Cla015318 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015318
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Os12g0556400 protein (Fragment) (AHRD V1 ***- Q0IMP3_ORYSJ)
Location	Chr9 : 2480432 .. 2481690 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGCGAGGCTAAAAGCGGCGGCGGGAGCGGCGGAGGAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGACAAAAAGCACGTCGCCGCTGGGATAGTCGTCATTGGTATCATCTTCGGCATCCCTTGGGCCCTCATGAATCGAGGTTTTTGTTCATTCCTTTACCAATTTCTGTTTCTTTTCATCTATCTCTGATGATTGTTTGTTGCTGCTGAGAGAAATTGATATGTAGGAAAACCGTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTAATTTTATTTTGCCCGGGATTTGAAGAAGGGAGACCTATATTTTTATTTTGCACTAAGAAGATTTTGATTCTTGAATGGAGTTCTATTTTAAAGTTACTTCTAAGTTTTGCTTGAAGATCGAACAAAGAATTCAGCAATCTTTGGATTGCAACAGTGGACGTCTAGGGTTTCAGAGTCTATGCAGCTTCAATAAAATATGCATATGCATAGTCTTTTTGGCCCTTGGCACTGGGTGGATTAGGGTTTAGGAATTGTGGCTTTTGCTGTTGGAGTGCTCCTGTAATTTGGAATGAGAAACGGTGGGGCAATATCGTTGTGGATTTTGATGATACTGATTCTTTTTAATTTCAGAAATGTTCCAAGAGAAATAAAAAAGAAGGTTGTTACTCAGCTTACTCTTAGATTGTTTCATGGTTGACTTGGTTTAGCTAAACTGAAGTTATACTCTCTCGTAAGATCATAAGATGATAGGCTCGTAAATAGTGCCAATGTGAGCATAACTCAACTGGTTTTGGTATATATCTCAACCAAGAGATTAGAGGTTCAAATTTTCCAACCTCACATGTTGTTGAACTAAAAAAAATGCTCGTAATTAGTCAGTTTAATAAGAGCCCCCCAAAATACCTCTTCGGTTTTGGAAACATATAATCTTAAAAATAGTTTTTGAATCATATAGTTTAAAGACTATTTTTCGAAACAACTTCCGAATGGCACCTACACTTATAATATAAGTATTAACCCTTTGAAAATCTAATAGGTGGTAAAACAAGATGCTTCCTTTGTTCCTCGTTGGCATTCAAATCTACAGCCCCATACATCTATTTGAGGCTGTATTTAAATTCGATATGACTTATCACTACTTAATTGTTTTCACTGCAGGATCAAAACATCAGTCGCATCAAGACTATATGGAAAGAGCTGATAAAGCTCGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

mRNA sequence

ATGAGCGGCGAGGCTAAAAGCGGCGGCGGGAGCGGCGGAGGAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGACAAAAAGCACGTCGCCGCTGGGATAGTCGTCATTGGTATCATCTTCGGCATCCCTTGGGCCCTCATGAATCGAGGATCAAAACATCAGTCGCATCAAGACTATATGGAAAGAGCTGATAAAGCTCGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Coding sequence (CDS)

ATGAGCGGCGAGGCTAAAAGCGGCGGCGGGAGCGGCGGAGGAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGACAAAAAGCACGTCGCCGCTGGGATAGTCGTCATTGGTATCATCTTCGGCATCCCTTGGGCCCTCATGAATCGAGGATCAAAACATCAGTCGCATCAAGACTATATGGAAAGAGCTGATAAAGCTCGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQDYMERADKARSQRLSSGSSSAK

Homology

[Close]

BLAST of Cla015318 vs. TrEMBL
Match: W9QVG6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-32
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 2   SGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQ 61
           SG    GGGSGGGGGFR+R++HYLYSG+KKHVAAGI +I I+FGIPW LMNRGSKHQSHQ
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGSKHQSHQ 144

Query: 62  DYMERADKARSQRLSSGSSSAK 84
           DY+E+ADKARSQRLSSGSSSAK
Sbjct: 145 DYLEKADKARSQRLSSGSSSAK 166

[Close]

