Carg01869 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01869
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	sarcoplasmic reticulum histidine-rich calcium-binding protein
Location	Cucurbita_argyrosperma_scaffold_003 : 865647 .. 866498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCAAGAAATTCATCCAATTGGTTGAGGAGAAGAAGAGGAGAGCTTTGGAGAAGAAGGAAGCCCCATTGAAATGGGAACAAAGACTTGAAGCTGCTGCTAAGGCAGAGGCTGCTGAAGCCAAAGCAAGGAAGCTTAAAGCTGCCAAGCATAAAAGAAGATCAGTATCAAATTCTGATACTGATACAGAAAGTGATAGCCATGAGCGAGGAAGGAAAGCAGGTAAGAGAACTCATAAGAAACACAGGAGACATAGCCACTCTGATTCAGGTGACAGTGAGAAGAGGAAAGATAGAAGATCTAAGAGAAAGCTGAAACGACATCAATCATCTCACGATGACAGCAGTGATGAATTTGATGGGCACTCTGATGAAGGTAGGAGGAAGAAGAGAAACCATAGAAGACATGCGCATGACAATTCAAGTTCTGATGAAAGTTACTCTAGTTCTAGTGATGATGATGTTGAGACAAGAAAAAGATGTCGTTCCAGGCATAACAGACATCATAGACATATTGGCTATTCATCATCTGATGATTCTAGCAGTGAGAATAATAATCGAAGGGAAAAGCGTGGAAGGCATCGTCAACACGAGCAGTCCCATCGATCATGTAGTATTGATTCATTAGATTGCAATAACTGGAGGTGTGATGCTAGAAGCCAGGCCTCAGGGAGGTTATCTGATACTGATCATGAAGATTCAGCATTACAATACAGGCACAAGAGTAGCCACCATAACAAACACCGGCACCATCACTCAGGTGCCAGTGGTTTGACCCAGATCGATGAAGAACATGCTGACAATAACTCTGATGGAAATAACCATGGTCGAGCTAAGGATTCTCATTAA

mRNA sequence

ATGGACACCAAGAAATTCATCCAATTGGTTGAGGAGAAGAAGAGGAGAGCTTTGGAGAAGAAGGAAGCCCCATTGAAATGGGAACAAAGACTTGAAGCTGCTGCTAAGGCAGAGGCTGCTGAAGCCAAAGCAAGGAAGCTTAAAGCTGCCAAGCATAAAAGAAGATCAGTATCAAATTCTGATACTGATACAGAAAGTGATAGCCATGAGCGAGGAAGGAAAGCAGGTAAGAGAACTCATAAGAAACACAGGAGACATAGCCACTCTGATTCAGGTGACAGTGAGAAGAGGAAAGATAGAAGATCTAAGAGAAAGCTGAAACGACATCAATCATCTCACGATGACAGCAGTGATGAATTTGATGGGCACTCTGATGAAGGTAGGAGGAAGAAGAGAAACCATAGAAGACATGCGCATGACAATTCAAGTTCTGATGAAAGTTACTCTAGTTCTAGTGATGATGATGTTGAGACAAGAAAAAGATGTCGTTCCAGGCATAACAGACATCATAGACATATTGGCTATTCATCATCTGATGATTCTAGCAGTGAGAATAATAATCGAAGGGAAAAGCGTGGAAGGCATCGTCAACACGAGCAGTCCCATCGATCATGTAGTATTGATTCATTAGATTGCAATAACTGGAGGTGTGATGCTAGAAGCCAGGCCTCAGGGAGGTTATCTGATACTGATCATGAAGATTCAGCATTACAATACAGGCACAAGAGTAGCCACCATAACAAACACCGGCACCATCACTCAGGTGCCAGTGGTTTGACCCAGATCGATGAAGAACATGCTGACAATAACTCTGATGGAAATAACCATGGTCGAGCTAAGGATTCTCATTAA

Coding sequence (CDS)

