Carg19317 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19317
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Intron-encoded endonuclease
Location	Cucurbita_argyrosperma_scaffold_137 : 378003 .. 378921 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGCCGTGTTCTTGCCACTGATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCAGAGATGCGGTCGTTCTTCGTTGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGGTAAAAAATCAAACACCATTGCCATTATCTTCAAATAATAATCACAAATAAACATATCAACAACAATCATGATCCCTTACCTTGTTCATCTCTTGAAGTAGCGATAAATTTCCCAGTTCCAATTTGTTCTTACCGTATAAAAAGTCGTATTGTATTGATCATGAAATTAGACAATTTCATTGCCATTAATTGTTTGTTGAGAATTGTTTGTTGAGAATCTGTCTGTACTCTCACGAATCAAAATAATTTGAGAATATCAATAGAAAAACAAAAAGTTTGTATCATTTTGTTTCTAATTGCTTTGCCTCATCCATAAGAAAATAATATTCTCATCTTAATTTTACATGTAATTATAGTAACACATGGAGACTGGAGATATTGAACAGATTTGAGATCAAAATGATTAGAATAGGAACAAGATAATTATTATATTTAGTTATTTACTACTTTCTTTTTTCAAAAGATATGAATGATGAAATAAAGGTTAAAGCTTTTGGCGTTAACAGTTAACCCCATTGATGATTCTTTTAACTAGGATGGTTCCTTACGATCTGTTTAA

mRNA sequence

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGCCGTGTTCTTGCCACTGATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCAGAGATGCGGTCGTTCTTCGTTGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGGATGGTTCCTTACGATCTGTTTAA

Coding sequence (CDS)

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGCCGTGTTCTTGCCACTGATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCAGAGATGCGGTCGTTCTTCGTTGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGGATGGTTCCTTACGATCTGTTTAA

Protein sequence

MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPIPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKDGSLRSV

Homology

[Close]

BLAST of Carg19317 vs. NCBI nr
Match: XP_022925668.1 (uncharacterized protein LOC111433017 [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 5.5e-58
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 60
           MIIPIKPVAAM VFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

[Close]

BLAST of Carg19317 vs. NCBI nr
Match: XP_023543933.1 (uncharacterized protein LOC111803654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 11  MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPIPDTTLPLPK 70
           MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP+MRSFFVGTSSPIPDTTLPLPK
Sbjct: 1   MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDTTLPLPK 60

Query: 71  AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 61  AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 110

[Close]

BLAST of Carg19317 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 2   IIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAMAV+L  IVA+A+ALEIRPSEHGLEFQSPP AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKD 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+K 
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 122 GSLRSV 128
            + RS+
Sbjct: 121 KNQRSL 126

[Close]

BLAST of Carg19317 vs. NCBI nr
Match: XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 9.8e-47
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 2   IIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAMAV+L  IVA+ +ALEIRPSEHGLEFQSPP AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKD 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACG+TGVTLLVGSTL+YI+K 
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

Query: 122 GSLRSV 128
            + RS+
Sbjct: 121 KNQRSL 126

[Close]

BLAST of Carg19317 vs. NCBI nr
Match: XP_022926736.1 (uncharacterized protein LOC111433768 [Cucurbita moschata])

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 2   IIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAMAV+L  IVA+A+ALEIRPSEHGLEFQS P AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKD 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+K 
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 122 GSLRSV 128
            + RS+
Sbjct: 121 KNQRSL 126

[Close]

BLAST of Carg19317 vs. TAIR10
Match: AT4G21740.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 35/115 (30.43%), Postives = 50/115 (43.48%), Query Frame = 0


Query: 14  FLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP--EMRSF--FVGTSSPIPDTTLPLP 73
           FL +    + A E+RPS+HGL++Q   P  E  SP  +M+SF                  
Sbjct: 22  FLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFXXXXXXXXXXXXXXXXXX 81

Query: 74  KAMNSSEAPGWWTHRDGGNKR----VRNALLVATAACGITGVTLLVGSTLFYIYK 121
                         RDG   R    +R+  L A+  CG++GV LLV  TL Y ++
Sbjct: 82  XXXXXXXXXXXXXXRDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFR 136

[Close]

