Carg18828 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18828
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	late embryogenesis abundant protein 1
Location	Cucurbita_argyrosperma_scaffold_123 : 439455 .. 439955 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTAGTTTACCGCAACCAAATCGATATCAAACGCAGCCGTTTAGAACATATTATATATTTCAATTATTGTGTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCAAATTTGTTATTGGAAAAAACTATATTTTAAAAAATTTGCAAATGGGTCCTTACAAAATTGCTTATTTATTTATTTTGATATGGTTTAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

mRNA sequence

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Coding sequence (CDS)

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Protein sequence

MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI

Homology

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BLAST of Carg18828 vs. NCBI nr
Match: XP_008461082.1 (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 43/78 (55.13%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1  MASQQD-ISHSVGEAVGQAQVKKDE-----------------------------TGEQVK 49
          MAS QD +SH  GE VGQAQVKKDE                             TGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

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BLAST of Carg18828 vs. NCBI nr
Match: OMO54276.1 (late embryogenesis abundant protein 1-like protein [Corchorus capsularis])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSS 52
          MA+ Q+I    GE  GQAQ     TGEQVKNMAQGAA+AVKNTLGMNTD++
Sbjct: 1  MATAQNIGEKAGEITGQAQ-----TGEQVKNMAQGAADAVKNTLGMNTDNT 46

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BLAST of Carg18828 vs. NCBI nr
Match: OMP00153.1 (late embryogenesis abundant protein 1-like protein [Corchorus olitorius])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSS 52
          MA+ Q+I    GE  GQAQ     TGEQVKNMAQGAA+AVKNTLGMNTD++
Sbjct: 1  MATAQNIGEKAGEITGQAQ-----TGEQVKNMAQGAADAVKNTLGMNTDNT 46

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BLAST of Carg18828 vs. NCBI nr
Match: XP_022991676.1 (late embryogenesis abundant protein 1-like [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 39/81 (48.15%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 1  MASQQDISHSVGEAVGQAQVKKD-------------------------------ETGEQV 51
          MASQQD+S+  GE VGQAQ  KD                               +TGEQV
Sbjct: 1  MASQQDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGEQV 60

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BLAST of Carg18828 vs. NCBI nr
Match: XP_021298725.1 (late embryogenesis abundant protein 2-like [Herrania umbratica])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 41/83 (49.40%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 1  MASQ--QDISHSVGEAVGQAQVKKDE------------------------------TGEQ 52
          MAS+  Q+I H  GE  GQAQVKKDE                              TGEQ
Sbjct: 1  MASRTAQNIGHQAGEITGQAQVKKDETMNQASQGTNTQSSDQNSSIASQATNFLQQTGEQ 60

[Close]

BLAST of Carg18828 vs. TAIR10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related)

HSP 1 Score: 47.0 bits (110), Expect = 5.5e-06
Identity = 34/91 (37.36%), Postives = 40/91 (43.96%), Query Frame = 0


Query: 1  MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 48
          M+S Q +SHS GE  GQ Q+KK+E                                    
Sbjct: 1  MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

[Close]

BLAST of Carg18828 vs. TAIR10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol.)

HSP 1 Score: 42.4 bits (98), Expect = 1.4e-04
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 1  MASQQDISHSV--GEAVGQAQVKKD-------------ETGEQVKNMAQGAAEAVKNTLG 52
          MAS QD   SV  G+ VGQA VK++             + GE+VK+MA  A+EAVKN LG
Sbjct: 1  MASGQDEEFSVRAGQIVGQAHVKENDCNNSSQASGFLQQKGEKVKSMAHDASEAVKNKLG 60

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BLAST of Carg18828 vs. TrEMBL
Match: tr|A0A1S3CF46|A0A1S3CF46_CUCME (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 43/78 (55.13%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1  MASQQD-ISHSVGEAVGQAQVKKDE-----------------------------TGEQVK 49
          MAS QD +SH  GE VGQAQVKKDE                             TGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

[Close]

BLAST of Carg18828 vs. TrEMBL
Match: tr|A0A1R3G895|A0A1R3G895_COCAP (Late embryogenesis abundant protein 1-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27923 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSS 52
          MA+ Q+I    GE  GQAQ     TGEQVKNMAQGAA+AVKNTLGMNTD++
Sbjct: 1  MATAQNIGEKAGEITGQAQ-----TGEQVKNMAQGAADAVKNTLGMNTDNT 46

[Close]

BLAST of Carg18828 vs. TrEMBL
Match: tr|A0A1R3JZ79|A0A1R3JZ79_9ROSI (Late embryogenesis abundant protein 1-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_12894 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSS 52
          MA+ Q+I    GE  GQAQ     TGEQVKNMAQGAA+AVKNTLGMNTD++
Sbjct: 1  MATAQNIGEKAGEITGQAQ-----TGEQVKNMAQGAADAVKNTLGMNTDNT 46

