Carg19223-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAGTGACCAAAAATGGGAGGCGATAGCGCCGGCGCTGCCGGCCGTGTCACCGTTGAACCCAGAAAGAGATGAGTATTGGAGCCGTTTTGATGATTCGGTTAATGCCGTGTCATTTGGGTTTGTGGCTACTGCTATTCTCATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTCAGACCTAGATCGCCGGCGGCTATCGGCCGGCCGCCTTCTGATCTTGAAGCCCAGATGATGCTCGATGGAAAGCCTCGTTACCCATCTCCCAAGGTTTTTGTCTTCTCTTTTCTTCAACTTACCCTACATTTCGTTTGGTCTTTTTAGTTGTTTGTGCTTTGTTTTAGCTGGTTTTTAAGGCTTGATGGGTAGCCTTTGAATCTTATGAAATTTCATTATCTTCAAGAATAATGGCATAGCTTGTTGGCACTTAGTTCCTCTAGTGGGCTGCATTATTGGCCTATCTAATCACTGTTTTGTTGCATTTCACATCAAACCATGAAACCCTTTTGTTCTTAATCTTTAGAGGTTTAGATCAACGCCCTCCTTGATGCTGCTGATAATATCTGTTGGTTCATGGAAGTTTGTCGTGGCCTTGTGATTATCTTATGGTGTTACTACTCAGAATCATAGTTCTATCTCTTTTGGTGACAATTAATAATGTTTAGACTATTTTGAAACAGTTCTCTTCTGGAAATTTCTACATTACCCCTGTTTGATAACGTTAATACAATAGTCTTCTTCCTTCTAGATTTTAAGGATAAGGGTCCACAGCATGTAGGTAGCATGTGTTTTTGTCTCATCGTCAAAGCAATCCAAACCAGTATAGAATTTGATGGGAAAAACATGTTCATAAGGGCATTAAAATGTGGAAGCTGCTCTTCGTTTTTTAAGCATTAGTTGCTTGTGAAACTGTAGCAGATGGCATTTTAGAGAATAGATTATTCAAAGTCATCTCGATCCAACAAACTTAGTGGAGACGTTTCCACACTCTTATAAGGAATGTTTCGTTCCCTTCTCCAACCGGTGTGAGATCTTACAATCCGCCCCTTTTGGGAGCCTAGCGTCTTCGTTGGCATACCGCCTAAGCCCGCCACTAGCACATATTCTCTTTTTTAGACTTTCCCCTCAAGGCTTTAAAACGCGTCCGTTAAGAAGAGCTTTCCACACCCTTATAATAATGTTTCGTTCCCCTCTCCAACCAATGAAGGATCGATCTCACTCTTAGTCAACAAATCGATCCTACACCATTAAATGCATTGTTGATATCAAGCAAGATATAGCACAACTGTTCATAAACCTTAGGTGCAGTAGCAAGTTAATTACAAACATAATCACATGCTATGTTTCCCTTTCTGATTACAGTATAGTAATGTGCACATATTTTAAAGTATTTATAGCTTTATAAAGTGTCTCAAACTCTCTCATCTAGCACCATTTTCAATACTTTTCCTACATTCTATGAGGTATACTTATAGCATACAAGCATGTATTCAAAGATTTGAGCGATACTTTCAGCTTTATTGTGTTGGAAAATATAGTAACAGAGTAGAAGGGTATTGAAATAGGAGGCCCTGGGATCAATCTGAATCTACTCCCACTAGTTTGTGTTCTATTCTTGCATCTCAAGGATGATAAAGTTGTCCTCCTTTTTGCTCATAGGACAGCTATTTTCAACTGAAAATCAGAATAGTTATGATTATTATGAGTTATCTTTGTTGTTTGAGGACATTTGCTTTTAGTGACCATCATGTTTGATCATGTGGCTGTTTTTTCTCTTATTAAGGGGGGGAAAGGCAAAAGAAAAAGGGGGAAAAGGTTCAGACAAGCATTAATGTTCTATTGGAGTGAGGTTTTGATTCATCTGTTTTTTAAGTAAATTTATAATTCTGTACTGTTTTCAACAGTGGCTGTACAGTGCTCAAGCCATTAATATACCTATCTCTCTCTCTCTCTGA ATGGGCAGTGACCAAAAATGGGAGGCGATAGCGCCGGCGCTGCCGGCCGTGTCACCGTTGAACCCAGAAAGAGATGAGTATTGGAGCCGTTTTGATGATTCGGTTAATGCCGTGTCATTTGGGTTTGTGGCTACTGCTATTCTCATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTCAGACCTAGATCGCCGGCGGCTATCGGCCGGCCGCCTTCTGATCTTGAAGCCCAGATGATGCTCGATGGAAAGCCTCGTTACCCATCTCCCAAGATCAACGCCCTCCTTGATGCTGCTGATAATATCTGTTGGTTCATGGAAGTTTGTCGTGGCCTTTGGCTGTACAGTGCTCAAGCCATTAATATACCTATCTCTCTCTCTCTCTGA ATGGGCAGTGACCAAAAATGGGAGGCGATAGCGCCGGCGCTGCCGGCCGTGTCACCGTTGAACCCAGAAAGAGATGAGTATTGGAGCCGTTTTGATGATTCGGTTAATGCCGTGTCATTTGGGTTTGTGGCTACTGCTATTCTCATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTCAGACCTAGATCGCCGGCGGCTATCGGCCGGCCGCCTTCTGATCTTGAAGCCCAGATGATGCTCGATGGAAAGCCTCGTTACCCATCTCCCAAGATCAACGCCCTCCTTGATGCTGCTGATAATATCTGTTGGTTCATGGAAGTTTGTCGTGGCCTTTGGCTGTACAGTGCTCAAGCCATTAATATACCTATCTCTCTCTCTCTCTGA MGSDQKWEAIAPALPAVSPLNPERDEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRSPAAIGRPPSDLEAQMMLDGKPRYPSPKINALLDAADNICWFMEVCRGLWLYSAQAINIPISLSL