BLAST of Carg19317 vs. TrEMBL
Match: tr|A0A0A0KM65|A0A0A0KM65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 2   IIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +IPIK  AA+  F  LI ++A+  EIRPSEHGLEFQSPPP G+KSSPEMRSFF G +SP 
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKD 121
           P+  LP+PK +NSSE+PGWW H DGGNKR+RNALLVATAACGITGVTLLVGSTLFYI+K 
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFKA 120

Query: 122 GSLRSV 128
            + RS+
Sbjct: 121 KNKRSM 126

[Close]

BLAST of Carg19317 vs. TrEMBL
Match: tr|A0A1R3HUC9|A0A1R3HUC9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_26835 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-17
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 6   KPVAAMAVFLPLIVAV----ASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSS-P 65
           + + ++ V+LPLI  +    ++A E+RPS+HGLE+QS PP G K SPEMRSFF  +SS  
Sbjct: 10  RTMVSVVVYLPLITMIMIRESTARELRPSDHGLEYQSLPPTGLK-SPEMRSFFGASSSKS 69

Query: 66  IPDTTLPLPKAMNSSEA-PGWWTHRDG-GNKRVRNALLVATAACGITGVTLLVGSTLFYI 121
              +T+ LPKAMNS+E    WW+ R G G+  V+  LL+ +  CG+TGV LLV S   YI
Sbjct: 70  STPSTVALPKAMNSNETETPWWSSRHGRGSDHVKQVLLLGSLVCGVTGVALLVASAFIYI 129

[Close]

BLAST of Carg19317 vs. TrEMBL
Match: tr|A0A2C9UKP9|A0A2C9UKP9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G123400 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 7   PVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI-PDTT 66
           P+ A+ + +  IV  ++A E+RPS HGL++Q+ PPAGEK  PEM+ FF   SSP    + 
Sbjct: 6   PLVAIVIVI-TIVGDSTARELRPSYHGLDYQNTPPAGEKLPPEMKEFFGAQSSPTSKSSN 65

Query: 67  LPLPKAMNSSEAPGWWTHRDGGN------KRVRNALLVATAACGITGVTLLVGSTLFYIY 121
           + LPKAMNS++   WW    GGN       R+ + LLVA+ ACGITG  LLV S   Y  
Sbjct: 66  VALPKAMNSNDTT-WWRDVTGGNDGSKGRDRLSHVLLVASLACGITGAALLVASAFIYFV 124

[Close]

BLAST of Carg19317 vs. TrEMBL
Match: tr|I1KSM6|I1KSM6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102669680 PE=4 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 5.9e-16
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 10  AMAVFLPLIVA-VASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFF-VGTSSPIPDTT-- 69
           A+AVF+PLI A  +SA E+RPS+HGL FQ+  PAG  SSPEMRSFF    SSP   ++  
Sbjct: 6   AIAVFVPLIFAGASSARELRPSDHGLTFQTLSPAGPHSSPEMRSFFNSANSSPSMSSSSD 65

Query: 70  LPLPKAMNSSEA--PGWWTHRDGGN--KRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           + LP+AM+S EA  P WW   DGG+  + V  AL +A+  CG+ G  LLV S L Y+ K
Sbjct: 66  VALPRAMDSGEASPPAWW-QTDGGHSVEGVGKALTMASLGCGVAGAVLLVASGLIYLLK 123

[Close]

BLAST of Carg19317 vs. TrEMBL
Match: tr|A0A1R3KG28|A0A1R3KG28_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01741 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 17  LIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSS-PIPDTTLPLPKAMNSS 76
           +++  ++A E+RPS+HGLE+QS PP G K SPEMRSFF  +SS     +T+ LPKAMNS+
Sbjct: 2   IMIRESTARELRPSDHGLEYQSLPPTGLK-SPEMRSFFGASSSKSSTPSTVALPKAMNSN 61

Query: 77  EA-PGWWTHRDG-GNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           E    WW+ R G G+  V+  LL+ +  CG+TGV LLV S   YI +
Sbjct: 62  ETETPWWSGRHGRGSDHVKQVLLLGSLVCGVTGVALLVASAFIYIIR 107

The following BLAST results are available for this feature:

BLAST of Carg19317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925668.1	5.5e-58	99.17	uncharacterized protein LOC111433017 [Cucurbita moschata]	[more]
XP_023543933.1	1.8e-53	99.09	uncharacterized protein LOC111803654 [Cucurbita pepo subsp. pepo]	[more]
XP_023518243.1	1.2e-47	80.16	uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo]	[more]
XP_023003567.1	9.8e-47	78.57	uncharacterized protein LOC111497130 [Cucurbita maxima]	[more]
XP_022926736.1	1.7e-46	79.37	uncharacterized protein LOC111433768 [Cucurbita moschata]	[more]

BLAST of Carg19317 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21740.1	1.9e-04	30.43	unknown protein	[more]

BLAST of Carg19317 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19317 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KM65\|A0A0A0KM65_CUCSA	1.5e-43	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1	[more]
tr\|A0A1R3HUC9\|A0A1R3HUC9_9ROSI	5.3e-17	47.54	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_26835 PE=4 SV=1	[more]
tr\|A0A2C9UKP9\|A0A2C9UKP9_MANES	4.5e-16	46.28	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G123400 PE=4 SV=...	[more]
tr\|I1KSM6\|I1KSM6_SOYBN	5.9e-16	51.26	Uncharacterized protein OS=Glycine max OX=3847 GN=102669680 PE=4 SV=2	[more]
tr\|A0A1R3KG28\|A0A1R3KG28_COCAP	1.0e-15	49.53	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01741 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19317-RA	Carg19317-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37189	FAMILY NOT NAMED	coord: 10..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19317	Cla009829	Watermelon (97103) v1	carwmB0292
Carg19317	Cla019521	Watermelon (97103) v1	carwmB0291
Carg19317	Csa6G525480	Cucumber (Chinese Long) v2	carcuB0326
Carg19317	MELO3C007074	Melon (DHL92) v3.5.1	carmeB0301
Carg19317	ClCG03G006250	Watermelon (Charleston Gray)	carwcgB0293
Carg19317	ClCG01G025150	Watermelon (Charleston Gray)	carwcgB0292
Carg19317	CSPI06G36860	Wild cucumber (PI 183967)	carcpiB0332
Carg19317	Cucsa.048270	Cucumber (Gy14) v1	carcgyB0350
Carg19317	CmaCh13G004920	Cucurbita maxima (Rimu)	carcmaB0411
Carg19317	CmaCh07G000590	Cucurbita maxima (Rimu)	carcmaB0415
Carg19317	CmoCh07G000620	Cucurbita moschata (Rifu)	carcmoB0410
Carg19317	CmoCh18G004870	Cucurbita moschata (Rifu)	carcmoB0407
Carg19317	CmoCh03G014470	Cucurbita moschata (Rifu)	carcmoB0408
Carg19317	Lsi01G000810	Bottle gourd (USVL1VR-Ls)	carlsiB273
Carg19317	Lsi02G009440	Bottle gourd (USVL1VR-Ls)	carlsiB274
Carg19317	Cp4.1LG20g05630	Cucurbita pepo (Zucchini)	carcpeB0416
Carg19317	Cp4.1LG10g06470	Cucurbita pepo (Zucchini)	carcpeB0413
Carg19317	Cp4.1LG09g07260	Cucurbita pepo (Zucchini)	carcpeB0412
Carg19317	Cp4.1LG19g05600	Cucurbita pepo (Zucchini)	carcpeB0415
Carg19317	MELO3C007074.2	Melon (DHL92) v3.6.1	carmedB0312
Carg19317	CsaV3_6G052360	Cucumber (Chinese Long) v3	carcucB0332
Carg19317	Cla97C01G025190	Watermelon (97103) v2	carwmbB0307
Carg19317	Cla97C03G057540	Watermelon (97103) v2	carwmbB0309
Carg19317	Bhi03G000146	Wax gourd	carwgoB0385

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19317	Carg21398	Silver-seed gourd	carcarB326
Carg19317	Carg22577	Silver-seed gourd	carcarB327
Carg19317	Carg14963	Silver-seed gourd	carcarB328

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19317	Cucumber (Gy14) v2	carcgybB0312
Carg19317	Cucurbita maxima (Rimu)	carcmaB0412
Carg19317	Cucurbita maxima (Rimu)	carcmaB0413
Carg19317	Cucurbita moschata (Rifu)	carcmoB0406