BLAST of Cla015318 vs. TrEMBL
Match: V4SPP9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026865mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-29
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 1  MSGEAKSGGGSGG-GGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G +GG GGGFR++MEH+LYSGDKKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

[Close]

BLAST of Cla015318 vs. TrEMBL
Match: A0A067EN80_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034759mg PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.2e-29
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 1  MSGEAKSGGGSGG-GGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G +GG GGGFR++MEH+LYSGDKKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS  SSAK
Sbjct: 61 HQDYLERADKARSERLSSSPSSAK 84

[Close]

BLAST of Cla015318 vs. TrEMBL
Match: A0A059AKH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03118 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-28
Identity = 59/79 (74.68%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 1  MSGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          M+ EAK+ GG GG GGFR+R++H+LYSGDKKHV AGI VI ++FG+PW LMNRGSKHQSH
Sbjct: 1  MASEAKAKGGGGGAGGFRARVDHFLYSGDKKHVLAGITVISLVFGVPWFLMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGS 80
          QDYMERADKAR++RLSS S
Sbjct: 61 QDYMERADKARNERLSSSS 79

[Close]

BLAST of Cla015318 vs. TrEMBL
Match: A0A068TSD1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022264001 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.5e-27
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 2  SGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQ 61
          SG  K GGG+GG   FR++++HYLYSG+KKHV AGI +IG++FG+PW LMN+GSKHQSHQ
Sbjct: 9  SGSKKIGGGNGG---FRAKLDHYLYSGEKKHVIAGIAIIGVLFGVPWYLMNKGSKHQSHQ 68

Query: 62 DYMERADKARSQRLSSGSSSA 83
          DYMERADKARS+RLS GSS+A
Sbjct: 69 DYMERADKARSERLSKGSSAA 86

[Close]

BLAST of Cla015318 vs. NCBI nr
Match: gi|449436195|ref|XP_004135879.1| (PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-37
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MSGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG SGG GGFRSRMEHYLYSGDKKHVAAGIV+ GIIFGIPWALMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Cla015318 vs. NCBI nr
Match: gi|659122517|ref|XP_008461185.1| (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-37
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MSGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG SGG GGFRSRME+YLYSGDKKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Cla015318 vs. NCBI nr
Match: gi|703090334|ref|XP_010094051.1| (hypothetical protein L484_018067 [Morus notabilis])

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-32
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 2   SGEAKSGGGSGGGGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQ 61
           SG    GGGSGGGGGFR+R++HYLYSG+KKHVAAGI +I I+FGIPW LMNRGSKHQSHQ
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGSKHQSHQ 144

Query: 62  DYMERADKARSQRLSSGSSSAK 84
           DY+E+ADKARSQRLSSGSSSAK
Sbjct: 145 DYLEKADKARSQRLSSGSSSAK 166

[Close]

BLAST of Cla015318 vs. NCBI nr
Match: gi|1009112395|ref|XP_015868068.1| (PREDICTED: uncharacterized protein LOC107405511 [Ziziphus jujuba])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MSGEAKS----GGGSGGG--GGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRG 60
          MS EAK+    GGG GGG  GGFR+RM+HYLYSGDKKHV AGI VI ++FGIPW LMNRG
Sbjct: 1  MSSEAKTNGRTGGGGGGGKVGGFRARMDHYLYSGDKKHVLAGIAVISLVFGIPWVLMNRG 60

Query: 61 SKHQSHQDYMERADKARSQRLSSGSSSAK 84
          SKHQSHQDY+E+ADKARS+RLSSGS  AK
Sbjct: 61 SKHQSHQDYLEKADKARSERLSSGSPPAK 89

[Close]

BLAST of Cla015318 vs. NCBI nr
Match: gi|567870057|ref|XP_006427650.1| (hypothetical protein CICLE_v10026865mg [Citrus clementina])

HSP 1 Score: 136.0 bits (341), Expect = 3.1e-29
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 1  MSGEAKSGGGSGG-GGGFRSRMEHYLYSGDKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G +GG GGGFR++MEH+LYSGDKKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

