Carg19030 (gene) Silver-seed gourd

NameCarg19030
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsarcoplasmic reticulum histidine-rich calcium-binding protein
LocationCucurbita_argyrosperma_scaffold_115 : 298383 .. 299192 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACCAAGAAATTCTTCCAATTGGTTGAGGAGAAGAAGAAGAGAGCTTTGGAGAAGAAGGAAGCTCCATTGAAATGGGAACAAAAACTTGAAGCTGCTGCCAAGGCAAAGGCTGATCATGAGGGAGGCCGGAGAGCAGGTAAGAGAATTCATAAGAAGCACAGGAAACATAGCCACTCTGATTCAGGTGACTATGAGAAGATGAAGGATAGAAAATCCAAGAGAAAACCAAAACGTCGTCGCTCGTCTAATGATGTCAGCAGTGATGAATTTGGTGACCACTCTGAAGAAGATAGGAGGAAGAAGAGAAACCATAGAAGACATATTCATGATGATTCAAGTTCCGATGAAAGTTACTCCGGTTCTTCTAACGATGATATTGAGACAACTAAAAGAAGTCACTCCCGGCGTCACAAACATCATAGGCGACCTAACTATTCATCATCTGACGATTCTAGCAGTGAGGATGATACTAGTTTGCGAAGGAAAAGGCATGTGAGGCACCACAGGCCCCACCATCGACACGGGCAATCCCATCGATCGTGTAGTATCGATTCTTTAGATTGTAATTATGGCAGGCATGAGGCTAGAAGCCAGTCTTCAGGGAAGTCATCTGATGATAATCATGAAGAAGAATCAGCACTACAATCTCGGCACAAGAGAGAGAATCACCATCACAAACATCGGCACCACCATCATTCAGGTGAGAACAAGCATTCATTCAATGGGTCGACCGAGATCAATGAAAAATATAACGACGATGACCCTGATGGAAACAACCACGATCGTTCCAAGAATCCTCATTAA

mRNA sequence

ATGGACACCAAGAAATTCTTCCAATTGGTTGAGGAGAAGAAGAAGAGAGCTTTGGAGAAGAAGGAAGCTCCATTGAAATGGGAACAAAAACTTGAAGCTGCTGCCAAGGCAAAGGCTGATCATGAGGGAGGCCGGAGAGCAGGTAAGAGAATTCATAAGAAGCACAGGAAACATAGCCACTCTGATTCAGGTGACTATGAGAAGATGAAGGATAGAAAATCCAAGAGAAAACCAAAACGTCGTCGCTCGTCTAATGATGTCAGCAGTGATGAATTTGGTGACCACTCTGAAGAAGATAGGAGGAAGAAGAGAAACCATAGAAGACATATTCATGATGATTCAAGTTCCGATGAAAGTTACTCCGGTTCTTCTAACGATGATATTGAGACAACTAAAAGAAGTCACTCCCGGCGTCACAAACATCATAGGCGACCTAACTATTCATCATCTGACGATTCTAGCAGTGAGGATGATACTAGTTTGCGAAGGAAAAGGCATGTGAGGCACCACAGGCCCCACCATCGACACGGGCAATCCCATCGATCGTGTAGTATCGATTCTTTAGATTGTAATTATGGCAGGCATGAGGCTAGAAGCCAGTCTTCAGGGAAGTCATCTGATGATAATCATGAAGAAGAATCAGCACTACAATCTCGGCACAAGAGAGAGAATCACCATCACAAACATCGGCACCACCATCATTCAGGTGAGAACAAGCATTCATTCAATGGGTCGACCGAGATCAATGAAAAATATAACGACGATGACCCTGATGGAAACAACCACGATCGTTCCAAGAATCCTCATTAA

Coding sequence (CDS)

ATGGACACCAAGAAATTCTTCCAATTGGTTGAGGAGAAGAAGAAGAGAGCTTTGGAGAAGAAGGAAGCTCCATTGAAATGGGAACAAAAACTTGAAGCTGCTGCCAAGGCAAAGGCTGATCATGAGGGAGGCCGGAGAGCAGGTAAGAGAATTCATAAGAAGCACAGGAAACATAGCCACTCTGATTCAGGTGACTATGAGAAGATGAAGGATAGAAAATCCAAGAGAAAACCAAAACGTCGTCGCTCGTCTAATGATGTCAGCAGTGATGAATTTGGTGACCACTCTGAAGAAGATAGGAGGAAGAAGAGAAACCATAGAAGACATATTCATGATGATTCAAGTTCCGATGAAAGTTACTCCGGTTCTTCTAACGATGATATTGAGACAACTAAAAGAAGTCACTCCCGGCGTCACAAACATCATAGGCGACCTAACTATTCATCATCTGACGATTCTAGCAGTGAGGATGATACTAGTTTGCGAAGGAAAAGGCATGTGAGGCACCACAGGCCCCACCATCGACACGGGCAATCCCATCGATCGTGTAGTATCGATTCTTTAGATTGTAATTATGGCAGGCATGAGGCTAGAAGCCAGTCTTCAGGGAAGTCATCTGATGATAATCATGAAGAAGAATCAGCACTACAATCTCGGCACAAGAGAGAGAATCACCATCACAAACATCGGCACCACCATCATTCAGGTGAGAACAAGCATTCATTCAATGGGTCGACCGAGATCAATGAAAAATATAACGACGATGACCCTGATGGAAACAACCACGATCGTTCCAAGAATCCTCATTAA

