Carg19223 (gene) Silver-seed gourd

NameCarg19223
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCTTNBP 2 amino-terminal-like protein
LocationCucurbita_argyrosperma_scaffold_099 : 335363 .. 337326 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTGACCAAAAATGGGAGGCGATAGCGCCGGCGCTGCCGGCCGTGTCACCGTTGAACCCAGAAAGAGATGAGTATTGGAGCCGTTTTGATGATTCGGTTAATGCCGTGTCATTTGGGTTTGTGGCTACTGCTATTCTCATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTCAGACCTAGATCGCCGGCGGCTATCGGCCGGCCGCCTTCTGATCTTGAAGCCCAGATGATGCTCGATGGAAAGCCTCGTTACCCATCTCCCAAGGTTTTTGTCTTCTCTTTTCTTCAACTTACCCTACATTTCGTTTGGTCTTTTTAGTTGTTTGTGCTTTGTTTTAGCTGGTTTTTAAGGCTTGATGGGTAGCCTTTGAATCTTATGAAATTTCATTATCTTCAAGAATAATGGCATAGCTTGTTGGCACTTAGTTCCTCTAGTGGGCTGCATTATTGGCCTATCTAATCACTGTTTTGTTGCATTTCACATCAAACCATGAAACCCTTTTGTTCTTAATCTTTAGAGGTTTAGATCAACGCCCTCCTTGATGCTGCTGATAATATCTGTTGGTTCATGGAAGTTTGTCGTGGCCTTGTGATTATCTTATGGTGTTACTACTCAGAATCATAGTTCTATCTCTTTTGGTGACAATTAATAATGTTTAGACTATTTTGAAACAGTTCTCTTCTGGAAATTTCTACATTACCCCTGTTTGATAACGTTAATACAATAGTCTTCTTCCTTCTAGATTTTAAGGATAAGGGTCCACAGCATGTAGGTAGCATGTGTTTTTGTCTCATCGTCAAAGCAATCCAAACCAGTATAGAATTTGATGGGAAAAACATGTTCATAAGGGCATTAAAATGTGGAAGCTGCTCTTCGTTTTTTAAGCATTAGTTGCTTGTGAAACTGTAGCAGATGGCATTTTAGAGAATAGATTATTCAAAGTCATCTCGATCCAACAAACTTAGTGGAGACGTTTCCACACTCTTATAAGGAATGTTTCGTTCCCTTCTCCAACCGGTGTGAGATCTTACAATCCGCCCCTTTTGGGAGCCTAGCGTCTTCGTTGGCATACCGCCTAAGCCCGCCACTAGCACATATTCTCTTTTTTAGACTTTCCCCTCAAGGCTTTAAAACGCGTCCGTTAAGAAGAGCTTTCCACACCCTTATAATAATGTTTCGTTCCCCTCTCCAACCAATGAAGGATCGATCTCACTCTTAGTCAACAAATCGATCCTACACCATTAAATGCATTGTTGATATCAAGCAAGATATAGCACAACTGTTCATAAACCTTAGGTGCAGTAGCAAGTTAATTACAAACATAATCACATGCTATGTTTCCCTTTCTGATTACAGTATAGTAATGTGCACATATTTTAAAGTATTTATAGCTTTATAAAGTGTCTCAAACTCTCTCATCTAGCACCATTTTCAATACTTTTCCTACATTCTATGAGGTATACTTATAGCATACAAGCATGTATTCAAAGATTTGAGCGATACTTTCAGCTTTATTGTGTTGGAAAATATAGTAACAGAGTAGAAGGGTATTGAAATAGGAGGCCCTGGGATCAATCTGAATCTACTCCCACTAGTTTGTGTTCTATTCTTGCATCTCAAGGATGATAAAGTTGTCCTCCTTTTTGCTCATAGGACAGCTATTTTCAACTGAAAATCAGAATAGTTATGATTATTATGAGTTATCTTTGTTGTTTGAGGACATTTGCTTTTAGTGACCATCATGTTTGATCATGTGGCTGTTTTTTCTCTTATTAAGGGGGGGAAAGGCAAAAGAAAAAGGGGGAAAAGGTTCAGACAAGCATTAATGTTCTATTGGAGTGAGGTTTTGATTCATCTGTTTTTTAAGTAAATTTATAATTCTGTACTGTTTTCAACAGTGGCTGTACAGTGCTCAAGCCATTAATATACCTATCTCTCTCTCTCTCTGA

