Cp4.1LG12g07900 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g07900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 6801657 .. 6802024 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAATGGCAAGCCAACAGGATTTGAGCTGCAAGGCTGGGGAGACTGTTGGACAAGCTCAGGTAAAGAAGGATGAGGTTATGAGCCAAGCAACATCCACCCAGGATGCCCAATCCGCCGCCCAAACTGCCACCGACCTGAAGGACCAAGCTGCCAGCTTCCTCCAACAGGCAATTACTTGTCATTTTCACTACTTTCACTGACAAGAATGGCTGTGTTTTTTTTTTAATTTGTCGTGTGTTTGTGTAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACGACAATCCTTCCCCTACAATT

mRNA sequence

AGAAATGGCAAGCCAACAGGATTTGAGCTGCAAGGCTGGGGAGACTGTTGGACAAGCTCAGGTAAAGAAGGATGAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACGACAATCCTTCCCCTACAATT

Coding sequence (CDS)

ATGGCAAGCCAACAGGATTTGAGCTGCAAGGCTGGGGAGACTGTTGGACAAGCTCAGGTAAAGAAGGATGAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACGACAATCCTTCCCCTACAATT

Protein sequence

MASQQDLSCKAGETVGQAQVKKDETGEQVKSMAQGAAEAVKNTLGMKTDTDTTTSPNDNPSPTI
BLAST of Cp4.1LG12g07900 vs. TrEMBL
Match: A0A0A0K8V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.8e-07
Identity = 45/91 (49.45%), Postives = 51/91 (56.04%), Query Frame = 1

Query: 1  MASQQDLSCKAGETVGQAQVKKDE------------------------------TGEQVK 60
          MAS QDLS KA E VGQAQVK+DE                              TGEQVK
Sbjct: 1  MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61 SMAQGAAEAVKNTLGMKTDTDTTTSPNDNPS 62
          +MAQGAAEAVKNTLGM TD  + T+ + NP+
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNTNTH-NPA 90

BLAST of Cp4.1LG12g07900 vs. NCBI nr
Match: gi|659122328|ref|XP_008461082.1| (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-08
Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 1  MASQQD-LSCKAGETVGQAQVKKDE-----------------------------TGEQVK 60
          MAS QD LS KAGETVGQAQVKKDE                             TGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 SMAQGAAEAVKNTLGMKTDTDTTTSPNDNPSPT 64
          +MAQGAAEAVKNTLGM  +TD T++PN N +PT
Sbjct: 61 NMAQGAAEAVKNTLGM--NTDNTSNPNSN-NPT 90

BLAST of Cp4.1LG12g07900 vs. NCBI nr
Match: gi|449436603|ref|XP_004136082.1| (PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 45/91 (49.45%), Postives = 51/91 (56.04%), Query Frame = 1

Query: 1  MASQQDLSCKAGETVGQAQVKKDE------------------------------TGEQVK 60
          MAS QDLS KA E VGQAQVK+DE                              TGEQVK
Sbjct: 1  MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61 SMAQGAAEAVKNTLGMKTDTDTTTSPNDNPS 62
          +MAQGAAEAVKNTLGM TD  + T+ + NP+
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNTNTH-NPA 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8V2_CUCSA6.8e-0749.45Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659122328|ref|XP_008461082.1|5.2e-0854.84PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo][more]
gi|449436603|ref|XP_004136082.1|9.7e-0749.45PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07900.1Cp4.1LG12g07900.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34191FAMILY NOT NAMEDcoord: 1..63
score: 1.1
NoneNo IPR availablePANTHERPTHR34191:SF3F6D8.10-RELATEDcoord: 1..63
score: 1.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07900CsaV3_7G032630Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07900Carg18828Silver-seed gourdcarcpeB1049
Cp4.1LG12g07900Carg09569Silver-seed gourdcarcpeB1424
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07900Wax gourdcpewgoB0208
Cp4.1LG12g07900Cucurbita pepo (Zucchini)cpecpeB108
Cp4.1LG12g07900Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07900Cucurbita pepo (Zucchini)cpecpeB171
Cp4.1LG12g07900Cucurbita pepo (Zucchini)cpecpeB178
Cp4.1LG12g07900Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07900Cucurbita pepo (Zucchini)cpecpeB191
Cp4.1LG12g07900Cucumber (Gy14) v1cgycpeB0229
Cp4.1LG12g07900Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07900Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g07900Cucurbita maxima (Rimu)cmacpeB903
Cp4.1LG12g07900Cucurbita moschata (Rifu)cmocpeB052
Cp4.1LG12g07900Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07900Cucurbita moschata (Rifu)cmocpeB835
Cp4.1LG12g07900Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07900Wild cucumber (PI 183967)cpecpiB131
Cp4.1LG12g07900Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07900Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07900Bottle gourd (USVL1VR-Ls)cpelsiB109
Cp4.1LG12g07900Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07900Bottle gourd (USVL1VR-Ls)cpelsiB127
Cp4.1LG12g07900Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07900Watermelon (Charleston Gray)cpewcgB136
Cp4.1LG12g07900Watermelon (Charleston Gray)cpewcgB148
Cp4.1LG12g07900Watermelon (97103) v1cpewmB131
Cp4.1LG12g07900Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07900Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07900Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07900Silver-seed gourdcarcpeB0183
Cp4.1LG12g07900Silver-seed gourdcarcpeB0209
Cp4.1LG12g07900Silver-seed gourdcarcpeB0280
Cp4.1LG12g07900Silver-seed gourdcarcpeB0811
Cp4.1LG12g07900Silver-seed gourdcarcpeB1356
Cp4.1LG12g07900Cucumber (Chinese Long) v3cpecucB0150