Cp4.1LG12g07900.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g07900.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG12 : 6801657 .. 6802024 (+)
Sequence length	196

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATGGCAAGCCAACAGGATTTGAGCTGCAAGGCTGGGGAGACTGTTGGACAAGCTCAGGTAAAGAAGGATGAGGTTATGAGCCAAGCAACATCCACCCAGGATGCCCAATCCGCCGCCCAAACTGCCACCGACCTGAAGGACCAAGCTGCCAGCTTCCTCCAACAGGCAATTACTTGTCATTTTCACTACTTTCACTGACAAGAATGGCTGTGTTTTTTTTTTAATTTGTCGTGTGTTTGTGTAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACGACAATCCTTCCCCTACAATT

mRNA sequence

AGAAATGGCAAGCCAACAGGATTTGAGCTGCAAGGCTGGGGAGACTGTTGGACAAGCTCAGGTAAAGAAGGATGAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACGACAATCCTTCCCCTACAATT

Coding sequence (CDS)

ATGGCAAGCCAACAGGATTTGAGCTGCAAGGCTGGGGAGACTGTTGGACAAGCTCAGGTAAAGAAGGATGAGACTGGAGAGCAAGTGAAGAGCATGGCACAAGGAGCAGCTGAGGCAGTGAAGAACACACTTGGGATGAAGACTGACACTGATACCACCACCTCACCCAACGACAATCCTTCCCCTACAATT

Protein sequence

MASQQDLSCKAGETVGQAQVKKDETGEQVKSMAQGAAEAVKNTLGMKTDTDTTTSPNDNPSPTI

Homology

[Close]

BLAST of Cp4.1LG12g07900.1 vs. TrEMBL
Match: A0A0A0K8V2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.8e-07
Identity = 45/91 (49.45%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1  MASQQDLSCKAGETVGQAQVKKDE------------------------------TGEQVK 60
          MAS QDLS KA E VGQAQVK+DE                              TGEQVK
Sbjct: 1  MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61 SMAQGAAEAVKNTLGMKTDTDTTTSPNDNPS 62
          +MAQGAAEAVKNTLGM TD  + T+ + NP+
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNTNTH-NPA 90

[Close]

BLAST of Cp4.1LG12g07900.1 vs. NCBI nr
Match: gi|659122328|ref|XP_008461082.1| (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-08
Identity = 51/93 (54.84%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 1  MASQQD-LSCKAGETVGQAQVKKDE-----------------------------TGEQVK 60
          MAS QD LS KAGETVGQAQVKKDE                             TGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 SMAQGAAEAVKNTLGMKTDTDTTTSPNDNPSPT 64
          +MAQGAAEAVKNTLGM  +TD T++PN N +PT
Sbjct: 61 NMAQGAAEAVKNTLGM--NTDNTSNPNSN-NPT 90

[Close]

BLAST of Cp4.1LG12g07900.1 vs. NCBI nr
Match: gi|449436603|ref|XP_004136082.1| (PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 45/91 (49.45%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 1  MASQQDLSCKAGETVGQAQVKKDE------------------------------TGEQVK 60
          MAS QDLS KA E VGQAQVK+DE                              TGEQVK
Sbjct: 1  MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61 SMAQGAAEAVKNTLGMKTDTDTTTSPNDNPS 62
          +MAQGAAEAVKNTLGM TD  + T+ + NP+
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNTNTH-NPA 90

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g07900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g07900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V2_CUCSA	6.8e-07	49.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433240 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g07900.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g07900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122328\|ref\|XP_008461082.1\|	5.2e-08	54.84	PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]	[more]
gi\|449436603\|ref\|XP_004136082.1\|	9.7e-07	49.45	PREDICTED: late embryogenesis abundant protein 2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG12g07900	Cp4.1LG12g07900	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g07900.1:five_prime_utr:001	Cp4.1LG12g07900.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g07900.1:cds:002	Cp4.1LG12g07900.1:cds:002	CDS
Cp4.1LG12g07900.1:cds:001	Cp4.1LG12g07900.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG12g07900.1	Cp4.1LG12g07900.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 1..63 score: 1.1
None	No IPR available	PANTHER	PTHR34191:SF3	F6D8.10-RELATED	coord: 1..63 score: 1.1