BLAST of Carg19223-RA vs. NCBI nr
Match: XP_022969287.1 (uncharacterized protein LOC111468338 isoform X2 [Cucurbita maxima]) HSP 1 Score: 206.5 bits (524), Expect = 5.7e-50 Identity = 108/130 (83.08%), Postives = 108/130 (83.08%), Query Frame = 0
BLAST of Carg19223-RA vs. NCBI nr
Match: XP_022969286.1 (uncharacterized protein LOC111468338 isoform X1 [Cucurbita maxima]) HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45 Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
BLAST of Carg19223-RA vs. NCBI nr
Match: XP_023554632.1 (uncharacterized protein LOC111811824 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45 Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0
BLAST of Carg19223-RA vs. NCBI nr
Match: XP_022969288.1 (uncharacterized protein LOC111468338 isoform X3 [Cucurbita maxima]) HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg19223-RA vs. NCBI nr
Match: XP_023554633.1 (uncharacterized protein LOC111811824 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg19223-RA vs. TAIR10
Match: AT1G11120.1 (unknown protein) HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13 Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0
BLAST of Carg19223-RA vs. TAIR10
Match: AT1G09812.1 (unknown protein) HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08 Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of Carg19223-RA vs. TAIR10
Match: AT4G28170.1 (unknown protein) HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0
BLAST of Carg19223-RA vs. TAIR10
Match: AT1G58007.1 (unknown protein) HSP 1 Score: 43.9 bits (102), Expect = 8.8e-05 Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0
BLAST of Carg19223-RA vs. TrEMBL
Match: tr|A0A0A0K2A7|A0A0A0K2A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047290 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42 Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0
BLAST of Carg19223-RA vs. TrEMBL
Match: tr|A0A061E3Z4|A0A061E3Z4_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007987 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23 Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 0
BLAST of Carg19223-RA vs. TrEMBL
Match: tr|V4U3R6|V4U3R6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017068mg PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23 Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0
BLAST of Carg19223-RA vs. TrEMBL
Match: tr|A0A2H5PTK3|A0A2H5PTK3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_166240 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23 Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0
BLAST of Carg19223-RA vs. TrEMBL
Match: tr|A0A067E6G0|A0A067E6G0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041962mg PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23 Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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