The following BLAST results are available for this feature:

BLAST of Cla015318 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QVG6_9ROSA	2.7e-32	81.71	Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1	[more]
V4SPP9_9ROSI	2.1e-29	77.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026865mg PE=4 SV=1	[more]
A0A067EN80_CITSI	8.2e-29	76.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034759mg PE=4 SV=1	[more]
A0A059AKH7_EUCGR	1.8e-28	74.68	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03118 PE=4 SV=1	[more]
A0A068TSD1_COFCA	4.5e-27	71.60	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022264001 PE=4 SV=1	[more]

BLAST of Cla015318 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436195\|ref\|XP_004135879.1\|	3.1e-37	93.98	PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus]	[more]
gi\|659122517\|ref\|XP_008461185.1\|	5.2e-37	93.98	PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo]	[more]
gi\|703090334\|ref\|XP_010094051.1\|	3.9e-32	81.71	hypothetical protein L484_018067 [Morus notabilis]	[more]
gi\|1009112395\|ref\|XP_015868068.1\|	1.8e-29	75.28	PREDICTED: uncharacterized protein LOC107405511 [Ziziphus jujuba]	[more]
gi\|567870057\|ref\|XP_006427650.1\|	3.1e-29	77.38	hypothetical protein CICLE_v10026865mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU40991	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015318	Cla015318.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU40991	WMU40991	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35990	FAMILY NOT NAMED	coord: 1..83 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015318	Cla97C09G165610	Watermelon (97103) v2	wmwmbB041
Cla015318	MELO3C023472	Melon (DHL92) v3.5.1	mewmB198
Cla015318	ClCG09G003380	Watermelon (Charleston Gray)	wcgwmB007
Cla015318	CSPI07G20070	Wild cucumber (PI 183967)	cpiwmB585
Cla015318	Cucsa.105950	Cucumber (Gy14) v1	cgywmB142
Cla015318	CmaCh17G009010	Cucurbita maxima (Rimu)	cmawmB328
Cla015318	CmoCh17G008720	Cucurbita moschata (Rifu)	cmowmB322
Cla015318	Lsi02G026630	Bottle gourd (USVL1VR-Ls)	lsiwmB176
Cla015318	Cp4.1LG12g07310	Cucurbita pepo (Zucchini)	cpewmB131
Cla015318	CsGy7G018350	Cucumber (Gy14) v2	cgybwmB528
Cla015318	MELO3C023472.2	Melon (DHL92) v3.6.1	medwmB194
Cla015318	Carg18731	Silver-seed gourd	carwmB0345
Cla015318	CsaV3_7G031850	Cucumber (Chinese Long) v3	cucwmB591
Cla015318	Bhi09G000438	Wax gourd	wgowmB583

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015318	Cucurbita maxima (Rimu)	cmawmB857
Cla015318	Cucurbita moschata (Rifu)	cmowmB212
Cla015318	Cucurbita moschata (Rifu)	cmowmB403
Cla015318	Cucurbita moschata (Rifu)	cmowmB844
Cla015318	Wild cucumber (PI 183967)	cpiwmB192
Cla015318	Wild cucumber (PI 183967)	cpiwmB290
Cla015318	Melon (DHL92) v3.5.1	mewmB491
Cla015318	Watermelon (Charleston Gray)	wcgwmB050
Cla015318	Cucumber (Chinese Long) v2	cuwmB288
Cla015318	Cucumber (Chinese Long) v2	cuwmB566
Cla015318	Cucurbita pepo (Zucchini)	cpewmB312
Cla015318	Cucurbita pepo (Zucchini)	cpewmB536
Cla015318	Silver-seed gourd	carwmB0451
Cla015318	Watermelon (97103) v2	wmwmbB015
Cla015318	Wax gourd	wgowmB006
Cla015318	Watermelon (97103) v1	wmwmB023
Cla015318	Cucumber (Gy14) v1	cgywmB495
Cla015318	Cucurbita maxima (Rimu)	cmawmB226
Cla015318	Cucurbita maxima (Rimu)	cmawmB408