Csa7G431950 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G431950
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 16998807 .. 17000475 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTAGATATTTTATAAGGAAGTAAAGAAAGTCAATTTAGTCCAAAAGTTTGGAGTCCAAAATCACCGTAACCAAAACGCTCCCAAAAGGTGAGCAAAACCGGCGGTGGAGAGAACTGGAAGAACACATCTTTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAAAGCGGGGGGGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCTGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGTTTTTGTTCTTTCCTTTAACAATTTTTATTTTTCTTACTCTATCTCCGATGATTGTTTGTTGCTGTTGAGAGAAATTGATGTGGGGAAACAATTTTTTTCCCGGGATTTGGAGAAGGGAGGGTTTTAAATATTGACGTATGAAGTGCACTAAGAAGATATTGATTCTTGAGTTCCTTTTTAAACTTGTTAGTTTTTCTTGGGGAATTCAGCACTCTTTTGATTGCAACAGTGGACATTTGGAAGTATGTTCGATTTTCCAATGTGTAATTTAGGGTTTCAGAATCTTTGCAGCTTCAATAAGATATGCACAAGCTTTGTCTTGTTTGCCTTTGGCAATTGGTACTCGGTGGATTAGGATTTAGGATTTGCAAGTTCTGCTGGTTGGGTGCTCCTGTGATTTGGGAATGAGAAACTCTAGTCTATCAGGGTAATATCATTGTGGATTTTTATGATACTGATTTTTTTTACTTCAGAACTGTTGAAACTGGATCTGATGGTTGTGCTTTAGAACAATATATTTGAGTGATTATGTCTTCATAAACAAACACCTCACTCTTAGATTGTTTTCATGGTTGACTTGGTTTAGCTAAACTGAAGTGATTATTTCTCATAAGATAAGATCATAGGCTCATAAATAGTGCTAATGTGATTCCGTAAGCATAACTCAATTACTTTAGGCATCTATATCAATCAAGTGATTACATGTTCAAATCCTCCAACCTCACATGTTGAGCTAAAGAAAATGCTCGTAATTAGTAAGTTTAGTAAGAGCCACCCAAAATACCTCTTGAAAATAGTTGTCAAAATATGTAGTCTTGAAAATACTTTTTGCATCATATAGTTTGAAAACTATTTTTCGAAGAAATTTCCAAATGACCCCTACACATGAAGTAGAAGTGACACTTCGCAAGTCAATAGGTGGTGAAACAAGAATCTGTCCCTTTTTCCTCTTTTCCATACAGATTTGAGGCTGTGTTTTATTTCCATATGAGTTGTAGGAGGTTGTAATTCTACATGACTTATCCCTACTTAATTGTTTGCACTCAGGATCAAAACATCGGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTCTTTTTGGCTTTCTTCTGATTGAGGATGTTCTTTCGGGCACTTGATTAGCATAAATTTTTTGTAGTAGCTCCTATATCTTGCATTTCCCCCCTCCCTCACGTGACATTAAATCAAGAGAACATATACTCACTAAGGTACACTTGTGGTTATGAAATAAATGACGGATTTACTTTTTTTTTGGGTTTCCTTTTACCTCGC

mRNA sequence

ATGAGCGGCGAGGCCAAAAGCGGGGGGGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCTGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGATCAAAACATCGGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAAAGCGGGGGGGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCTGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGATCAAAACATCGGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSHQDYMERADKARSQRLSSGSSSAK*

Homology

[Close]

BLAST of Csa7G431950 vs. TrEMBL
Match: A0A0A0K8K9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431950 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 8.4e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRASIRYAQ 60
          MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRASIRYAQ
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRASIRYAQ 60

Query: 61 ALSCLPLAIGTRWIRI 77
          ALSCLPLAIGTRWIRI
Sbjct: 61 ALSCLPLAIGTRWIRI 76

[Close]

BLAST of Csa7G431950 vs. TrEMBL
Match: W9QVG6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-14
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 2   SGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
           SG    GG SGG GGFR+R++HYLYSG+KKHVAAGI I  I+FGIPW LMNR S
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGS 138

[Close]

BLAST of Csa7G431950 vs. TrEMBL
Match: A0A059AKH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03118 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.0e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          M+ EAK+ G  GGAGGFR+R++H+LYSGDKKHV AGI +  ++FG+PW LMNR S
Sbjct: 1  MASEAKAKGGGGGAGGFRARVDHFLYSGDKKHVLAGITVISLVFGVPWFLMNRGS 55

[Close]

BLAST of Csa7G431950 vs. TrEMBL
Match: A0A0D3CVQ9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 1  MSGEAKSGGAS---GGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          M  E KS GAS   GG GGFR++MEHY+YSG+KKHV AGI IF +IFGIPW LMNR S
Sbjct: 1  MGNETKSNGASSLGGGGGGFRAKMEHYVYSGEKKHVLAGIGIFTVIFGIPWYLMNRGS 58

[Close]

BLAST of Csa7G431950 vs. TrEMBL
Match: A0A078CR59_BRANA (BnaC06g19580D protein OS=Brassica napus GN=BnaC06g19580D PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 1  MSGEAKSGGAS---GGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          M  E KS GAS   GG GGFR++MEHY+YSG+KKHV AGI IF +IFGIPW LMNR S
Sbjct: 1  MGNETKSNGASSLGGGGGGFRAKMEHYVYSGEKKHVLAGIGIFTVIFGIPWYLMNRGS 58

[Close]

BLAST of Csa7G431950 vs. TAIR10
Match: AT1G80890.1 (AT1G80890.1 unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          M  E+KS   + G GG R++MEHY+YSG+KKHV AGI I  IIFGIPW LMN+ S
Sbjct: 1  MGNESKS---NLGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGS 52