ATGGACACCAAGAAATTCATCCAATTGGTTGAGGAGAAGAAGAGGAGAGCTTTGGAGAAGAAGGAAGCCCCATTGAAATGGGAACAAAGACTTGAAGCTGCTGCTAAGGCAGAGGCTGCTGAAGCCAAAGCAAGGAAGCTTAAAGCTGCCAAGCATAAAAGAAGATCAGTATCAAATTCTGATACTGATACAGAAAGTGATAGCCATGAGCGAGGAAGGAAAGCAGGTAAGAGAACTCATAAGAAACACAGGAGACATAGCCACTCTGATTCAGGTGACAGTGAGAAGAGGAAAGATAGAAGATCTAAGAGAAAGCTGAAACGACATCAATCATCTCACGATGACAGCAGTGATGAATTTGATGGGCACTCTGATGAAGGTAGGAGGAAGAAGAGAAACCATAGAAGACATGCGCATGACAATTCAAGTTCTGATGAAAGTTACTCTAGTTCTAGTGATGATGATGTTGAGACAAGAAAAAGATGTCGTTCCAGGCATAACAGACATCATAGACATATTGGCTATTCATCATCTGATGATTCTAGCAGTGAGAATAATAATCGAAGGGAAAAGCGTGGAAGGCATCGTCAACACGAGCAGTCCCATCGATCATGTAGTATTGATTCATTAGATTGCAATAACTGGAGGTGTGATGCTAGAAGCCAGGCCTCAGGGAGGTTATCTGATACTGATCATGAAGATTCAGCATTACAATACAGGCACAAGAGTAGCCACCATAACAAACACCGGCACCATCACTCAGGTGCCAGTGGTTTGACCCAGATCGATGAAGAACATGCTGACAATAACTCTGATGGAAATAACCATGGTCGAGCTAAGGATTCTCATTAA

Protein sequence

MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLEAAAKAEAAEAKARKLKAAKHKRRSVSNSDTDTESDSHERGRKAGKRTHKKHRRHSHSDSGDSEKRKDRRSKRKLKRHQSSHDDSSDEFDGHSDEGRRKKRNHRRHAHDNSSSDESYSSSSDDDVETRKRCRSRHNRHHRHIGYSSSDDSSSENNNRREKRGRHRQHEQSHRSCSIDSLDCNNWRCDARSQASGRLSDTDHEDSALQYRHKSSHHNKHRHHHSGASGLTQIDEEHADNNSDGNNHGRAKDSH

Homology

[Close]

BLAST of Carg01869 vs. NCBI nr
Match: XP_022957050.1 (CAX-interacting protein 4 [Cucurbita moschata] >XP_022957051.1 CAX-interacting protein 4 [Cucurbita moschata])

HSP 1 Score: 128.6 bits (322), Expect = 3.3e-26
Identity = 65/80 (81.25%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 204 SCSIDSLDCNNWRCDARSQASGRLSDTDHEDSALQYRHKSSXXXXXXXXXXXASGLTQID 263
           SCSIDSLDCN+WRCDARSQASGRLSD D EDSALQYRHKSS           A GLTQID
Sbjct: 204 SCSIDSLDCNHWRCDARSQASGRLSDADREDSALQYRHKSSHPNKHRHHHSGAGGLTQID 263

Query: 264 EEHADNNSDGNNHGRAKDSH 284
           EEHADNNSDGNNHGRAKDSH
Sbjct: 264 EEHADNNSDGNNHGRAKDSH 283

[Close]

BLAST of Carg01869 vs. NCBI nr
Match: XP_022984391.1 (sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucurbita maxima] >XP_022984467.1 sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucurbita maxima])

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-22
Identity = 72/80 (90.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 204 SCSIDSLDCNNWRCDARSQASGRLSDTDHEDSALQYRHKSSXXXXXXXXXXXASGLTQID 263
           SCSIDSLDCN WR DARSQASGRLSD DHEDSALQYRHKS XXXXXXXXXXX S LTQID
Sbjct: 203 SCSIDSLDCNYWRWDARSQASGRLSDADHEDSALQYRHKSXXXXXXXXXXXXXSSLTQID 262

Query: 264 EEHADNNSDGNNHGRAKDSH 284
           EEHADN SDGNN GRAKDSH
Sbjct: 263 EEHADNVSDGNNRGRAKDSH 282

[Close]

