CmaCh17G008430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G008430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant family protein
Location	Cma_Chr17 : 6577255 .. 6577647 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCCAACAGGATTTGAGCTACAAGGCTGGGGAGACTGTTGGGCAAGCTCAGGCAAGTAAGGATGACATTATGAGCCAACTAACATCCACCCAGGATGCCCAATCCGCCGCCCAAACTGCCACCGACCTGAAGGACCAAGCTGCCAACTTCCTCCAACAGGCAATTTACATGTCATTTTCTCTAATTTCACTGACAAGAATGGCTGTGTTTCTTTTAATACTTTGGTGTTTTTGTGTGTGTGTGTGTGTGTAGACTGGAGAGCAAGTGAAGAGCATGGCTCAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACCGACACTGATACCACCACCGCACCCAACAACAACCCTACCAACAATCCTTCCCCTACAATTTAA

mRNA sequence

ATGGCAAGCCAACAGGATTTGAGCTACAAGGCTGGGGAGACTGTTGGGCAAGCTCAGGCAAGTAAGGATGACATTATGAGCCAACTAACATCCACCCAGGATGCCCAATCCGCCGCCCAAACTGCCACCGACCTGAAGGACCAAGCTGCCAACTTCCTCCAACAGACTGGAGAGCAAGTGAAGAGCATGGCTCAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACCGACACTGATACCACCACCGCACCCAACAACAACCCTACCAACAATCCTTCCCCTACAATTTAA

Coding sequence (CDS)

ATGGCAAGCCAACAGGATTTGAGCTACAAGGCTGGGGAGACTGTTGGGCAAGCTCAGGCAAGTAAGGATGACATTATGAGCCAACTAACATCCACCCAGGATGCCCAATCCGCCGCCCAAACTGCCACCGACCTGAAGGACCAAGCTGCCAACTTCCTCCAACAGACTGGAGAGCAAGTGAAGAGCATGGCTCAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACCGACACTGATACCACCACCGCACCCAACAACAACCCTACCAACAATCCTTCCCCTACAATTTAA

Protein sequence

MASQQDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGEQVKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPSPTI

Homology

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BLAST of CmaCh17G008430 vs. Swiss-Prot
Match: LEA1_CICAR (Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.7e-06
Identity = 38/94 (40.43%), Postives = 47/94 (50.00%), Query Frame = 1


Query: 3   SQQDLSYKAGETVGQAQASKDDIMSQLTSTQD----------------AQSAAQTATDLK 62
           +QQ       ET   AQA+KD       +T++                 QS  +TA   K
Sbjct: 72  TQQTAQAAKDETQQTAQAAKDKTQQTTEATKEKAQDTTGRAREKGSEMGQSTKETAQSGK 131

Query: 63  DQAANFLQQTGEQVKSMAQGAAEAVKNTLGMKTD 81
           D +A FLQQTGE+VK MAQGA +AVK T GM  D
Sbjct: 132 DNSAGFLQQTGEKVKGMAQGATDAVKQTFGMAND 165

[Close]

BLAST of CmaCh17G008430 vs. TrEMBL
Match: A0A0A0K8V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-23
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 1   MASQQDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGEQV 60
           MAS QDLS+KA E VGQAQ  +D++M+Q T TQD  SAAQTATDLKDQAA+FLQQTGEQV
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQPT-TQDQSSAAQTATDLKDQAASFLQQTGEQV 60

Query: 61  KSMAQGAAEAVKNTLGMKTD-TDTTTAPN------NNPTNNPS 97
           K+MAQGAAEAVKNTLGM TD T  T   N      NNPTNNP+
Sbjct: 61  KNMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPA 102

[Close]

BLAST of CmaCh17G008430 vs. TrEMBL
Match: A0A059BSC4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02549 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-12
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 1   MASQ-QDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTAT------DLKDQAANFL 60
           MA+Q QD+ Y AG+  GQAQ  K++ M Q ++   A     + T      D+K QA NFL
Sbjct: 1   MANQGQDIGYAAGQMTGQAQLKKEECMDQASNEYQATMDKLSGTTPNSGYDIKGQATNFL 60

