Carg20259-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20259-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein CONSTANS-like
Location	Cucurbita_argyrosperma_scaffold_131 : 182871 .. 184532 (+)
Sequence length	708

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCCGGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCCGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCATCCACCAACTAACAATATTCTATTTCACCAATCTTTTAGCCTCCTCAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGTCGCCGTCGCCGCCACCGCCGCTCTCCTCCGATAACGTCCTACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGGTGAGAGGTTTATCATCACTTCAAGATGACACAATTAAACATATCATTCCAGAACATGAAACAGTTGATTATTTCCAATAATACAATAATTTATTCAAGACTAAAATTTAAAATCCAAAAAATGAGCCGTCACATACCCTTTTTCATTTAATAAATGAGTCAAAAAGTCACATTATTATTTCAGTTTTTTTTCAAATAATTTCTCCTATTAATGGAAATATTCAACTATGATGCTCAACCTCCATGCAAAGGATCATTGAAAAAGCTTGGCTTTTCAAGAACCCAAAGAGTTCTTTTTTCTTTTTGGGTCTCGAGTATAATATTTAAATTAATATATATATATATAAATGATTAAATGGGGTATGAATAATAAATTTAAAAATGGGTATGGCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGAAGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGGTTTTTTCTTTTTATTTTTTTATTTTTTTATTTTTTTTTTTGTTCTCTCTTATATTCTTCTTTATCTTACCCTACTTGAAATTATGAAATAATTCTAAAGAATAATTCATTTCTTATTGTACCTACATATAATTTGATAGATTCTATATGCCAACAACCATAAAGTTAGTAATTGGAAAGATAATTTCTAACTTTATAGTATAAATGTAATAATTCAAATAATTTAACTGCATATAGTTTGATTCTTCACTAAAATAAGTAATTTATGCAAAGTTATTGAGTAATGTTCGTATAGTTTTCAATTTCATCCTTCATCTTTTTGCTTTTGTCATTCAAACTACACTTTTTTATTTAGATGGTAACCATGGAAAAGGAAGATTTTAAAACTATCCCAAAATTGGTCTAAAAAGCAAAGAAAACATTTGTTGAATCACAAATGACAAACAATCAATCAATCAATCTACTTCATATCTTCGGACCATGATAATAATTTTGTAGGTTTTGTTCATATGGCTCATTGTTTTCCAAAAATTCTCATAATATTATTTGTGTTCTTGAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACGATGACGTTGCAAAGAATTATCCAGAGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA

mRNA sequence

ATGACAATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCCGGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCCGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCATCCACCAACTAACAATATTCTATTTCACCAATCTTTTAGCCTCCTCAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGTCGCCGTCGCCGCCACCGCCGCTCTCCTCCGATAACGTCCTACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGAAGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACGATGACGTTGCAAAGAATTATCCAGAGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA

Coding sequence (CDS)

ATGACAATCTCCCACTTTCTCTCCGCCGCCTCGCATTCCTCCACCGACACCGCCGGTGTTGATTTTGACTGGTTACCCGGTTCCTCCATCAAGCAATGGAACTCTGAACTTCCCGACAGCTGGGGCGACGGTTCACTGACTTCACCGCCGCAACCCCAAACAATTCATCCACCAACTAACAATATTCTATTTCACCAATCTTTTAGCCTCCTCAACCCTTCTCTCAAAACCAATGGCCTTCTTCAACAAACCGGTTCGTCGCCGTCGCCGTCGCCGCCACCGCCGCTCTCCTCCGATAACGTCCTACACAAGCTATCCCTTCCCGCCGGTGATTTTCAGAGGAATAATCAGAGAGCAGAGAGTCCAGTTTCATGTGAAAGTAGCATCGCCATTGAAGGGATGAGCAGAGCTTGTAGGTACAGTCCAGAAGAGAAGAAGGAGAGAATTCAAAGGTATAGGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCATTGGCCGATAGTCGACCAAGGATTAGAGGACGATTTGCAAGGTACAACGATGACGTTGCAAAGAATTATCCAGAGCAATGGAGTCATGGGCAAGAGGAAGAACAAGGAGAAGAAGAAGAAGAAGAGGCAAATTGTGATGATAATTGGATCAAGTACTTTGTAGATGCATATTCTACGAATCTTATTCCATGA