Protein sequence

MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKHRKHSHSDSGDYEKMKDRKSKRKPKRRRSSNDVSSDEFGDHSEEDRRKKRNHRRHIHDDSSSDESYSGSSNDDIETTKRSHSRRHKHHRRPNYSSSDDSSSEDDTSLRRKRHVRHHRPHHRHGQSHRSCSIDSLDCNYGRHEARSQSSGKSSDDNHEEESALQSRHKRENHHHKHRHHHHSGENKHSFNGSTEINEKYNDDDPDGNNHDRSKNPH
BLAST of Carg19030 vs. NCBI nr
Match: XP_022945808.1 (uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita moschata] >XP_022945809.1 uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita moschata] >XP_022945810.1 uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita moschata] >XP_022945811.1 uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita moschata])

HSP 1 Score: 187.6 bits (475), Expect = 5.6e-44
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0

Query: 1   MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKXXXXSH 60
           MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKXXXXSH
Sbjct: 1   MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKXXXXSH 60

Query: 61  SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH 180

Query: 181 RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKH 240
           RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKH
Sbjct: 181 RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKH 240

Query: 241 SFNGSTEINEKYNDDDPDGNNHDRSKNPH 270
           SFNGSTEINEKYNDDDPDGNNHDRSKNPH
Sbjct: 241 SFNGSTEINEKYNDDDPDGNNHDRSKNPH 269

BLAST of Carg19030 vs. NCBI nr
Match: XP_022968658.1 (uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita maxima] >XP_022968659.1 uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita maxima])

HSP 1 Score: 180.3 bits (456), Expect = 9.0e-42
Identity = 265/269 (98.51%), Postives = 268/269 (99.63%), Query Frame = 0

Query: 1   MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKXXXXSH 60
           MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIH+KXXXXSH
Sbjct: 1   MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHRKXXXXSH 60

Query: 61  SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH 180

Query: 181 RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKH 240
           RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KH
Sbjct: 181 RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKH 240

Query: 241 SFNGSTEINEKYNDDDPDGNNHDRSKNPH 270
           SFNGST+I+EKYNDDDPDGNNHDRSKNPH
Sbjct: 241 SFNGSTKIDEKYNDDDPDGNNHDRSKNPH 269

BLAST of Carg19030 vs. NCBI nr
Match: XP_023541098.1 (uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita pepo subsp. pepo] >XP_023541099.1 uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 6.4e-40
Identity = 260/269 (96.65%), Postives = 261/269 (97.03%), Query Frame = 0

Query: 1   MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKXXXXSH 60
           MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKK    SH
Sbjct: 1   MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKKHRKHSH 60

Query: 61  SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SDSGDYEKMKDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQSH 180

Query: 181 RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKH 240
           RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 181 RSCSIDSLDCNYGRHEARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 SFNGSTEINEKYNDDDPDGNNHDRSKNPH 270
           SFNGSTEI+EKYNDDDPDGNNHDRSKN H
Sbjct: 241 SFNGSTEIDEKYNDDDPDGNNHDRSKNSH 269

BLAST of Carg19030 vs. NCBI nr
Match: XP_022775917.1 (transcriptional regulator ATRX homolog [Durio zibethinus] >XP_022775918.1 transcriptional regulator ATRX homolog [Durio zibethinus])

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-08
Identity = 40/54 (74.07%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKK 55
          MD KKF QLVEEKKKRALEKKEAPLKWEQKLEAAA AK D E   R  K +  K
Sbjct: 1  MDCKKFIQLVEEKKKRALEKKEAPLKWEQKLEAAALAKVDVEAKERRSKSVKHK 54

BLAST of Carg19030 vs. NCBI nr
Match: KMZ67902.1 (hypothetical protein ZOSMA_252G00030 [Zostera marina])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHE 43
          MD KKF QLVEEKKKR LEKKEAPLKWEQKLEAA+K KAD E
Sbjct: 1  MDAKKFLQLVEEKKKRMLEKKEAPLKWEQKLEAASKTKADSE 42

