Cp4.1LG04g03290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane protein, putative
LocationCp4.1LG04 : 7375787 .. 7376119 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGCGAGCAAGAATGGGGCGACATAGCGCCGCCACTGCCGGCGGTGTTGCCGTTAAACCCAGAAAGAGAGGAGTATTGGAGTCGATTTGATGATTCTGTTAATGCGGTTTCGTTTGGGTTTGTAGCGACTGCCATTCTAATCTCTATGTTCCTTGTTATGGCTATTTTTGAGAGGTTTCTTAGACCCAGGACGGCGGCGGACATCGGCCGGCCGCCTTCTGATCTTGAAGCACAGATGGTGTTCGATGAAAAGCTTCGTTACCCATCTCCCAAGGTTCTTGTCTTCTCTTCTCTGCTACTGCATTTTGATGTTGGCTTCGTTTTCTAA

mRNA sequence

ATGGGCGGCGAGCAAGAATGGGGCGACATAGCGCCGCCACTGCCGGCGGTGTTGCCGTTAAACCCAGAAAGAGAGGAGTATTGGAGTCGATTTGATGATTCTGTTAATGCGGTTTCGTTTGGGTTTGTAGCGACTGCCATTCTAATCTCTATGTTCCTTGTTATGGCTATTTTTGAGAGGTTTCTTAGACCCAGGACGGCGGCGGACATCGGCCGGCCGCCTTCTGATCTTGAAGCACAGATGGTGTTCGATGAAAAGCTTCGTTACCCATCTCCCAAGGTTCTTGTCTTCTCTTCTCTGCTACTGCATTTTGATGTTGGCTTCGTTTTCTAA

Coding sequence (CDS)

ATGGGCGGCGAGCAAGAATGGGGCGACATAGCGCCGCCACTGCCGGCGGTGTTGCCGTTAAACCCAGAAAGAGAGGAGTATTGGAGTCGATTTGATGATTCTGTTAATGCGGTTTCGTTTGGGTTTGTAGCGACTGCCATTCTAATCTCTATGTTCCTTGTTATGGCTATTTTTGAGAGGTTTCTTAGACCCAGGACGGCGGCGGACATCGGCCGGCCGCCTTCTGATCTTGAAGCACAGATGGTGTTCGATGAAAAGCTTCGTTACCCATCTCCCAAGGTTCTTGTCTTCTCTTCTCTGCTACTGCATTTTGATGTTGGCTTCGTTTTCTAA

Protein sequence

MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFSSLLLHFDVGFVF
Homology
[Close]
BLAST of Cp4.1LG04g03290 vs. TrEMBL
Match: A0A0A0K2A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047290 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.5e-41
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 1 

Query: 1  MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGGEQ+WG IAP LPAV PLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGEQKWGAIAPALPAVSPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFS 99
          FLRPR+ A IGRPPSDLEAQMVFD K RYPSPK+ V++
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMVFDGKPRYPSPKMTVYA 98

[Close]
BLAST of Cp4.1LG04g03290 vs. TrEMBL
Match: A5AET9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034449 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-26
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 

Query: 1  MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGGE  WG ++P + AV  +N EREE+W  FD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGES-WGMVSPTV-AVAAVNVEREEHWKHFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFS 99
          FLRPR++    R   D EA M+FD KLRYPSPK+ V++
Sbjct: 61 FLRPRSSPSGSRTHGDPEAPMMFDGKLRYPSPKMTVYA 96

[Close]
BLAST of Cp4.1LG04g03290 vs. TrEMBL
Match: F6HIH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01900 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-26
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 

Query: 1  MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGGE  WG ++P + AV  +N EREE+W  FD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGES-WGMVSPTV-AVAAVNVEREEHWKHFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFS 99
          FLRPR++    R   D EA M+FD KLRYPSPK+ V++
Sbjct: 61 FLRPRSSPSGSRTHGDPEAPMMFDGKLRYPSPKMTVYA 96

[Close]
BLAST of Cp4.1LG04g03290 vs. TrEMBL
Match: A0A0D2TWX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G074600 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.6e-26
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1   MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
           MGGE  W +  PP   V PL+ EREE+W RFD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1   MGGEYFW-ETVPPTATVDPLSLEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61  FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFSS 100
           FLRP   +D    P+DLE+  +F+ KL YPSPK+ V++S
Sbjct: 61  FLRP--TSDTSTTPNDLESHNIFNAKLNYPSPKMTVYAS 96