Protein sequence

MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTNNILFHQSFSLLNPSLKTNGLLQQTGSSPSPSPPPPLSSDNVLHKLSLPAGDFQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDDVAKNYPEQWSHGQEEEQGEEEEEEANCDDNWIKYFVDAYSTNLIP

Homology

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BLAST of Carg20259-RA vs. NCBI nr
Match: XP_022946965.1 (zinc finger protein CONSTANS-LIKE 14-like [Cucurbita moschata])

HSP 1 Score: 419.9 bits (1078), Expect = 5.9e-114
Identity = 223/235 (94.89%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60
           MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN
Sbjct: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60

Query: 61  NILFHQSFSLLNPSLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQRNNQRAE 120
           NILFH +FSLLNPSLKTNGLLQQTGSS        LSSDNVLHKLSLPA DFQRNNQRAE
Sbjct: 61  NILFHHTFSLLNPSLKTNGLLQQTGSS----PSPSLSSDNVLHKLSLPARDFQRNNQRAE 120

Query: 121 SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI 180
           SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI
Sbjct: 121 SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI 180

Query: 181 RGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 236
           RGRFA+YNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP
Sbjct: 181 RGRFAKYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 231

[Close]

BLAST of Carg20259-RA vs. NCBI nr
Match: XP_023532290.1 (two-component response regulator-like PRR1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532291.1 two-component response regulator-like PRR1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.4 bits (1056), Expect = 2.1e-111
Identity = 226/235 (96.17%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60
           MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN
Sbjct: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60

Query: 61  NILFHQSFSLLNPSLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQRNNQRAE 120
           NILFH +FSLLNP LKTNGLLQQTG  XXXXXXXX  SDNVLHKLSLPAGDFQRNNQRAE
Sbjct: 61  NILFHHTFSLLNPYLKTNGLLQQTG-XXXXXXXXXXXSDNVLHKLSLPAGDFQRNNQRAE 120

Query: 121 SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI 180
           SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI
Sbjct: 121 SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI 180

Query: 181 RGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 236
           RGRFARYNDDVAKNYP QWSHGQ XXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP
Sbjct: 181 RGRFARYNDDVAKNYPVQWSHGQEXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 234

[Close]

BLAST of Carg20259-RA vs. NCBI nr
Match: XP_023007329.1 (two-component response regulator-like PRR1 [Cucurbita maxima])

HSP 1 Score: 375.6 bits (963), Expect = 1.3e-100
Identity = 214/235 (91.06%), Postives = 217/235 (92.34%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60
           MTISHFLSAASHSSTDTAGVDFDWLP SSIKQWNSELPDSWGDGSLTSPPQPQTI PPTN
Sbjct: 1   MTISHFLSAASHSSTDTAGVDFDWLPCSSIKQWNSELPDSWGDGSLTSPPQPQTIRPPTN 60

Query: 61  NILFHQSFSLLNPSLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQRNNQRAE 120
           NILFH +FSLLNPSLKTNGL       XXXXXXXX   D + HKLSLPAGDFQRNNQRAE
Sbjct: 61  NILFHHTFSLLNPSLKTNGL---XXXXXXXXXXXXXXXDILQHKLSLPAGDFQRNNQRAE 120

Query: 121 SPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI 180
           SPVSCESSIAI+GMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI
Sbjct: 121 SPVSCESSIAIDGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRI 180

Query: 181 RGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 236
           RGRFARYN DVAKNYP QWSHG XXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP
Sbjct: 181 RGRFARYNYDVAKNYPVQWSHG-XXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 231

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BLAST of Carg20259-RA vs. NCBI nr
Match: XP_022986933.1 (uncharacterized protein LOC111484524 isoform X1 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 3.9e-73
Identity = 171/241 (70.95%), Postives = 188/241 (78.01%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60
           M  S FLSA SHSS D A VDFDWLP SS+K W SE+ DS GDGS TSPPQP T   PTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSVKLWKSEVSDSCGDGSATSPPQPLTFRRPTN 60

Query: 61  NILFHQSFSLLNPSLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDF-----QRN 120
             L  QSFSLLNPSL+T          XXXXXXXX   ++++ +    AGDF     QRN
Sbjct: 61  RFLLDQSFSLLNPSLRTTXXXXXXXXXXXXXXXXXXXXESLVSRPLFQAGDFKEWGWQRN 120

Query: 121 NQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLAD 180
            QRAESPVSCESSI IEG+SRACRYSPEEKKERI+RY+SKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 181 SRPRIRGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYST-NLI 236
           SRPRIRGRFARYND+VAKN+P +WSHGQ  XXXXXXXXXX   +NWIKYF+DAYS+ NLI
Sbjct: 181 SRPRIRGRFARYNDNVAKNFPMKWSHGQ--XXXXXXXXXXXXXENWIKYFIDAYSSANLI 239

[Close]

BLAST of Carg20259-RA vs. NCBI nr
Match: XP_022944273.1 (uncharacterized protein LOC111448769 isoform X1 [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 6.6e-73
Identity = 173/241 (71.78%), Postives = 187/241 (77.59%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPTN 60
           M  S FLSA SHSS D A VDFDWLP SSIK WNSE+ +S GDGS TSPPQP T   PTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 60

Query: 61  NILFHQSFSLLNPSLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDF-----QRN 120
             L  QSF LLNPSL+T          XXXXXXXX    +++ +   PAGDF     QRN
Sbjct: 61  RFLLDQSFGLLNPSLQTXXXXXXXXXXXXXXXXXXXXXXSLVSRPLFPAGDFKEWGWQRN 120

Query: 121 NQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLAD 180
            QRAESPVSCESSI IEG+SRACRYSPEEKKERI+RY+SKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 181 SRPRIRGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYST-NLI 236
           SRPRIRGRFARYND+VAKN P QWSHGQ  XXXXXXXXXX   +NWIKYF+DAYS+ NLI
Sbjct: 181 SRPRIRGRFARYNDNVAKNCPMQWSHGQ--XXXXXXXXXXXXXENWIKYFIDAYSSANLI 239

[Close]

BLAST of Carg20259-RA vs. TAIR10
Match: AT5G59990.1 (CCT motif family protein)

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-22
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 106 SLPAGDFQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKI 165
           +L AGD  R+++R  S V  ES+  IEGMS+A +YSPEEKKE+I     KRN RNFNK+I
Sbjct: 124 ALSAGDLPRSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIXXXXXKRNLRNFNKRI 183

Query: 166 KYACRKSLADSRPRIRGRFARYNDDVAK 194
           KY CRK+LADSRPRIRGRFAR ND++++
Sbjct: 184 KYECRKTLADSRPRIRGRFAR-NDEISQ 210

[Close]

BLAST of Carg20259-RA vs. TAIR10
Match: AT1G63820.1 (CCT motif family protein)

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-16
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 121 SPVSCESSIAI-----EGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLAD 180
           SP++ ESS        E   R  RYS EE+KE+I +YR+KR QRNF K IKYACRK+LAD
Sbjct: 163 SPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLAD 222

Query: 181 SRPRIRGRFARYNDDVAKN 195
           +RPR+RGRFAR ND+V +N
Sbjct: 223 NRPRVRGRFAR-NDEVFEN 240

[Close]

BLAST of Carg20259-RA vs. TAIR10
Match: AT2G33350.1 (CCT motif family protein)

HSP 1 Score: 77.8 bits (190), Expect = 9.9e-15
Identity = 38/57 (66.67%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 134 MSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDD 191
           +++  + SPE++KE+I+RY  KRN+RNFNKKIKYACRK+LADSRPR+RGRFA+ ND+
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK-NDE 355

[Close]

BLAST of Carg20259-RA vs. TAIR10
Match: AT3G12890.1 (activator of spomin::LUC2)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 126 ESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFA 185
           E  I  E  ++  RYS EE+K+RI RY  K+NQRNFNK IKY CRK+LAD R R+RGRFA
Sbjct: 120 EGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFA 179

Query: 186 RYND 190
           R ND
Sbjct: 180 RNND 183

[Close]

