CmoCh08G006350 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G006350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant family protein
Location	Cmo_Chr08 : 4138537 .. 4139037 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTAGTTTACCGCAACCAAATCGATATCAAACGCAGCCGTTTAGAACATATTATATATTTCAATTATTGTGTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCAAATTTGTTATTGGAAAAAACTATATTTTAAAAAATTTGCAAATGGGTCCTTACAAAATTGCTTATTTATTTATTTTGATATGGTTTAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

mRNA sequence

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Coding sequence (CDS)

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Homology

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BLAST of CmoCh08G006350 vs. TrEMBL
Match: A0A0A0K8V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-24
Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MAS QD+SH   E VGQAQVK+DE++NQ             TT DQSSAAQTA+DLKDQA
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQP------------TTQDQSSAAQTATDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSN------AAANTNNPTNTPS 109
           A+FLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN      A  + NNPTN P+
Sbjct: 61  ASFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPA 102

[Close]

BLAST of CmoCh08G006350 vs. TrEMBL
Match: A0A059BSC4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02549 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.0e-15
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1


Query: 1   MASQ-QDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQ 60
           MA+Q QDI ++ G+  GQAQ+KK+E ++QA+N  Q   D  S T   S       D+K Q
Sbjct: 1   MANQGQDIGYAAGQMTGQAQLKKEECMDQASNEYQATMDKLSGTTPNSGY-----DIKGQ 60

Query: 61  AANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSP 110
           A NFLQQTGEQVK+MA GAAEAVK+TLGMN D++ +AAA  N P N   P
Sbjct: 61  ATNFLQQTGEQVKSMAHGAAEAVKSTLGMNNDAAGDAAATVNPPNNPSYP 105

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BLAST of CmoCh08G006350 vs. TrEMBL
Match: A0A061GBL6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028329 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-14
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 1


Query: 1   MASQ--QDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKD 60
           MAS+  Q+I +  G+  GQAQVKKDE +NQA+          + + DQ+S+      +  
Sbjct: 1   MASRTAQNIGNQGGDITGQAQVKKDETMNQASQGTN------TQSSDQNSS------IAS 60

Query: 61  QAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSP 110
           QA NFLQQTGEQVKNMAQGAA+AVKNTLGMN D+SSN A +TN+P+N PSP
Sbjct: 61  QATNFLQQTGEQVKNMAQGAADAVKNTLGMNNDNSSN-APSTNHPSN-PSP 97

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BLAST of CmoCh08G006350 vs. TrEMBL
Match: U5CRL2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00039p00184170 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1  MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQS---------SAAQ 60
          M   QDI +  GEA G AQVKKDE++N+A ++AQ  KD AS     +         SA  
Sbjct: 1  MDRSQDIRYKAGEAKGHAQVKKDEMVNKAKDTAQTVKDKASDAAQSAKDSMSSNSQSARC 60

Query: 61 TASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMN 90
          +A + K++AA FLQQTGEQVKNMAQGA + VKNTLGMN
Sbjct: 61 SAQESKEEAAGFLQQTGEQVKNMAQGAVDTVKNTLGMN 98

[Close]

BLAST of CmoCh08G006350 vs. TrEMBL
Match: A0A078HTR6_BRANA (BnaC06g05510D protein OS=Brassica napus GN=BnaC06g05510D PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1


Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           M+S Q++SH  GEA GQ Q+KK+E +N+ +++  E  D  S +   +   Q    L  QA
Sbjct: 1   MSSNQELSHKAGEATGQVQLKKEEYLNKVSHAMDENADHHSHS--HAEHDQNNPSLISQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPT 111
           +N +QQTG QVKNMAQGAA+AVKNTLGM     S A  N +NP  T  P+
Sbjct: 61  SNVIQQTGGQVKNMAQGAADAVKNTLGM-----SPATNNPSNPAGTTHPS 103

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BLAST of CmoCh08G006350 vs. TAIR10
Match: AT1G52680.1 (AT1G52680.1 late embryogenesis abundant protein-related / LEA protein-related)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQ--SSAAQTASDLKD 60
           M+S Q +SHS GE  GQ Q+KK+E +N  +++  +  D  + +  Q  S   Q    L  
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

Query: 61  QAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 112
           QA++ +QQTG QVKNMAQGAA+AVKNTLGM+  ++S ++      +N P   I
Sbjct: 61  QASSVIQQTGGQVKNMAQGAADAVKNTLGMSPATNSPSSPAGTTRSNKPGSKI 113

[Close]

BLAST of CmoCh08G006350 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.8e-06
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 1