Query: 61  QQTGEQVKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPS 97
           QQTGEQVKSMA GAAEAVK+TLGM  D     A   NP NNPS
Sbjct: 61  QQTGEQVKSMAHGAAEAVKSTLGMNNDAAGDAAATVNPPNNPS 103

[Close]

BLAST of CmaCh17G008430 vs. TrEMBL
Match: A0A061GBL6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028329 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-12
Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1  MASQ--QDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGE 60
          MAS+  Q++  + G+  GQAQ  KD+ M+Q +   + QS+ Q ++ +  QA NFLQQTGE
Sbjct: 1  MASRTAQNIGNQGGDITGQAQVKKDETMNQASQGTNTQSSDQNSS-IASQATNFLQQTGE 60

Query: 61 QVKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPSP 98
          QVK+MAQGAA+AVKNTLGM  D +++ AP+ N  +NPSP
Sbjct: 61 QVKNMAQGAADAVKNTLGMNND-NSSNAPSTNHPSNPSP 97

[Close]

BLAST of CmaCh17G008430 vs. TrEMBL
Match: B9GKX8_POPTR (Late embryogenesis abundant family protein OS=Populus trichocarpa GN=POPTR_0001s17300g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 52/97 (53.61%), Postives = 65/97 (67.01%), Query Frame = 1


Query: 6  DLSYKAGETVGQAQASKDDIMSQLTS--TQDAQSAAQTATDLKDQAANFLQQTGEQVKSM 65
          D++Y AGE  GQAQA KDD+M Q      Q  Q ++ TA     QA++FL QTGEQVK+M
Sbjct: 7  DITYNAGELAGQAQAKKDDVMDQCQEGLNQSTQDSSYTA-----QASSFLHQTGEQVKNM 66

Query: 66 AQGAAEAVKNTLGMKTDT--DTTTAPNNNPTNNPSPT 99
          AQGAAEAVKNTLGM T+    T T+  N+P N  +P+
Sbjct: 67 AQGAAEAVKNTLGMNTENTPTTNTSSLNHPINPSNPS 98

[Close]

BLAST of CmaCh17G008430 vs. TrEMBL
Match: U5CRL2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00039p00184170 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1


Query: 1  MASQQDLSYKAGETVGQAQASKDDIMSQLTST--------------------QDAQSAAQ 60
          M   QD+ YKAGE  G AQ  KD+++++   T                     ++QSA  
Sbjct: 1  MDRSQDIRYKAGEAKGHAQVKKDEMVNKAKDTAQTVKDKASDAAQSAKDSMSSNSQSARC 60

Query: 61 TATDLKDQAANFLQQTGEQVKSMAQGAAEAVKNTLGM 78
          +A + K++AA FLQQTGEQVK+MAQGA + VKNTLGM
Sbjct: 61 SAQESKEEAAGFLQQTGEQVKNMAQGAVDTVKNTLGM 97

[Close]

BLAST of CmaCh17G008430 vs. TAIR10
Match: AT1G52680.1 (AT1G52680.1 late embryogenesis abundant protein-related / LEA protein-related)

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-09
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1


Query: 1   MASQQDLSYKAGETVGQAQASKDDIMSQLTSTQD--------AQSAAQTATD-----LKD 60
           M+S Q LS+ AGE  GQ Q  K++ ++ ++   +        +QS   +  D     L  
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

Query: 61  QAANFLQQTGEQVKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNN 95
           QA++ +QQTG QVK+MAQGAA+AVKNTLGM   T++ ++P     +N
Sbjct: 61  QASSVIQQTGGQVKNMAQGAADAVKNTLGMSPATNSPSSPAGTTRSN 107

[Close]

BLAST of CmaCh17G008430 vs. NCBI nr
Match: gi|449436603|ref|XP_004136082.1| (PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 8.8e-23
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 1   MASQQDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGEQV 60
           MAS QDLS+KA E VGQAQ  +D++M+Q T TQD  SAAQTATDLKDQAA+FLQQTGEQV
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQPT-TQDQSSAAQTATDLKDQAASFLQQTGEQV 60

