Carg18731 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18731
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GAG1At protein
Location	Cucurbita_argyrosperma_scaffold_139 : 390822 .. 392384 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGTCAATTTAGTCCAAAGACGGGACATCAAAAACACCGTAACCAAACGCCCCCAAAGGGTTCACCGAGCATTGAGTAAAACTGGAAGAACACACCATTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGAATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGTTTTTGTTCTTTCCTTTACCGAATTTTGTTTCTGTCACTATTATCGCTGATGATCGTTTGTTGCTGCTGAGAGGAATTGATGCGGAAAAGCAGATTTGAACTCGTCGAGTCGTTTTTTTTTTTTTTTTTTGCCCGGGATTTGAAGAAGGGATACGTTTAAATATTGACGTGTGCTGTGCACTAAGAAGATTTCGATTCTTGAATGGAGTTCTGTTTTAAAATTACTTCTTAGTTTTGCTTGAAAACCGAACAGGGAACTCAACAATCTTTGGATTGCAATGGTGGGGATCGGGGTGTTCACTTTTTCGTTGTGTAATTTAGGGTTTCAGAATCTGGGGAGCTTCGATACGATATGTTTAATCTTTTTGGCCTTTGGCACTGGGTGAATTAGGGTTTAGAAATTTTACGTTTTGCTGTTGGGGTTATTCTGCAATTTGGAATGAGGAATGGTAGCTTATCGGGGCAATATTGTTGAGGATTTGATGATACTGATTTTTTAACTTCAGAATTGTTCCAATAGAAATCAAAAGTGATGCCTTGGGGCTGTATGGGAAGTGCTCTAGAGTAACATATTGATGAAAATGTTACTTTTAGATTGTTTTCATGGTCGATTTGGTTGTAGCTAAACTGAAGTTCTTCCTTATAAGATCATAGGCGAGTAAGTAGTGTCGATTAAACTGCTGGTGTATATACTTGATCTAAGAGGCAGAGATTCAAATCTTCCACCCCACAAGTTGTTGAACTTACAAAAAAAACTTACGAGACTTTTGCCCCCACTCTAATTTTCCCATAAGTCAAATAGGATCGAAAGTTGGACTATTTCCTTACCTAAAGGCAAGCAAGCCTCATCTGCTTTACTTTGTGAAATCAGGTCAGGGAATAGAATCAAAGGTTTAGGAGCAAACAAACCTATGCTAATTGCTAACATGACGATGGCTCTCGGGAAAGGGTAGAGTATGCCTACATTCAATCTTTACACACATGATGGTAAAGCTAGGTTATCGATGATTCTACAATAGGCGGCTACTACGTAAATAGATAAAAGCCCCCAAACACACTGCTACGTAAATCTATTTGAGGCTTTATTTAAAATCGACATGACTCATCATCACCACTTAATTGTTTGCAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTTTTCTTTAATTTTTTATTGCTCGTTTTGAGTTTGTTATGATAGAGA

mRNA sequence

AAGAGTCAATTTAGTCCAAAGACGGGACATCAAAAACACCGTAACCAAACGCCCCCAAAGGGTTCACCGAGCATTGAGTAAAACTGGAAGAACACACCATTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGAATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTTTTCTTTAATTTTTTATTGCTCGTTTTGAGTTTGTTATGATAGAGA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGAATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQDYMERADKARSQRLSSGSSSAK

Homology

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_022953259.1 (uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 uncharacterized protein LOC111806650 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 6.0e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_022992483.1 (uncharacterized protein LOC111488802 [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSG+AKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_004135879.1 (PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 8.1e-34
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_008461185.1 (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRME+YLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. NCBI nr
Match: XP_011073320.1 (uncharacterized protein LOC105158304 [Sesamum indicum])

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MSGEAK---SGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKH 60
          MSG+ K   +G  + GGGGFR+ +EHYLYSGEKKHVAAGI VIG++FGIPW LMNRGSKH
Sbjct: 1  MSGDTKKAGNGSGVAGGGGFRATLEHYLYSGEKKHVAAGIAVIGVLFGIPWYLMNRGSKH 60

Query: 61 QSHQDYMERADKARSQRLSSGSS 81
          QSHQDY+ERADKARS+RLS+GSS
Sbjct: 61 QSHQDYLERADKARSERLSAGSS 83

[Close]

BLAST of Carg18731 vs. TAIR10
Match: AT1G16000.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.1e-16
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MSGEAKSGG---SIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKH 58
          M  E K+ G   S+ GGGGFR++MEHY+YSGEKKHV  GI ++ IIFG+PW LM +GSKH
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKH 60

[Close]

BLAST of Carg18731 vs. TAIR10
Match: AT1G80890.1 (unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-16
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQ 59
          M  E+KS     GGGG R++MEHY+YSGEKKHV AGI +I IIFGIPW LMN+GSKH+
Sbjct: 1  MGNESKSN---LGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHR 55

[Close]

BLAST of Carg18731 vs. TrEMBL
Match: tr|A0A1S3CEK3|A0A1S3CEK3_CUCME (uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.1e-34
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRME+YLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. TrEMBL
Match: tr|A0A2H5PSY0|A0A2H5PSY0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_164320 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.8e-27
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MSGEAKSGGSIGG-GGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G+ GG GGGFR++MEHYLYSG+KKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHYLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

[Close]