mRNA sequence

ATGGGCAGTGACCAAAAATGGGAGGCGATAGCGCCGGCGCTGCCGGCCGTGTCACCGTTGAACCCAGAAAGAGATGAGTATTGGAGCCGTTTTGATGATTCGGTTAATGCCGTGTCATTTGGGTTTGTGGCTACTGCTATTCTCATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTCAGACCTAGATCGCCGGCGGCTATCGGCCGGCCGCCTTCTGATCTTGAAGCCCAGATGATGCTCGATGGAAAGCCTCGTTACCCATCTCCCAAGATCAACGCCCTCCTTGATGCTGCTGATAATATCTGTTGGTTCATGGAAGTTTGTCGTGGCCTTTGGCTGTACAGTGCTCAAGCCATTAATATACCTATCTCTCTCTCTCTCTGA

Coding sequence (CDS)

ATGGGCAGTGACCAAAAATGGGAGGCGATAGCGCCGGCGCTGCCGGCCGTGTCACCGTTGAACCCAGAAAGAGATGAGTATTGGAGCCGTTTTGATGATTCGGTTAATGCCGTGTCATTTGGGTTTGTGGCTACTGCTATTCTCATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTCAGACCTAGATCGCCGGCGGCTATCGGCCGGCCGCCTTCTGATCTTGAAGCCCAGATGATGCTCGATGGAAAGCCTCGTTACCCATCTCCCAAGATCAACGCCCTCCTTGATGCTGCTGATAATATCTGTTGGTTCATGGAAGTTTGTCGTGGCCTTTGGCTGTACAGTGCTCAAGCCATTAATATACCTATCTCTCTCTCTCTCTGA

Protein sequence

MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKINALLDAADNICWFMEVCRGLWLYSAQAINIPISLSL
BLAST of Carg19223 vs. NCBI nr
Match: XP_022969287.1 (uncharacterized protein LOC111468338 isoform X2 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 5.7e-50
Identity = 108/130 (83.08%), Postives = 108/130 (83.08%), Query Frame = 0

Query: 1   MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
           MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1   MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61  FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKINALLDAADNICWFMEVCRGLWLYSAQ 120
           FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK                     WL SAQ
Sbjct: 61  FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK---------------------WLNSAQ 109

Query: 121 AINIPISLSL 131
           AINIPISLSL
Sbjct: 121 AINIPISLSL 109

BLAST of Carg19223 vs. NCBI nr
Match: XP_022969286.1 (uncharacterized protein LOC111468338 isoform X1 [Cucurbita maxima])

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKI 95
          FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK+
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKM 94

BLAST of Carg19223 vs. NCBI nr
Match: XP_023554632.1 (uncharacterized protein LOC111811824 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKI 95
          FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK+
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKM 94

BLAST of Carg19223 vs. NCBI nr
Match: XP_022969288.1 (uncharacterized protein LOC111468338 isoform X3 [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK 94
          FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK 93

BLAST of Carg19223 vs. NCBI nr
Match: XP_023554633.1 (uncharacterized protein LOC111811824 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK 94
          FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPK 93

BLAST of Carg19223 vs. TAIR10
Match: AT1G11120.1 (unknown protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 15 PAVSPLNPERDEYW-SRFDDSVNAVSFGFVATAILISMFLVMAIFERFLR 64
          P  +P+N  R+E W S+FDDSVNAVSFGFVATAILISMFLVMAIFER +R
Sbjct: 17 PIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIR 66

BLAST of Carg19223 vs. TAIR10
Match: AT1G09812.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 18 SPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRS 67
          SP   + +  W R   S+NA+SFGFVATAILISMFL+MAIFE   RP +
Sbjct: 11 SPREGDSEGPW-RSSTSMNAISFGFVATAILISMFLIMAIFEHLFRPEN 58

BLAST of Carg19223 vs. TAIR10
Match: AT4G28170.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 25  DEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRSPAAIGRPPSDLEAQMMLD 84
           +E   RF+ SVNAV FG VAT +LI++FL++A FERF+  +   +   PP D +      
Sbjct: 51  EEGQGRFESSVNAVPFGLVATGVLIAIFLLIAFFERFMFVKPTPS---PPLDQKF----- 110

Query: 85  GKPRYPSPKIN 96
             P + SPK++
Sbjct: 111 --PPFASPKMD 111

BLAST of Carg19223 vs. TAIR10
Match: AT1G58007.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 8.8e-05
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 34 SVNAVSFGFVATAILISMFLVMAIFERFLR 64
          S+NA+SFGFVATAILI MF++MAI E   R
Sbjct: 22 SMNAISFGFVATAILILMFIIMAILEHLFR 51