BLAST of Carg19030 vs. TAIR10
Match: AT2G01100.1 (unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEA 34
          MD KKF Q+VEEKK+R LEK+EAPLKWEQKLEA
Sbjct: 1  MDCKKFIQMVEEKKRRVLEKQEAPLKWEQKLEA 33

BLAST of Carg19030 vs. TrEMBL
Match: tr|A0A0K9PI24|A0A0K9PI24_ZOSMR (Uncharacterized protein OS=Zostera marina OX=29655 GN=ZOSMA_252G00030 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.6e-08
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHE 43
          MD KKF QLVEEKKKR LEKKEAPLKWEQKLEAA+K KAD E
Sbjct: 1  MDAKKFLQLVEEKKKRMLEKKEAPLKWEQKLEAASKTKADSE 42

BLAST of Carg19030 vs. TrEMBL
Match: tr|A0A0V0I2Y1|A0A0V0I2Y1_SOLCH (Putative sarcoplasmic reticulum histidine-rich calcium-binding protein-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.1e-07
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKK 55
          MD KKF QLVEEKKKRALEKKE  LKWEQKLEA+A  K+D E G +     HK+
Sbjct: 1  MDAKKFMQLVEEKKKRALEKKEGHLKWEQKLEASANLKSDAEAGEKTKAAKHKR 54

BLAST of Carg19030 vs. TrEMBL
Match: tr|Q38M44|Q38M44_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.1e-07
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKK 55
          MD KKF QLVEEKKKRALEKKE  LKWEQKLEA+A  K+D E G +     HK+
Sbjct: 1  MDAKKFMQLVEEKKKRALEKKEGHLKWEQKLEASANLKSDAEAGEKTKAAKHKR 54

BLAST of Carg19030 vs. TrEMBL
Match: tr|A0A1J6JYT2|A0A1J6JYT2_NICAT (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_33809 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKADHEGGRRAGKRIHKK 55
          MD KKF QLVEEKKKRALEK EA LKWEQKLEAAAKA +D E    A    HK+
Sbjct: 1  MDAKKFMQLVEEKKKRALEKNEARLKWEQKLEAAAKAISDAEARENAKAAKHKR 54

BLAST of Carg19030 vs. TrEMBL
Match: tr|A0A1S2Y0U4|A0A1S2Y0U4_CICAR (G patch domain-containing protein TGH homolog OS=Cicer arietinum OX=3827 GN=LOC101498734 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1  MDTKKFFQLVEEKKKRALEKKEAPLKWEQKLEAAAKAKAD 41
          MDTK+F QLVEEKKK+ +E+KEAPLKWEQKLEAA+KA  D
Sbjct: 1  MDTKRFIQLVEEKKKKIMERKEAPLKWEQKLEAASKANTD 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945808.15.6e-44100.00uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucur... [more]
XP_022968658.19.0e-4298.51uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucur... [more]
XP_023541098.16.4e-4096.65uncharacterized zinc finger CCHC domain-containing protein At4g19190-like [Cucur... [more]
XP_022775917.15.0e-0874.07transcriptional regulator ATRX homolog [Durio zibethinus] >XP_022775918.1 transc... [more]
KMZ67902.11.4e-0785.71hypothetical protein ZOSMA_252G00030 [Zostera marina][more]
Match NameE-valueIdentityDescription
AT2G01100.12.3e-0781.82unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0K9PI24|A0A0K9PI24_ZOSMR9.6e-0885.71Uncharacterized protein OS=Zostera marina OX=29655 GN=ZOSMA_252G00030 PE=4 SV=1[more]
tr|A0A0V0I2Y1|A0A0V0I2Y1_SOLCH8.1e-0766.67Putative sarcoplasmic reticulum histidine-rich calcium-binding protein-like OS=S... [more]
tr|Q38M44|Q38M44_SOLTU8.1e-0766.67Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=2 SV=1[more]
tr|A0A1J6JYT2|A0A1J6JYT2_NICAT1.4e-0670.37Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_33809 PE=4 SV=1[more]
tr|A0A1S2Y0U4|A0A1S2Y0U4_CICAR4.0e-0677.50G patch domain-containing protein TGH homolog OS=Cicer arietinum OX=3827 GN=LOC1... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19030-RACarg19030-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..269
NoneNo IPR availablePANTHERPTHR37715FAMILY NOT NAMEDcoord: 1..46
coord: 173..251
coord: 42..184

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19030Carg01869Silver-seed gourdcarcarB629