Query: 2  ASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQAA 61
          ++ Q+IS   G+A GQ Q K   ++++A+N+AQ AK+S                      
Sbjct: 3  SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKES---------------------- 62

Query: 62 NFLQQTGEQVKNMAQGAAEAVKNTLGMN 90
            L++TG+Q+K  AQGA E+VKN  GMN
Sbjct: 63 --LKETGQQIKEKAQGATESVKNATGMN 66

[Close]

BLAST of CmoCh08G006350 vs. NCBI nr
Match: gi|449436603|ref|XP_004136082.1| (PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 8.9e-24
Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60
           MAS QD+SH   E VGQAQVK+DE++NQ             TT DQSSAAQTA+DLKDQA
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQP------------TTQDQSSAAQTATDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSN------AAANTNNPTNTPS 109
           A+FLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN      A  + NNPTN P+
Sbjct: 61  ASFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPA 102

[Close]

BLAST of CmoCh08G006350 vs. NCBI nr
Match: gi|659122328|ref|XP_008461082.1| (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-23
Identity = 74/109 (67.89%), Postives = 81/109 (74.31%), Query Frame = 1


Query: 1   MASQQD-ISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQ 60
           MAS QD +SH  GE VGQAQVKKDE++NQ              T    SA QTASDLKDQ
Sbjct: 1   MASHQDNLSHKAGETVGQAQVKKDEMMNQP-------------TAHDQSATQTASDLKDQ 60

Query: 61  AANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPS 109
           AANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN   N+NNPTN P+
Sbjct: 61  AANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN--PNSNNPTNNPT 94

[Close]

BLAST of CmoCh08G006350 vs. NCBI nr
Match: gi|1009174423|ref|XP_015868339.1| (PREDICTED: late embryogenesis abundant protein 2-like [Ziziphus jujuba])

HSP 1 Score: 91.7 bits (226), Expect = 8.9e-16
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 5   QDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQAANFL 64
           QD+++  GE  GQAQ+KKDE +NQ++N +Q              ++Q ASD+K+QA +FL
Sbjct: 7   QDLAYQAGEITGQAQMKKDEFMNQSSNPSQ--------------SSQNASDIKEQATHFL 66

Query: 65  QQTGEQVKNMAQGAAEAVKNTLGMNTDS--SSNAAANTNNPTNTPSPT 111
           QQTGEQ+KNMAQGAAEAVKNTLGMN D+  +S  +  TNNP++  +P+
Sbjct: 67  QQTGEQMKNMAQGAAEAVKNTLGMNADNNPTSRGSGGTNNPSHPSNPS 100

[Close]

BLAST of CmoCh08G006350 vs. NCBI nr
Match: gi|657961014|ref|XP_008372090.1| (PREDICTED: late embryogenesis abundant protein, group 3-like [Malus domestica])

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-15
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 5   QDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQ----------------SS 64
           QD+SH  GE  GQAQVKKDE +NQA+ +AQ A++ AS                     S 
Sbjct: 7   QDLSHKAGELTGQAQVKKDEFLNQASGAAQSAQNQASNLSQSAQNKASDASQSAQNKASD 66

Query: 65  AAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNT----DSSSNAAANTNNPT 111
           A+ T  D+KDQA + LQQT EQV+NMAQGAA+AVKNTLGMN+     + +N  +N  NP 
Sbjct: 67  ASHTGQDIKDQATHLLQQTSEQVRNMAQGAADAVKNTLGMNSPNDPSNQTNTPSNHTNPN 126

[Close]

BLAST of CmoCh08G006350 vs. NCBI nr
Match: gi|694410485|ref|XP_009333653.1| (PREDICTED: late embryogenesis abundant protein 1-like [Pyrus x bretschneideri])

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-15
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 5   QDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQ----------------SS 64
           QD+SH  GE  GQAQVKKDE +NQA+ +AQ A++ AS                     S 
Sbjct: 7   QDLSHKAGELTGQAQVKKDEFLNQASGAAQSAQNQASNLSQSAQNKASDASQSAQNKASD 66

Query: 65  AAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNT----DSSSNAAANTNNPT 111
           A+ T  D+KDQA + LQQT EQV+NMAQGAA+AVKNTLGMN+     + +N  +N  NP 
Sbjct: 67  ASHTGQDIKDQATHLLQQTSEQVRNMAQGAADAVKNTLGMNSPNDPSNQTNTPSNHTNPN 126

The following BLAST results are available for this feature:

BLAST of CmoCh08G006350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G006350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V2_CUCSA	6.2e-24	65.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1	[more]
A0A059BSC4_EUCGR	9.0e-15	53.64	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02549 PE=4 SV=1	[more]
A0A061GBL6_THECC	7.6e-14	55.86	Uncharacterized protein OS=Theobroma cacao GN=TCM_028329 PE=4 SV=1	[more]
U5CRL2_AMBTC	1.3e-13	54.08	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00039p00184170 PE=4 SV=...	[more]
A0A078HTR6_BRANA	3.0e-10	47.27	BnaC06g05510D protein OS=Brassica napus GN=BnaC06g05510D PE=4 SV=1	[more]

BLAST of CmoCh08G006350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52680.1	1.8e-11	42.48	late embryogenesis abundant protein-related / LEA protein-related	[more]
AT5G38760.1	6.8e-06	36.36	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CmoCh08G006350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436603\|ref\|XP_004136082.1\|	8.9e-24	65.79	PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus]	[more]
gi\|659122328\|ref\|XP_008461082.1\|	5.8e-23	67.89	PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]	[more]
gi\|1009174423\|ref\|XP_015868339.1\|	8.9e-16	51.85	PREDICTED: late embryogenesis abundant protein 2-like [Ziziphus jujuba]	[more]
gi\|657961014\|ref\|XP_008372090.1\|	4.4e-15	47.62	PREDICTED: late embryogenesis abundant protein, group 3-like [Malus domestica]	[more]
gi\|694410485\|ref\|XP_009333653.1\|	4.4e-15	47.62	PREDICTED: late embryogenesis abundant protein 1-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006350.1	CmoCh08G006350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..34 score: 6.3E-27coord: 50..105 score: 6.3
None	No IPR available	PANTHER	PTHR34191:SF3	F6D8.10-RELATED	coord: 50..105 score: 6.3E-27coord: 1..34 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G006350	Cucsa.105240	Cucumber (Gy14) v1	cgycmoB0239
CmoCh08G006350	CmaCh17G008430	Cucurbita maxima (Rimu)	cmacmoB367
CmoCh08G006350	CmaCh08G006690	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G006350	Cla015385	Watermelon (97103) v1	cmowmB839
CmoCh08G006350	Csa7G433240	Cucumber (Chinese Long) v2	cmocuB906
CmoCh08G006350	MELO3C023400	Melon (DHL92) v3.5.1	cmomeB816
CmoCh08G006350	ClCG09G002700	Watermelon (Charleston Gray)	cmowcgB781
CmoCh08G006350	CSPI07G20820	Wild cucumber (PI 183967)	cmocpiB919
CmoCh08G006350	Lsi02G027310	Bottle gourd (USVL1VR-Ls)	cmolsiB814
CmoCh08G006350	Cp4.1LG17g05830	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G006350	MELO3C023400.2	Melon (DHL92) v3.6.1	cmomedB921
CmoCh08G006350	CsaV3_7G032630	Cucumber (Chinese Long) v3	cmocucB1072
CmoCh08G006350	Cla97C09G164840	Watermelon (97103) v2	cmowmbB912
CmoCh08G006350	Bhi09G000042	Wax gourd	cmowgoB1130
CmoCh08G006350	CsGy7G019060	Cucumber (Gy14) v2	cgybcmoB961
CmoCh08G006350	Carg09569	Silver-seed gourd	carcmoB1378
CmoCh08G006350	Carg18828	Silver-seed gourd	carcmoB1018

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G006350	CmoCh17G008150	Cucurbita moschata (Rifu)	cmocmoB312

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G006350	Melon (DHL92) v3.6.1	cmomedB914
CmoCh08G006350	Silver-seed gourd	carcmoB1379
CmoCh08G006350	Cucumber (Chinese Long) v3	cmocucB1067
CmoCh08G006350	Wax gourd	cmowgoB1100
CmoCh08G006350	Cucurbita moschata (Rifu)	cmocmoB234
CmoCh08G006350	Cucurbita maxima (Rimu)	cmacmoB280
CmoCh08G006350	Wild cucumber (PI 183967)	cmocpiB914
CmoCh08G006350	Cucumber (Chinese Long) v2	cmocuB901
CmoCh08G006350	Melon (DHL92) v3.5.1	cmomeB811
CmoCh08G006350	Melon (DHL92) v3.5.1	cmomeB823
CmoCh08G006350	Watermelon (Charleston Gray)	cmowcgB805
CmoCh08G006350	Cucurbita pepo (Zucchini)	cmocpeB835
CmoCh08G006350	Cucurbita pepo (Zucchini)	cmocpeB839
CmoCh08G006350	Cucurbita pepo (Zucchini)	cmocpeB854
CmoCh08G006350	Bottle gourd (USVL1VR-Ls)	cmolsiB810
CmoCh08G006350	Cucumber (Gy14) v2	cgybcmoB956