[Close]

BLAST of Carg18828 vs. TrEMBL
Match: tr|B9GKX8|B9GKX8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G172900v3 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-05
Identity = 35/71 (49.30%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 6  DISHSVGEAVGQAQVKKD----------------------------ETGEQVKNMAQGAA 49
          DI+++ GE  GQAQ KKD                            +TGEQVKNMAQGAA
Sbjct: 7  DITYNAGELAGQAQAKKDDVMDQCQEGLNQSTQDSSYTAQASSFLHQTGEQVKNMAQGAA 66

[Close]

BLAST of Carg18828 vs. TrEMBL
Match: tr|A0A061GBL6|A0A061GBL6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_028329 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-05
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 1  MASQ--QDISHSVGEAVGQAQVKKDE------------------------------TGEQ 52
          MAS+  Q+I +  G+  GQAQVKKDE                              TGEQ
Sbjct: 1  MASRTAQNIGNQGGDITGQAQVKKDETMNQASQGTNTQSSDQNSSIASQATNFLQQTGEQ 60

The following BLAST results are available for this feature:

BLAST of Carg18828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461082.1	3.1e-07	55.13	PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]	[more]
OMO54276.1	1.6e-06	66.67	late embryogenesis abundant protein 1-like protein [Corchorus capsularis]	[more]
OMP00153.1	1.6e-06	66.67	late embryogenesis abundant protein 1-like protein [Corchorus olitorius]	[more]
XP_022991676.1	2.0e-06	48.15	late embryogenesis abundant protein 1-like [Cucurbita maxima]	[more]
XP_021298725.1	4.5e-06	49.40	late embryogenesis abundant protein 2-like [Herrania umbratica]	[more]

BLAST of Carg18828 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52680.1	5.5e-06	37.36	late embryogenesis abundant protein-related / LEA protein-related	[more]
AT1G15415.1	1.4e-04	45.45	The protein encoded by this gene was identified as a part of pollen proteome by...	[more]

BLAST of Carg18828 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18828 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF46\|A0A1S3CF46_CUCME	2.1e-07	55.13	late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE...	[more]
tr\|A0A1R3G895\|A0A1R3G895_COCAP	1.0e-06	66.67	Late embryogenesis abundant protein 1-like protein OS=Corchorus capsularis OX=21...	[more]
tr\|A0A1R3JZ79\|A0A1R3JZ79_9ROSI	1.0e-06	66.67	Late embryogenesis abundant protein 1-like protein OS=Corchorus olitorius OX=937...	[more]
tr\|B9GKX8\|B9GKX8_POPTR	5.7e-05	49.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G172900v3 PE=...	[more]
tr\|A0A061GBL6\|A0A061GBL6_THECC	9.7e-05	46.99	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_028329 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18828-RA	Carg18828-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..48

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18828	Cla015385	Watermelon (97103) v1	carwmB0744
Carg18828	Csa7G433240	Cucumber (Chinese Long) v2	carcuB0762
Carg18828	MELO3C023400	Melon (DHL92) v3.5.1	carmeB0740
Carg18828	ClCG09G002700	Watermelon (Charleston Gray)	carwcgB0724
Carg18828	CSPI07G20820	Wild cucumber (PI 183967)	carcpiB0779
Carg18828	Cucsa.105240	Cucumber (Gy14) v1	carcgyB0837
Carg18828	CmaCh08G006690	Cucurbita maxima (Rimu)	carcmaB1046
Carg18828	CmaCh17G008430	Cucurbita maxima (Rimu)	carcmaB1044
Carg18828	CmoCh08G006350	Cucurbita moschata (Rifu)	carcmoB1018
Carg18828	Lsi02G027310	Bottle gourd (USVL1VR-Ls)	carlsiB683
Carg18828	Cp4.1LG12g07900	Cucurbita pepo (Zucchini)	carcpeB1049
Carg18828	Cp4.1LG17g05830	Cucurbita pepo (Zucchini)	carcpeB1051
Carg18828	CsGy7G019060	Cucumber (Gy14) v2	carcgybB0741
Carg18828	MELO3C023400.2	Melon (DHL92) v3.6.1	carmedB0753
Carg18828	CsaV3_7G032630	Cucumber (Chinese Long) v3	carcucB0782
Carg18828	Bhi09G000042	Wax gourd	carwgoB0880

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18828	Carg09569	Silver-seed gourd	carcarB597

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18828	Silver-seed gourd	carcarB596
Carg18828	Watermelon (97103) v2	carwmbB0784