BLAST of Carg19223 vs. TrEMBL
Match: tr|A0A0A0K2A7|A0A0A0K2A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047290 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0

Query: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MG +QKW AIAPALPAVSPLNPER+EYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGEQKWGAIAPALPAVSPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKI 95
          FLRPRSPAAIGRPPSDLEAQM+ DGKPRYPSPK+
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMVFDGKPRYPSPKM 94

BLAST of Carg19223 vs. TrEMBL
Match: tr|A0A061E3Z4|A0A061E3Z4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007987 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 1  MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MG+   W+ +    P V+PLN ER+E+W RFD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGAQDYWDTVP---PTVAPLNLEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKI 95
          FLRPRS ++  R  +DLE+Q   +GK  YPSPK+
Sbjct: 61 FLRPRSLSSNARNRTDLESQTTFNGKLDYPSPKM 91

BLAST of Carg19223 vs. TrEMBL
Match: tr|V4U3R6|V4U3R6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017068mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0

Query: 2  GSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERF 61
          G D     +AP  P ++PLN ER+E+W RFD+SVNAVSFGFVATAILISMFLVMAIFERF
Sbjct: 6  GEDHSSWLMAP--PPMAPLNMEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFERF 65

Query: 62 LRPRSPAAIG-RPPSDLEAQMMLDGKPRYPSPKI 95
          LRPRS    G    SDLEAQMM +GK  YPSPK+
Sbjct: 66 LRPRSSMPPGPSSASDLEAQMMFNGKLNYPSPKM 97

BLAST of Carg19223 vs. TrEMBL
Match: tr|A0A2H5PTK3|A0A2H5PTK3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_166240 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0

Query: 2  GSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERF 61
          G D     +AP  P ++PLN ER+E+W RFD+SVNAVSFGFVATAILISMFLVMAIFERF
Sbjct: 6  GEDHSSWLMAP--PPMAPLNMEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFERF 65

Query: 62 LRPRSPAAIG-RPPSDLEAQMMLDGKPRYPSPKI 95
          LRPRS    G    SDLEAQMM +GK  YPSPK+
Sbjct: 66 LRPRSSMPPGPSSASDLEAQMMFNGKLNYPSPKM 97

BLAST of Carg19223 vs. TrEMBL
Match: tr|A0A067E6G0|A0A067E6G0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041962mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0

Query: 2  GSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERF 61
          G D     +AP  P ++PLN ER+E+W RFD+SVNAVSFGFVATAILISMFLVMAIFERF
Sbjct: 3  GEDHSSWLMAP--PPMAPLNMEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFERF 62

Query: 62 LRPRSPAAIG-RPPSDLEAQMMLDGKPRYPSPKI 95
          LRPRS    G    SDLEAQMM +GK  YPSPK+
Sbjct: 63 LRPRSSMPPGPSSASDLEAQMMFNGKLNYPSPKM 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022969287.15.7e-5083.08uncharacterized protein LOC111468338 isoform X2 [Cucurbita maxima][more]
XP_022969286.11.4e-4598.94uncharacterized protein LOC111468338 isoform X1 [Cucurbita maxima][more]
XP_023554632.11.4e-4598.94uncharacterized protein LOC111811824 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022969288.11.9e-45100.00uncharacterized protein LOC111468338 isoform X3 [Cucurbita maxima][more]
XP_023554633.11.9e-45100.00uncharacterized protein LOC111811824 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT1G11120.11.8e-1376.00unknown protein[more]
AT1G09812.12.9e-0859.18unknown protein[more]
AT4G28170.12.7e-0640.85unknown protein[more]
AT1G58007.18.8e-0570.00unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K2A7|A0A0A0K2A7_CUCSA1.3e-4292.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047290 PE=4 SV=1[more]
tr|A0A061E3Z4|A0A061E3Z4_THECC1.0e-2363.83Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007987 PE=4 SV=1[more]
tr|V4U3R6|V4U3R6_9ROSI2.3e-2368.09Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017068mg PE=4 ... [more]
tr|A0A2H5PTK3|A0A2H5PTK3_CITUN2.3e-2368.09Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_166240 PE=4 SV=1[more]
tr|A0A067E6G0|A0A067E6G0_CITSI2.3e-2368.09Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041962mg PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19223-RACarg19223-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33728FAMILY NOT NAMEDcoord: 5..95
NoneNo IPR availablePANTHERPTHR33728:SF1SUBFAMILY NOT NAMEDcoord: 5..95

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19223Carg14648Silver-seed gourdcarcarB178
Carg19223Carg19108Silver-seed gourdcarcarB590