BLAST of Carg20259-RA vs. TAIR10
Match: AT5G41380.1 (CCT motif family protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 110 GDFQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYAC 169
           GD Q N +   S  +     + E   +  RYS EE+KE      +KRNQRNF K IKYAC
Sbjct: 180 GDLQNNMEMQRSSENSTMPFSEEQNFKVGRYSAEERKEXXXXXXAKRNQRNFTKTIKYAC 239

Query: 170 RKSLADSRPRIRGRFARYNDDVAK 194
           RK+LADSRPRIRGRFAR ND+V +
Sbjct: 240 RKTLADSRPRIRGRFAR-NDEVVE 262

[Close]

BLAST of Carg20259-RA vs. Swiss-Prot
Match: sp|Q9SK53|COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 137 ACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 190
           A + SP E++ R+ RYR KR  R F K I+YA RK+ A+ RPRI+GRFA+  D
Sbjct: 221 AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273

[Close]

BLAST of Carg20259-RA vs. Swiss-Prot
Match: sp|Q940T9|COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 127 SSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 186
           +S A  G  RA   +  E++ R+ RYR KR  R F K I+YA RK+ A+ RPRI+GRFA+
Sbjct: 277 TSGADPGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 336

Query: 187 YNDDVAKN 195
             D    N
Sbjct: 337 RTDTNESN 344

[Close]

BLAST of Carg20259-RA vs. Swiss-Prot
Match: sp|O50055|COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.1e-06
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 141 SPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 190
           SP +++ R+ RYR K+  R F K I+YA RK+ A+ RPRI+GRFA+  D
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKD 330

[Close]

BLAST of Carg20259-RA vs. Swiss-Prot
Match: sp|Q9FHH8|COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 141 SPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR----YNDDV 192
           S  +++ R+ RYR KR  R F K I+YA RK+ A+SRPRI+GRFA+     NDD+
Sbjct: 281 SSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDI 335

[Close]

BLAST of Carg20259-RA vs. Swiss-Prot
Match: sp|O82117|CO3_ORYSJ (Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.1e-05
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 144 EKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 190
           +++ R+ RYR KR  R F K I+YA RK+ A++RPRI+GRFA+ +D
Sbjct: 267 DREARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSD 312

[Close]

BLAST of Carg20259-RA vs. TrEMBL
Match: tr|A0A0A0KG14|A0A0A0KG14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301610 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.8e-69
Identity = 176/248 (70.97%), Postives = 192/248 (77.42%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFDWLPGSSIKQWNS-ELPDSWGDGSLTSPPQPQTIHPPT 60
           M  S FLSAASHSS D AGVDFDWLP SSIK WNS +  DS GDGS  SPP+P  I P T
Sbjct: 1   MAFSPFLSAASHSSADLAGVDFDWLPDSSIKLWNSDQFSDSCGDGSPPSPPEPLKIRPST 60

Query: 61  NNILFHQS-FSLLNP----SLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQR 120
           NN L H S F LLNP    S  T+  LQ+T SSXXXXXX  +  D  +++   P GDFQ+
Sbjct: 61  NNFLLHPSAFPLLNPDSLQSNDTDSFLQRTFSSXXXXXXAAI--DPPINRPLFPVGDFQK 120

Query: 121 ---NNQRA-ESPVSCESSIA-IEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYAC 180
              NN+R  ESPVSCESSI  IEGMSRACRYSPEEKKERI+RYR+KR+QRNFNKKIKYAC
Sbjct: 121 KNNNNERGDESPVSCESSITIIEGMSRACRYSPEEKKERIERYRTKRHQRNFNKKIKYAC 180

Query: 181 RKSLADSRPRIRGRFARYNDDVAKNYPEQWS-HGQXXXXXXXXXXXXN-CDDNWIKYFVD 236
           RKSLADSRPRIRGRFARYND+V KNYP QW+ H  XXXXXXXXXXXXN C DNWIKYF+D
Sbjct: 181 RKSLADSRPRIRGRFARYNDEVVKNYPVQWNQHXXXXXXXXXXXXXXNSCGDNWIKYFID 240

[Close]

BLAST of Carg20259-RA vs. TrEMBL
Match: tr|A0A1S3CK56|A0A1S3CK56_CUCME (zinc finger protein CONSTANS-LIKE 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501889 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.2e-68
Identity = 161/242 (66.53%), Postives = 174/242 (71.90%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFD-WLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPT 60
           M  S FLSAASHSS D AGVDFD WLP SSIK WNSE  DS GDGS  SPP+P  IHP T
Sbjct: 1   MAFSPFLSAASHSSADIAGVDFDHWLPDSSIKLWNSEFSDSCGDGSPPSPPEPLKIHPST 60