[Close]

BLAST of Csa7G431950 vs. TAIR10
Match: AT1G16000.1 (AT1G16000.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 1  MSGEAKSGG---ASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          M  E K+ G   +  G GGFR++MEHY+YSG+KKHV  GI I  IIFG+PW LM + S
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGS 58

[Close]

BLAST of Csa7G431950 vs. NCBI nr
Match: gi|700189981|gb|KGN45214.1| (hypothetical protein Csa_7G431950 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRASIRYAQ 60
          MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRASIRYAQ
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRASIRYAQ 60

Query: 61 ALSCLPLAIGTRWIRI 77
          ALSCLPLAIGTRWIRI
Sbjct: 61 ALSCLPLAIGTRWIRI 76

[Close]

BLAST of Csa7G431950 vs. NCBI nr
Match: gi|449436195|ref|XP_004135879.1| (PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNR S
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGS 55

[Close]

BLAST of Csa7G431950 vs. NCBI nr
Match: gi|659122517|ref|XP_008461185.1| (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          MSGEAKSGGASGGAGGFRSRME+YLYSGDKKHVAAGIVIFGIIFGIPWALMNR S
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGS 55

[Close]

BLAST of Csa7G431950 vs. NCBI nr
Match: gi|703090334|ref|XP_010094051.1| (hypothetical protein L484_018067 [Morus notabilis])

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-14
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 2   SGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
           SG    GG SGG GGFR+R++HYLYSG+KKHVAAGI I  I+FGIPW LMNR S
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGS 138

[Close]

BLAST of Csa7G431950 vs. NCBI nr
Match: gi|702484667|ref|XP_010034035.1| (PREDICTED: uncharacterized protein LOC104423231 [Eucalyptus grandis])

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRAS 56
          M+ EAK+ G  GGAGGFR+R++H+LYSGDKKHV AGI +  ++FG+PW LMNR S
Sbjct: 1  MASEAKAKGGGGGAGGFRARVDHFLYSGDKKHVLAGITVISLVFGVPWFLMNRGS 55

The following BLAST results are available for this feature:

BLAST of Csa7G431950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8K9_CUCSA	8.4e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431950 PE=4 SV=1	[more]
W9QVG6_9ROSA	2.4e-14	70.37	Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1	[more]
A0A059AKH7_EUCGR	4.0e-14	63.64	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03118 PE=4 SV=1	[more]
A0A0D3CVQ9_BRAOL	1.2e-13	68.97	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078CR59_BRANA	1.2e-13	68.97	BnaC06g19580D protein OS=Brassica napus GN=BnaC06g19580D PE=4 SV=1	[more]

BLAST of Csa7G431950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80890.1	6.8e-13	61.82	unknown protein	[more]
AT1G16000.1	1.5e-12	55.17	unknown protein	[more]

BLAST of Csa7G431950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189981\|gb\|KGN45214.1\|	1.2e-35	100.00	hypothetical protein Csa_7G431950 [Cucumis sativus]	[more]
gi\|449436195\|ref\|XP_004135879.1\|	1.5e-22	98.18	PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus]	[more]
gi\|659122517\|ref\|XP_008461185.1\|	7.5e-22	96.36	PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo]	[more]
gi\|703090334\|ref\|XP_010094051.1\|	3.4e-14	70.37	hypothetical protein L484_018067 [Morus notabilis]	[more]
gi\|702484667\|ref\|XP_010034035.1\|	5.8e-14	63.64	PREDICTED: uncharacterized protein LOC104423231 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU101896	cucumber EST collection version 3.0	transcribed_cluster
CU143711	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G431950.2	Csa7G431950.2	mRNA
Csa7G431950.1	Csa7G431950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU143711	CU143711	transcribed_cluster
CU101896	CU101896	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35990	FAMILY NOT NAMED	coord: 1..83 score: 9.1
None	No IPR available	PANTHER	PTHR35990:SF1	GAG1AT PROTEIN	coord: 1..83 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G431950	Carg18731	Silver-seed gourd	carcuB0387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G431950	Silver-seed gourd	carcuB0484
Csa7G431950	Watermelon (97103) v2	cuwmbB570
Csa7G431950	Wax gourd	cuwgoB704
Csa7G431950	Cucumber (Chinese Long) v2	cucuB127
Csa7G431950	Cucumber (Chinese Long) v2	cucuB150
Csa7G431950	Cucumber (Gy14) v1	cgycuB126
Csa7G431950	Cucumber (Gy14) v1	cgycuB388
Csa7G431950	Cucurbita maxima (Rimu)	cmacuB388
Csa7G431950	Cucurbita maxima (Rimu)	cmacuB502
Csa7G431950	Cucurbita maxima (Rimu)	cmacuB914
Csa7G431950	Cucurbita moschata (Rifu)	cmocuB378
Csa7G431950	Cucurbita moschata (Rifu)	cmocuB490
Csa7G431950	Cucurbita moschata (Rifu)	cmocuB900
Csa7G431950	Melon (DHL92) v3.5.1	cumeB521
Csa7G431950	Melon (DHL92) v3.5.1	cumeB563
Csa7G431950	Watermelon (Charleston Gray)	cuwcgB524
Csa7G431950	Watermelon (97103) v1	cuwmB566
Csa7G431950	Watermelon (97103) v1	cuwmB589
Csa7G431950	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G431950	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G431950	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G431950	Cucumber (Gy14) v2	cgybcuB323
Csa7G431950	Melon (DHL92) v3.6.1	cumedB501
Csa7G431950	Melon (DHL92) v3.6.1	cumedB540