BLAST of Carg01869 vs. NCBI nr
Match: XP_023542983.1 (CAX-interacting protein 4 [Cucurbita pepo subsp. pepo] >XP_023542992.1 CAX-interacting protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-19
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 204 SCSIDSLDCNNWRCDARSQASGRLSDTDHEDSALQYRHKSSXXXXXXXXXXXASGLTQID 263
           SCSIDSLDCN WRCDARSQASGRLSD DHEDSALQY+HKSS XXXXXXXX  ASGLTQID
Sbjct: 205 SCSIDSLDCNYWRCDARSQASGRLSDADHEDSALQYKHKSSHXXXXXXXXSGASGLTQID 264

Query: 264 EEHADNN 271
           EEHADN+
Sbjct: 265 EEHADND 271

[Close]

BLAST of Carg01869 vs. NCBI nr
Match: XP_004135066.1 (PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucumis sativus] >XP_004135067.1 PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucumis sativus] >XP_011655808.1 PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucumis sativus] >KGN52131.1 hypothetical protein Csa_5G611620 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLE 33
          MDTKKFIQLVEEKK+RALEKKEAPLKWEQ+LE
Sbjct: 1  MDTKKFIQLVEEKKKRALEKKEAPLKWEQKLE 32

[Close]

BLAST of Carg01869 vs. NCBI nr
Match: XP_004299012.1 (PREDICTED: protein FAM133-like [Fragaria vesca subsp. vesca] >XP_004299013.1 PREDICTED: protein FAM133-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLE 33
          MDTKKF+QLVEEKKRRALEKKEAPLKWEQ+LE
Sbjct: 1  MDTKKFMQLVEEKKRRALEKKEAPLKWEQKLE 32

[Close]

BLAST of Carg01869 vs. TAIR10
Match: AT2G01100.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-08
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLEA 34
          MD KKFIQ+VEEKKRR LEK+EAPLKWEQ+LEA
Sbjct: 1  MDCKKFIQMVEEKKRRVLEKQEAPLKWEQKLEA 33

[Close]

BLAST of Carg01869 vs. TrEMBL
Match: tr|A0A2N9FN98|A0A2N9FN98_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16442 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLEA 34
          MDTK+FIQLVEEKK+RALEKKEAPLKWEQ+LEA
Sbjct: 1  MDTKRFIQLVEEKKKRALEKKEAPLKWEQKLEA 33

[Close]

BLAST of Carg01869 vs. TrEMBL
Match: tr|A0A1S3BFN5|A0A1S3BFN5_CUCME (sarcoplasmic reticulum histidine-rich calcium-binding protein OS=Cucumis melo OX=3656 GN=LOC103489331 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLE 33
          MDTKKFIQLVEEKK+RALEKKEAPLKWEQ+LE
Sbjct: 1  MDTKKFIQLVEEKKKRALEKKEAPLKWEQKLE 32

[Close]

BLAST of Carg01869 vs. TrEMBL
Match: tr|A0A2I0XEK8|A0A2I0XEK8_9ASPA (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca002165 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLEA 34
          MDTKKFIQLVEEKK+R LEKKEAPLKWEQ+LEA
Sbjct: 1  MDTKKFIQLVEEKKKRVLEKKEAPLKWEQKLEA 33

[Close]

BLAST of Carg01869 vs. TrEMBL
Match: tr|A0A2P5DCM4|A0A2P5DCM4_9ROSA (FAM133-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_255450 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLE 33
          MDTKKFIQLVEEKK+RALEKKEAPLKWEQ+LE
Sbjct: 1  MDTKKFIQLVEEKKKRALEKKEAPLKWEQKLE 32

[Close]

BLAST of Carg01869 vs. TrEMBL
Match: tr|A0A0A0KWI8|A0A0A0KWI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611620 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDTKKFIQLVEEKKRRALEKKEAPLKWEQRLE 33
          MDTKKFIQLVEEKK+RALEKKEAPLKWEQ+LE
Sbjct: 1  MDTKKFIQLVEEKKKRALEKKEAPLKWEQKLE 32

The following BLAST results are available for this feature:

BLAST of Carg01869 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957050.1	3.3e-26	81.25	CAX-interacting protein 4 [Cucurbita moschata] >XP_022957051.1 CAX-interacting p...	[more]
XP_022984391.1	3.7e-22	90.00	sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucurbita maxima]...	[more]
XP_023542983.1	6.6e-19	89.55	CAX-interacting protein 4 [Cucurbita pepo subsp. pepo] >XP_023542992.1 CAX-inter...	[more]
XP_004135066.1	1.1e-05	93.75	PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Cucumi...	[more]
XP_004299012.1	1.1e-05	93.75	PREDICTED: protein FAM133-like [Fragaria vesca subsp. vesca] >XP_004299013.1 PRE...	[more]

BLAST of Carg01869 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01100.1	2.2e-08	84.85	unknown protein	[more]

BLAST of Carg01869 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01869 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9FN98\|A0A2N9FN98_FAGSY	5.5e-06	90.91	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16442 PE=4 SV=1	[more]
tr\|A0A1S3BFN5\|A0A1S3BFN5_CUCME	7.2e-06	93.75	sarcoplasmic reticulum histidine-rich calcium-binding protein OS=Cucumis melo OX...	[more]
tr\|A0A2I0XEK8\|A0A2I0XEK8_9ASPA	7.2e-06	90.91	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca002165 PE=4...	[more]
tr\|A0A2P5DCM4\|A0A2P5DCM4_9ROSA	7.2e-06	93.75	FAM133-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_255450 PE=4 SV=1	[more]
tr\|A0A0A0KWI8\|A0A0A0KWI8_CUCSA	7.2e-06	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611620 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01869-RA	Carg01869-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..283
None	No IPR available	PANTHER	PTHR37715	FAMILY NOT NAMED	coord: 1..186 coord: 169..279

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01869	Cla020438	Watermelon (97103) v1	carwmB0842
Carg01869	Csa5G611620	Cucumber (Chinese Long) v2	carcuB0857
Carg01869	MELO3C012294	Melon (DHL92) v3.5.1	carmeB0834
Carg01869	CSPI05G25760	Wild cucumber (PI 183967)	carcpiB0877
Carg01869	Cucsa.283120	Cucumber (Gy14) v1	carcgyB0968
Carg01869	CmaCh04G014710	Cucurbita maxima (Rimu)	carcmaB1170
Carg01869	CmaCh18G009820	Cucurbita maxima (Rimu)	carcmaB1167
Carg01869	CmoCh04G015440	Cucurbita moschata (Rifu)	carcmoB1138
Carg01869	CmoCh18G009900	Cucurbita moschata (Rifu)	carcmoB1135
Carg01869	Lsi04G002030	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01869	Cp4.1LG09g03420	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01869	Cp4.1LG01g14060	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01869	MELO3C012294.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01869	CsaV3_5G034830	Cucumber (Chinese Long) v3	carcucB0881
Carg01869	Cla97C05G104070	Watermelon (97103) v2	carwmbB0878

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01869	Carg19030	Silver-seed gourd	carcarB629

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01869	Cucumber (Chinese Long) v3	carcucB0887
Carg01869	Bottle gourd (USVL1VR-Ls)	carlsiB763
Carg01869	Bottle gourd (USVL1VR-Ls)	carlsiB769
Carg01869	Melon (DHL92) v3.5.1	carmeB0830
Carg01869	Melon (DHL92) v3.6.1	carmedB0842
Carg01869	Watermelon (Charleston Gray)	carwcgB0816
Carg01869	Watermelon (Charleston Gray)	carwcgB0811
Carg01869	Watermelon (97103) v1	carwmB0843
Carg01869	Watermelon (97103) v2	carwmbB0870
Carg01869	Wax gourd	carwgoB0975
Carg01869	Wax gourd	carwgoB0979
Carg01869	Wax gourd	carwgoB0983
Carg01869	Cucumber (Gy14) v2	carcgybB0831
Carg01869	Cucumber (Gy14) v2	carcgybB0836
Carg01869	Cucumber (Gy14) v1	carcgyB0965
Carg01869	Cucurbita maxima (Rimu)	carcmaB1161
Carg01869	Cucurbita maxima (Rimu)	carcmaB1169
Carg01869	Cucurbita moschata (Rifu)	carcmoB1130
Carg01869	Cucurbita moschata (Rifu)	carcmoB1137
Carg01869	Cucurbita pepo (Zucchini)	carcpeB1175
Carg01869	Wild cucumber (PI 183967)	carcpiB0883
Carg01869	Cucumber (Chinese Long) v2	carcuB0863