BLAST of Carg18731 vs. TrEMBL
Match: tr|A0A2I4FP73|A0A2I4FP73_9ROSI (uncharacterized protein LOC109000866 OS=Juglans regia OX=51240 GN=LOC109000866 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MS +AKS G    GG FRSR+EHYLYSG+KKHVAAGI +I  IFG+PW LM+RG+KHQSH
Sbjct: 1  MSSDAKSNGGGFSGGRFRSRVEHYLYSGDKKHVAAGIAIITAIFGVPWFLMSRGTKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Carg18731 vs. TrEMBL
Match: tr|V4SPP9|V4SPP9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026865mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MSGEAKSGGSIGG-GGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G+ GG GGGFR++MEH+LYSG+KKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

[Close]

BLAST of Carg18731 vs. TrEMBL
Match: tr|A0A2G9G6D9|A0A2G9G6D9_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26626 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.0e-26
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MSGEAK-----SGGSIGGG-GGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRG 60
          MSG+AK     SGG  G G GGFR++++HYLYSGEKKHVAAGI +IG+IFG+PW LMNRG
Sbjct: 1  MSGDAKKPSNGSGGGSGPGIGGFRAKLDHYLYSGEKKHVAAGIAIIGVIFGVPWYLMNRG 60

Query: 61 SKHQSHQDYMERADKARSQRLSSGSS 81
          +KHQSHQDY+ERADKARS+RLS+GSS
Sbjct: 61 AKHQSHQDYLERADKARSERLSAGSS 86

The following BLAST results are available for this feature:

BLAST of Carg18731 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953259.1	6.0e-37	100.00	uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 unchar...	[more]
XP_022992483.1	1.3e-36	98.80	uncharacterized protein LOC111488802 [Cucurbita maxima]	[more]
XP_004135879.1	8.1e-34	91.57	PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus]	[more]
XP_008461185.1	1.4e-33	91.57	PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo]	[more]
XP_011073320.1	5.6e-27	75.90	uncharacterized protein LOC105158304 [Sesamum indicum]	[more]

BLAST of Carg18731 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16000.1	7.1e-16	61.67	unknown protein	[more]
AT1G80890.1	9.2e-16	67.24	unknown protein	[more]

BLAST of Carg18731 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18731 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEK3\|A0A1S3CEK3_CUCME	9.1e-34	91.57	uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=...	[more]
tr\|A0A2H5PSY0\|A0A2H5PSY0_CITUN	4.8e-27	77.38	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_164320 PE=4 SV=1	[more]
tr\|A0A2I4FP73\|A0A2I4FP73_9ROSI	1.1e-26	78.31	uncharacterized protein LOC109000866 OS=Juglans regia OX=51240 GN=LOC109000866 P...	[more]
tr\|V4SPP9\|V4SPP9_9ROSI	1.8e-26	76.19	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026865mg PE=4 ...	[more]
tr\|A0A2G9G6D9\|A0A2G9G6D9_9LAMI	7.0e-26	73.26	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26626 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18731-RA	Carg18731-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..83
None	No IPR available	PANTHER	PTHR35990	FAMILY NOT NAMED	coord: 1..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18731	Cla015318	Watermelon (97103) v1	carwmB0345
Carg18731	Csa7G431950	Cucumber (Chinese Long) v2	carcuB0387
Carg18731	MELO3C023472	Melon (DHL92) v3.5.1	carmeB0359
Carg18731	ClCG09G003380	Watermelon (Charleston Gray)	carwcgB0346
Carg18731	CSPI07G20070	Wild cucumber (PI 183967)	carcpiB0391
Carg18731	Cucsa.105950	Cucumber (Gy14) v1	carcgyB0414
Carg18731	CmaCh17G009010	Cucurbita maxima (Rimu)	carcmaB0497
Carg18731	CmoCh17G008720	Cucurbita moschata (Rifu)	carcmoB0480
Carg18731	Lsi02G026630	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18731	Cp4.1LG12g07310	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18731	CsGy7G018350	Cucumber (Gy14) v2	carcgybB0366
Carg18731	MELO3C023472.2	Melon (DHL92) v3.6.1	carmedB0364
Carg18731	CsaV3_7G031850	Cucumber (Chinese Long) v3	carcucB0390
Carg18731	Cla97C09G165610	Watermelon (97103) v2	carwmbB0371
Carg18731	Bhi09G000438	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18731	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18731	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18731	Wild cucumber (PI 183967)	carcpiB0390
Carg18731	Cucumber (Chinese Long) v2	carcuB0386
Carg18731	Cucumber (Chinese Long) v3	carcucB0389
Carg18731	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18731	Melon (DHL92) v3.5.1	carmeB0360
Carg18731	Watermelon (Charleston Gray)	carwcgB0347
Carg18731	Watermelon (97103) v1	carwmB0346
Carg18731	Watermelon (97103) v2	carwmbB0369
Carg18731	Wax gourd	carwgoB0437
Carg18731	Silver-seed gourd	carcarB379
Carg18731	Silver-seed gourd	carcarB383
Carg18731	Cucumber (Gy14) v2	carcgybB0365
Carg18731	Cucurbita maxima (Rimu)	carcmaB0496
Carg18731	Cucurbita maxima (Rimu)	carcmaB0498
Carg18731	Cucurbita maxima (Rimu)	carcmaB0499
Carg18731	Cucurbita moschata (Rifu)	carcmoB0479
Carg18731	Cucurbita moschata (Rifu)	carcmoB0481
Carg18731	Cucurbita moschata (Rifu)	carcmoB0482