Query: 61  NNILFHQSFSLLN-PSLK-TNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQR--N 120
           NN L HQSF LLN  SL+            XXXXXXXX      +++   PAGDFQ+  N
Sbjct: 61  NNFLLHQSFPLLNHDSLQXXXXXXXXXXXXXXXXXXXXXXXXXXINRPLFPAGDFQKKNN 120

Query: 121 NQRA-ESPVSCESSIA-IEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSL 180
           N+R  ESPVSCESSI  IEGMSRACRYSPEEKKERI+RYR+KRNQRNFNKKIKYACRKSL
Sbjct: 121 NERGDESPVSCESSITIIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL 180

Query: 181 ADSRPRIRGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNL 236
           ADSRPRIRGRFARYND+V KNYP QW+               +C DNWIKYF+D YS NL
Sbjct: 181 ADSRPRIRGRFARYNDEVVKNYPVQWN--LQREEEQQQREANSCGDNWIKYFIDTYSANL 240

[Close]

BLAST of Carg20259-RA vs. TrEMBL
Match: tr|A0A1S3CK62|A0A1S3CK62_CUCME (zinc finger protein CONSTANS-LIKE 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501889 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.2e-68
Identity = 161/243 (66.26%), Postives = 175/243 (72.02%), Query Frame = 0


Query: 1   MTISHFLSAASHSSTDTAGVDFD-WLPGSSIKQWNSELPDSWGDGSLTSPPQPQTIHPPT 60
           M  S FLSAASHSS D AGVDFD WLP SSIK WNSE  DS GDGS  SPP+P  IHP T
Sbjct: 1   MAFSPFLSAASHSSADIAGVDFDHWLPDSSIKLWNSEFSDSCGDGSPPSPPEPLKIHPST 60

Query: 61  NNILFHQSFSLLN-PSLKT-NGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQR--- 120
           NN L HQSF LLN  SL++           XXXXXXXX      +++   PAGDFQ+   
Sbjct: 61  NNFLLHQSFPLLNHDSLQSXXXXXXXXXXXXXXXXXXXXXXXXXINRPLFPAGDFQQKKN 120

Query: 121 NNQRA-ESPVSCESSIA-IEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKS 180
           NN+R  ESPVSCESSI  IEGMSRACRYSPEEKKERI+RYR+KRNQRNFNKKIKYACRKS
Sbjct: 121 NNERGDESPVSCESSITIIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKS 180

Query: 181 LADSRPRIRGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTN 236
           LADSRPRIRGRFARYND+V KNYP QW+               +C DNWIKYF+D YS N
Sbjct: 181 LADSRPRIRGRFARYNDEVVKNYPVQWN--LQREEEQQQREANSCGDNWIKYFIDTYSAN 240

[Close]

BLAST of Carg20259-RA vs. TrEMBL
Match: tr|A0A2N9E254|A0A2N9E254_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS858 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.8e-33
Identity = 92/172 (53.49%), Postives = 109/172 (63.37%), Query Frame = 0


Query: 69  SLLNPSLKTNGLLQQTGSSXXXXXXXXLSSDNVLHKLSLPAGDFQRNN-----QRAESPV 128
           S+ + SL  NG  Q   SS        + S++   +     GD QR N      R+ESP+
Sbjct: 96  SVSSHSLLKNGFRQFVSSS----THEFVDSESGPVRRVFSTGDLQRINMVQHGHRSESPL 155

Query: 129 SCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRKSLADSRPRIRGR 188
           S E+SI IE MSRACRYSPEEKKERI+RYRSKR QRNFNKKIKYACRK+LADSRPRIRGR
Sbjct: 156 SNENSIIIESMSRACRYSPEEKKERIERYRSKRTQRNFNKKIKYACRKTLADSRPRIRGR 215

Query: 189 FARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKYFVDAYSTNLIP 236
           FAR ND++ KN   QWSH                DDNWI  F+D +S N++P
Sbjct: 216 FAR-NDEIEKNPQVQWSH-------IGGEEDEEDDDNWIN-FIDTFSANMVP 254