[Close]
BLAST of Cp4.1LG04g03290 vs. TrEMBL
Match: A0A061E3Z4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007987 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.6e-26
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 

Query: 3   GEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFL 62
           G Q++ D  PP   V PLN EREE+W RFD+SVNAVSFGFVATAILISMFLVMAIFERFL
Sbjct: 2   GAQDYWDTVPP--TVAPLNLEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFERFL 61

Query: 63  RPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFSS 100
           RPR+ +   R  +DLE+Q  F+ KL YPSPK+ ++++
Sbjct: 62  RPRSLSSNARNRTDLESQTTFNGKLDYPSPKMTIYAN 96

[Close]
BLAST of Cp4.1LG04g03290 vs. TAIR10
Match: AT1G11120.1 (AT1G11120.1 unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-15
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1 

Query: 12  PPLPAVLPLNPEREEYW-SRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRTAADI 71
           PP+ A  P+N  REE W S+FDDSVNAVSFGFVATAILISMFLVMAIFER +R  T +  
Sbjct: 16  PPIGA--PMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTT 75

Query: 72  GRPPSD------LEAQMVFD---EKLRYPSPKV----LVFS 99
               S       +++++ F+    KL Y SPK     +VFS
Sbjct: 76  NSDSSSSRVLPGMDSRVGFNGAATKLGYQSPKASNNRIVFS 114

[Close]
BLAST of Cp4.1LG04g03290 vs. TAIR10
Match: AT1G09812.1 (AT1G09812.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 19 PLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRTAA 69
          P   + E  W R   S+NA+SFGFVATAILISMFL+MAIFE   RP  ++
Sbjct: 12 PREGDSEGPW-RSSTSMNAISFGFVATAILISMFLIMAIFEHLFRPENSS 60

[Close]
BLAST of Cp4.1LG04g03290 vs. TAIR10
Match: AT4G28170.1 (AT4G28170.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 

Query: 25 EEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFL 63
          EE   RF+ SVNAV FG VAT +LI++FL++A FERF+
Sbjct: 51 EEGQGRFESSVNAVPFGLVATGVLIAIFLLIAFFERFM 88

[Close]
BLAST of Cp4.1LG04g03290 vs. NCBI nr
Match: gi|449438476|ref|XP_004137014.1| (PREDICTED: uncharacterized protein LOC101213979 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 7.9e-41
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 1 

Query: 1  MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGGEQ+WG IAP LPAV PLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGEQKWGAIAPALPAVSPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFS 99
          FLRPR+ A IGRPPSDLEAQMVFD K RYPSPK+ V++
Sbjct: 61 FLRPRSPAAIGRPPSDLEAQMVFDGKPRYPSPKMTVYA 98

[Close]
BLAST of Cp4.1LG04g03290 vs. NCBI nr
Match: gi|147809646|emb|CAN77872.1| (hypothetical protein VITISV_034449 [Vitis vinifera])

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 

Query: 1  MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGGE  WG ++P + AV  +N EREE+W  FD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGES-WGMVSPTV-AVAAVNVEREEHWKHFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFS 99
          FLRPR++    R   D EA M+FD KLRYPSPK+ V++
Sbjct: 61 FLRPRSSPSGSRTHGDPEAPMMFDGKLRYPSPKMTVYA 96

[Close]
BLAST of Cp4.1LG04g03290 vs. NCBI nr
Match: gi|225447235|ref|XP_002278171.1| (PREDICTED: uncharacterized protein LOC100253450 [Vitis vinifera])

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-26
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 

Query: 1  MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
          MGGE  WG ++P + AV  +N EREE+W  FD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1  MGGES-WGMVSPTV-AVAAVNVEREEHWKHFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61 FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFS 99
          FLRPR++    R   D EA M+FD KLRYPSPK+ V++
Sbjct: 61 FLRPRSSPSGSRTHGDPEAPMMFDGKLRYPSPKMTVYA 96

[Close]
BLAST of Cp4.1LG04g03290 vs. NCBI nr
Match: gi|823258776|ref|XP_012462085.1| (PREDICTED: uncharacterized protein LOC105782121 isoform X1 [Gossypium raimondii])

HSP 1 Score: 124.8 bits (312), Expect = 9.4e-26
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1   MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFER 60
           MGGE  W +  PP   V PL+ EREE+W RFD+SVNAVSFGFVATAILISMFLVMAIFER
Sbjct: 1   MGGEYFW-ETVPPTATVDPLSLEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFER 60