Query: 61  KSMAQGAAEAVKNTLGMKTD-TDTTTAPN------NNPTNNPS 97
           K+MAQGAAEAVKNTLGM TD T  T   N      NNPTNNP+
Sbjct: 61  KNMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPA 102

[Close]

BLAST of CmaCh17G008430 vs. NCBI nr
Match: gi|659122328|ref|XP_008461082.1| (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1


Query: 1  MASQQD-LSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGEQ 60
          MAS QD LS+KAGETVGQAQ  KD++M+Q T+    QSA QTA+DLKDQAANFLQQTGEQ
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHD--QSATQTASDLKDQAANFLQQTGEQ 60

Query: 61 VKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPS 97
          VK+MAQGAAEAVKNTLGM TD +T+   +NNPTNNP+
Sbjct: 61 VKNMAQGAAEAVKNTLGMNTD-NTSNPNSNNPTNNPT 94

[Close]

BLAST of CmaCh17G008430 vs. NCBI nr
Match: gi|1009174423|ref|XP_015868339.1| (PREDICTED: late embryogenesis abundant protein 2-like [Ziziphus jujuba])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 5  QDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGEQVKSMA 64
          QDL+Y+AGE  GQAQ  KD+ M+Q  S+  +QS+ Q A+D+K+QA +FLQQTGEQ+K+MA
Sbjct: 7  QDLAYQAGEITGQAQMKKDEFMNQ--SSNPSQSS-QNASDIKEQATHFLQQTGEQMKNMA 66

Query: 65 QGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPS 97
          QGAAEAVKNTLGM  D + T+   +  TNNPS
Sbjct: 67 QGAAEAVKNTLGMNADNNPTSR-GSGGTNNPS 94

[Close]

BLAST of CmaCh17G008430 vs. NCBI nr
Match: gi|702386532|ref|XP_010064785.1| (PREDICTED: late embryogenesis abundant protein 2-like [Eucalyptus grandis])

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 1   MASQ-QDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTAT------DLKDQAANFL 60
           MA+Q QD+ Y AG+  GQAQ  K++ M Q ++   A     + T      D+K QA NFL
Sbjct: 1   MANQGQDIGYAAGQMTGQAQLKKEECMDQASNEYQATMDKLSGTTPNSGYDIKGQATNFL 60

Query: 61  QQTGEQVKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPS 97
           QQTGEQVKSMA GAAEAVK+TLGM  D     A   NP NNPS
Sbjct: 61  QQTGEQVKSMAHGAAEAVKSTLGMNNDAAGDAAATVNPPNNPS 103

[Close]

BLAST of CmaCh17G008430 vs. NCBI nr
Match: gi|590617913|ref|XP_007023915.1| (Uncharacterized protein TCM_028329 [Theobroma cacao])

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-12
Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 1


Query: 1  MASQ--QDLSYKAGETVGQAQASKDDIMSQLTSTQDAQSAAQTATDLKDQAANFLQQTGE 60
          MAS+  Q++  + G+  GQAQ  KD+ M+Q +   + QS+ Q ++ +  QA NFLQQTGE
Sbjct: 1  MASRTAQNIGNQGGDITGQAQVKKDETMNQASQGTNTQSSDQNSS-IASQATNFLQQTGE 60

Query: 61 QVKSMAQGAAEAVKNTLGMKTDTDTTTAPNNNPTNNPSP 98
          QVK+MAQGAA+AVKNTLGM  D +++ AP+ N  +NPSP
Sbjct: 61 QVKNMAQGAADAVKNTLGMNND-NSSNAPSTNHPSNPSP 97

The following BLAST results are available for this feature:

BLAST of CmaCh17G008430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LEA1_CICAR	5.7e-06	40.43	Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1	[more]

