref|XP_012064939.1|9.4e-2453.49PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas][more]
gi|743921883|ref|XP_011005012.1|9.4e-2444.62PREDICTED: uncharacterized protein LOC105111383 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009909 regulation of flower development
biological_process GO:0009416 response to light stimulus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G006030.1CmoCh01G006030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 116..157
score: 4.2
IPR010402CCT domainPROFILEPS51017CCTcoord: 115..157
score: 14
NoneNo IPR availablePANTHERPTHR31319FAMILY NOT NAMEDcoord: 89..197
score: 1.3
NoneNo IPR availablePANTHERPTHR31319:SF1CCT MOTIF FAMILY PROTEINcoord: 89..197
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G006030Cucsa.213590Cucumber (Gy14) v1cgycmoB0617
CmoCh01G006030CmaCh01G005780Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G006030CmaCh02G008470Cucurbita maxima (Rimu)cmacmoB593
CmoCh01G006030CmaCh13G001480Cucurbita maxima (Rimu)cmacmoB226
CmoCh01G006030Cla008269Watermelon (97103) v1cmowmB422
CmoCh01G006030Csa1G497300Cucumber (Chinese Long) v2cmocuB416
CmoCh01G006030MELO3C020684Melon (DHL92) v3.5.1cmomeB382
CmoCh01G006030ClCG03G001780Watermelon (Charleston Gray)cmowcgB403
CmoCh01G006030CSPI06G16590Wild cucumber (PI 183967)cmocpiB479
CmoCh01G006030CSPI01G22660Wild cucumber (PI 183967)cmocpiB420
CmoCh01G006030Lsi02G013810Bottle gourd (USVL1VR-Ls)cmolsiB403
CmoCh01G006030Cp4.1LG20g08740Cucurbita pepo (Zucchini)cmocpeB441
CmoCh01G006030Cp4.1LG02g13080Cucurbita pepo (Zucchini)cmocpeB449
CmoCh01G006030MELO3C020684.2Melon (DHL92) v3.6.1cmomedB439
CmoCh01G006030CsaV3_1G033810Cucumber (Chinese Long) v3cmocucB0500
CmoCh01G006030CsaV3_6G022010Cucumber (Chinese Long) v3cmocucB0569
CmoCh01G006030Cla97C03G052770Watermelon (97103) v2cmowmbB448
CmoCh01G006030Cla97C02G046550Watermelon (97103) v2cmowmbB440
CmoCh01G006030Bhi08G000570Wax gourdcmowgoB0590
CmoCh01G006030CsGy6G016150Cucumber (Gy14) v2cgybcmoB755
CmoCh01G006030CsGy1G022200Cucumber (Gy14) v2cgybcmoB098
CmoCh01G006030Carg21024Silver-seed gourdcarcmoB0990
CmoCh01G006030Carg12350Silver-seed gourdcarcmoB0596
CmoCh01G006030Carg20259Silver-seed gourdcarcmoB0419
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G006030CmoCh13G001530Cucurbita moschata (Rifu)cmocmoB173
CmoCh01G006030CmoCh02G008490Cucurbita moschata (Rifu)cmocmoB356
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G006030Silver-seed gourdcarcmoB0418
CmoCh01G006030Silver-seed gourdcarcmoB0461
CmoCh01G006030Cucumber (Chinese Long) v3cmocucB0547
CmoCh01G006030Cucumber (Chinese Long) v3cmocucB0563
CmoCh01G006030Watermelon (97103) v2cmowmbB453
CmoCh01G006030Watermelon (97103) v2cmowmbB476
CmoCh01G006030Wax gourdcmowgoB0574
CmoCh01G006030Cucurbita moschata (Rifu)cmocmoB354
CmoCh01G006030Cucurbita moschata (Rifu)cmocmoB357
CmoCh01G006030Cucurbita moschata (Rifu)cmocmoB368
CmoCh01G006030Cucumber (Gy14) v1cgycmoB0469
CmoCh01G006030Cucurbita maxima (Rimu)cmacmoB545
CmoCh01G006030Cucurbita maxima (Rimu)cmacmoB594
CmoCh01G006030Melon (DHL92) v3.5.1cmomeB378
CmoCh01G006030Watermelon (Charleston Gray)cmowcgB397
CmoCh01G006030Watermelon (97103) v1cmowmB449
CmoCh01G006030Cucurbita pepo (Zucchini)cmocpeB429
CmoCh01G006030Cucurbita pepo (Zucchini)cmocpeB459
CmoCh01G006030Bottle gourd (USVL1VR-Ls)cmolsiB383
CmoCh01G006030Cucumber (Gy14) v2cgybcmoB483
CmoCh01G006030Melon (DHL92) v3.6.1cmomedB435