Query: 61  FLRPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFSS 100
           FLRP   +D    P+DLE+  +F+ KL YPSPK+ V++S
Sbjct: 61  FLRP--TSDTSTTPNDLESHNIFNAKLNYPSPKMTVYAS 96

[Close]
BLAST of Cp4.1LG04g03290 vs. NCBI nr
Match: gi|590690506|ref|XP_007043526.1| (Uncharacterized protein TCM_007987 [Theobroma cacao])

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 

Query: 3   GEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFL 62
           G Q++ D  PP   V PLN EREE+W RFD+SVNAVSFGFVATAILISMFLVMAIFERFL
Sbjct: 2   GAQDYWDTVPP--TVAPLNLEREEHWRRFDNSVNAVSFGFVATAILISMFLVMAIFERFL 61

Query: 63  RPRTAADIGRPPSDLEAQMVFDEKLRYPSPKVLVFSS 100
           RPR+ +   R  +DLE+Q  F+ KL YPSPK+ ++++
Sbjct: 62  RPRSLSSNARNRTDLESQTTFNGKLDYPSPKMTIYAN 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2A7_CUCSA5.5e-4186.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G047290 PE=4 SV=1[more]
A5AET9_VITVI3.8e-2666.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034449 PE=4 SV=1[more]
F6HIH2_VITVI3.8e-2666.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01900 PE=4 SV=... [more]
A0A0D2TWX8_GOSRA6.6e-2664.65Uncharacterized protein OS=Gossypium raimondii GN=B456_013G074600 PE=4 SV=1[more]
A0A061E3Z4_THECC8.6e-2663.92Uncharacterized protein OS=Theobroma cacao GN=TCM_007987 PE=4 SV=1[more]
BLAST of Cp4.1LG04g03290 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11120.11.2e-1552.48 unknown protein[more]
AT1G09812.11.9e-0858.00 unknown protein[more]
AT4G28170.12.3e-0660.53 unknown protein[more]
BLAST of Cp4.1LG04g03290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438476|ref|XP_004137014.1|7.9e-4186.73PREDICTED: uncharacterized protein LOC101213979 [Cucumis sativus][more]
gi|147809646|emb|CAN77872.1|5.5e-2666.33hypothetical protein VITISV_034449 [Vitis vinifera][more]
gi|225447235|ref|XP_002278171.1|5.5e-2666.33PREDICTED: uncharacterized protein LOC100253450 [Vitis vinifera][more]
gi|823258776|ref|XP_012462085.1|9.4e-2664.65PREDICTED: uncharacterized protein LOC105782121 isoform X1 [Gossypium raimondii][more]
gi|590690506|ref|XP_007043526.1|1.2e-2563.92Uncharacterized protein TCM_007987 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03290.1Cp4.1LG04g03290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33728FAMILY NOT NAMEDcoord: 1..99
score: 2.3
NoneNo IPR availablePANTHERPTHR33728:SF1SUBFAMILY NOT NAMEDcoord: 1..99
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03290Cucsa.147860Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03290Cucsa.126400Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g03290CmaCh11G018640Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03290CmaCh18G003500Cucurbita maxima (Rimu)cmacpeB451
Cp4.1LG04g03290CmaCh19G009750Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03290CmoCh18G003280Cucurbita moschata (Rifu)cmocpeB412
Cp4.1LG04g03290CmoCh11G019410Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03290Cla007736Watermelon (97103) v1cpewmB666
Cp4.1LG04g03290Csa7G047290Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03290MELO3C018754Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03290ClCG02G001210Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03290CSPI07G04420Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03290Lsi11G015290Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03290MELO3C018754.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03290CsaV3_7G004240Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03290Bhi05G001587Wax gourdcpewgoB0844
Cp4.1LG04g03290CsGy7G004030Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03290Carg19108Silver-seed gourdcarcpeB1015
Cp4.1LG04g03290Carg19223Silver-seed gourdcarcpeB1223
Cp4.1LG04g03290Carg14648Silver-seed gourdcarcpeB0217
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g03290Cp4.1LG09g08550Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG04g03290Cp4.1LG15g07970Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03290Wax gourdcpewgoB0865
Cp4.1LG04g03290Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g03290Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03290Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03290Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03290Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g03290Bottle gourd (USVL1VR-Ls)cpelsiB521
Cp4.1LG04g03290Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g03290Watermelon (97103) v1cpewmB668
Cp4.1LG04g03290Melon (DHL92) v3.6.1cpemedB773
Cp4.1LG04g03290Silver-seed gourdcarcpeB0047
Cp4.1LG04g03290Cucumber (Chinese Long) v3cpecucB0855