BLAST of CmaCh17G008430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V2_CUCSA	6.1e-23	70.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1	[more]
A0A059BSC4_EUCGR	3.7e-12	52.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02549 PE=4 SV=1	[more]
A0A061GBL6_THECC	4.9e-12	51.52	Uncharacterized protein OS=Theobroma cacao GN=TCM_028329 PE=4 SV=1	[more]
B9GKX8_POPTR	1.8e-11	53.61	Late embryogenesis abundant family protein OS=Populus trichocarpa GN=POPTR_0001s...	[more]
U5CRL2_AMBTC	1.1e-08	44.33	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00039p00184170 PE=4 SV=...	[more]

BLAST of CmaCh17G008430 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52680.1	5.9e-09	39.25	late embryogenesis abundant protein-related / LEA protein-related	[more]

BLAST of CmaCh17G008430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436603\|ref\|XP_004136082.1\|	8.8e-23	70.87	PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus]	[more]
gi\|659122328\|ref\|XP_008461082.1\|	1.5e-22	73.20	PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]	[more]
gi\|1009174423\|ref\|XP_015868339.1\|	2.0e-14	59.78	PREDICTED: late embryogenesis abundant protein 2-like [Ziziphus jujuba]	[more]
gi\|702386532\|ref\|XP_010064785.1\|	5.3e-12	52.43	PREDICTED: late embryogenesis abundant protein 2-like [Eucalyptus grandis]	[more]
gi\|590617913\|ref\|XP_007023915.1\|	7.0e-12	51.52	Uncharacterized protein TCM_028329 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G008430.1	CmaCh17G008430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..94 score: 6.8
None	No IPR available	PANTHER	PTHR34191:SF3	F6D8.10-RELATED	coord: 1..94 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G008430	Cucsa.105240	Cucumber (Gy14) v1	cgycmaB0237
CmaCh17G008430	Cla015385	Watermelon (97103) v1	cmawmB328
CmaCh17G008430	Csa7G433240	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G008430	MELO3C023400	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G008430	ClCG09G002700	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G008430	CSPI07G20820	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G008430	CmoCh08G006350	Cucurbita moschata (Rifu)	cmacmoB367
CmaCh17G008430	MELO3C023400.2	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G008430	CsaV3_7G032630	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G008430	Cla97C09G164840	Watermelon (97103) v2	cmawmbB387
CmaCh17G008430	CsGy7G019060	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G008430	Carg09569	Silver-seed gourd	carcmaB1419
CmaCh17G008430	Carg18828	Silver-seed gourd	carcmaB1044

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G008430	CmaCh08G006690	Cucurbita maxima (Rimu)	cmacmaB383

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G008430	Watermelon (97103) v2	cmawmbB362
CmaCh17G008430	Watermelon (97103) v2	cmawmbB382
CmaCh17G008430	Wax gourd	cmawgoB0492
CmaCh17G008430	Cucurbita maxima (Rimu)	cmacmaB098
CmaCh17G008430	Cucurbita maxima (Rimu)	cmacmaB175
CmaCh17G008430	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G008430	Cucurbita maxima (Rimu)	cmacmaB368
CmaCh17G008430	Cucurbita maxima (Rimu)	cmacmaB380
CmaCh17G008430	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G008430	Cucurbita moschata (Rifu)	cmacmoB355
CmaCh17G008430	Cucurbita moschata (Rifu)	cmacmoB361
CmaCh17G008430	Watermelon (Charleston Gray)	cmawcgB332
CmaCh17G008430	Watermelon (97103) v1	cmawmB339
CmaCh17G008430	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G008430	Cucurbita pepo (Zucchini)	cmacpeB369
CmaCh17G008430	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G008430	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G008430	Cucurbita pepo (Zucchini)	cmacpeB391
CmaCh17G008430	Cucurbita pepo (Zucchini)	cmacpeB396
CmaCh17G008430	Bottle gourd (USVL1VR-Ls)	cmalsiB343
CmaCh17G008430	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G008430	Cucumber (Gy14) v2	cgybcmaB196
CmaCh17G008430	Silver-seed gourd	carcmaB0192
CmaCh17G008430	Silver-seed gourd	carcmaB0277
CmaCh17G008430	Silver-seed gourd	carcmaB0799
CmaCh17G008430	Cucumber (Chinese Long) v3	cmacucB0423