[Close]

BLAST of Carg20259-RA vs. TrEMBL
Match: tr|A0A2R6QT85|A0A2R6QT85_ACTCH (Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14917 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 110 GDFQR-----NNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKK 169
           GD QR     +  R+ESP+S E+S  IEGMS+ACRYSPEEKKERI+RYRSKRNQRNFNKK
Sbjct: 128 GDLQRIKMVQDYHRSESPLSNENSSIIEGMSKACRYSPEEKKERIERYRSKRNQRNFNKK 187

Query: 170 IKYACRKSLADSRPRIRGRFARYNDDVAKNYPEQWSHGQXXXXXXXXXXXXNCDDNWIKY 229
           IKYACRK+LADSRPRIRGRFAR ND++ K+   QWSH                +DNWI  
Sbjct: 188 IKYACRKTLADSRPRIRGRFAR-NDEIEKSLENQWSH------TGGEEEYDEDEDNWIN- 247

Query: 230 FVDAYSTNLIP 236
           F+D++S NL+P
Sbjct: 248 FLDSFSANLVP 250

The following BLAST results are available for this feature:

BLAST of Carg20259-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946965.1	5.9e-114	94.89	zinc finger protein CONSTANS-LIKE 14-like [Cucurbita moschata]	[more]
XP_023532290.1	2.1e-111	96.17	two-component response regulator-like PRR1 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_023007329.1	1.3e-100	91.06	two-component response regulator-like PRR1 [Cucurbita maxima]	[more]
XP_022986933.1	3.9e-73	70.95	uncharacterized protein LOC111484524 isoform X1 [Cucurbita maxima]	[more]
XP_022944273.1	6.6e-73	71.78	uncharacterized protein LOC111448769 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg20259-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59990.1	6.4e-22	62.50	CCT motif family protein	[more]
AT1G63820.1	6.9e-16	59.49	CCT motif family protein	[more]
AT2G33350.1	9.9e-15	66.67	CCT motif family protein	[more]
AT3G12890.1	2.9e-14	62.50	activator of spomin::LUC2	[more]
AT5G41380.1	2.9e-14	53.57	CCT motif family protein	[more]

BLAST of Carg20259-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SK53\|COL3_ARATH	1.6e-06	52.83	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
sp\|Q940T9\|COL4_ARATH	1.6e-06	45.59	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
sp\|O50055\|COL1_ARATH	8.1e-06	51.02	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
sp\|Q9FHH8\|COL5_ARATH	1.8e-05	50.91	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]
sp\|O82117\|CO3_ORYSJ	3.1e-05	52.17	Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=...	[more]

BLAST of Carg20259-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KG14\|A0A0A0KG14_CUCSA	3.8e-69	70.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301610 PE=4 SV=1	[more]
tr\|A0A1S3CK56\|A0A1S3CK56_CUCME	4.2e-68	66.53	zinc finger protein CONSTANS-LIKE 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3CK62\|A0A1S3CK62_CUCME	4.2e-68	66.26	zinc finger protein CONSTANS-LIKE 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2N9E254\|A0A2N9E254_FAGSY	9.8e-33	53.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS858 PE=4 SV=1	[more]
tr\|A0A2R6QT85\|A0A2R6QT85_ACTCH	1.1e-31	61.83	Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR010402	CCT_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20259	Carg20259	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20259-RA	Carg20259-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20259-RA.exon.1	Carg20259-RA.exon.1	exon
Carg20259-RA.exon.2	Carg20259-RA.exon.2	exon
Carg20259-RA.exon.3	Carg20259-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20259-RA.CDS.1	Carg20259-RA.CDS.1	CDS
Carg20259-RA.CDS.2	Carg20259-RA.CDS.2	CDS
Carg20259-RA.CDS.3	Carg20259-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 146..186 e-value: 1.3E-17 score: 63.5
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 145..187 score: 15.567
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..216
None	No IPR available	PANTHER	PTHR31319:SF22	CCT MOTIF FAMILY PROTEIN	coord: 67..215
None	No IPR available	PANTHER	PTHR31319	FAMILY NOT NAMED	coord: 67..215