CSPI07G20070 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G20070
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	GAG1At protein
Location	Chr7 : 17537150 .. 17538870 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCATGTTAAATGATATAATGTAAAAATAAGATTTTGAAAGTTTAGAGGTTATTAGATATTTTATAAGGAAGTAAAGAAAGTCAATTTAGTCCAAAAGTTTGGAGACCAAAATCACCGTAACCAAAACGCTCCCAAAAGGTGAGCAAAATCGGCGGTGGAGAGAACTGGAAGAACACATCTTTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAAAGCGGGGGAGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCTGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGTTTTTGTTCTTTCCTTTAACAATTTTTGTTTTTCTTACTCTATCTCCGATGATTGTTTGTTGCTGTTGAGAGAAATTGATGTGGGGAAACAATTTTTTTCCCGGGATTTGGAGAAGGGAGGGTTTTAAATATTGACGTATGAAGTGCACTAAGAAGATATTGATTCTTGAGTTCCTTTTTAAACTTGTTAGTTTTTCTTGGGGAATTCAGCACTCTTTTGATTGCAACAGTGGACATTTGGAAGTATGTTCGATTTTCCAATGTGTAATTTAGGGTTTCAGAATCTTTGCAGCTTCAATAAGATATGCACATGCTTTGTCTTGTTTGCCTTTGGCAATTGGTACTCGGTGGATTAGGGTTTAGGATTTGCAAGTTCTGCTGGTTGGGTGCTCCTCTGATTTGGGAATGAGAAACTCTAGTCTATCAGGGTAATATCATTGTGGATTTTTATGATACTGATTTTTTTTACTTCAGAACTGCTGGAACTGTATCTGATGGTTGTGCTTTAGAACAATATATTTGAGTGATTATGTCTTCATAAACAAACACCTCACTCTTAGATTGTTTTCATGGTTGACTTGGTTTAGCTAAACTGAAGTGATTATTTCTCATAAGATAAGATCATAGGCTCATAAATAGTGCTAATGTGATTACGTAAGCATAACTCAATTACTTTAGGCATATATATCAATCAAGTGATTACATGTTCAAATCCTCCAACCTCACATGTTGAGCTAAAGAAAATGCTCGTAATTAGTAAGTTTAGTAAGAGCCACCCAAAATACCTTTGAAAATAGTTGTCAAAATATGTAGTCTTGAAAATACTTTTTGAAACATATAGTTTGAAAACTATTTTTCGAAGAAACTTCCAAATGACCCCTACACATGAAGTAGAAGTGACACTTCGCAAGTCAATAGGTGGTGAAACAAGAATCTGTCCCTTTTTCCTCTTTTCCATACAGATTTGAGGCTGTGTTTTATTTCGATATGAGTTGTAGGAGGTTGTAATTCTACATGACTTATCCCTACTTAATTGTTTGCACTCAGGATCAAAACATCGGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTCTTTTCTTTTTGGCTTTCTTCTGATTGAGGATGTTCTTTCGGGCACTTGATTAGCATAAATTTTTTGTAGTAGCTCCTATATCTTGCATTTCCCCCCTCCCTCACGTGACATTAAATCAAGAGAACTTATACTCATCAAGGTACACTTGTGGTTATGAAATAAATGACGGATTTACTTTTTTTTGGGTTTCCTTTTACCTCGCTT

mRNA sequence

ATGAGCGGCGAGGCCAAAAGCGGGGGAGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCTGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGATCAAAACATCGGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAAAGCGGGGGAGCCAGCGGCGGAGCAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTCGCTGCTGGCATCGTCATCTTTGGTATCATCTTCGGCATTCCTTGGGCCCTCATGAATCGAGGATCAAAACATCGGTCTCACCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Homology

[Close]

BLAST of CSPI07G20070 vs. TrEMBL
Match: W9QVG6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.4e-28
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1


Query: 2   SGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSHQ 61
           SG    GG SGG GGFR+R++HYLYSG+KKHVAAGI I  I+FGIPW LMNRGSKH+SHQ
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGSKHQSHQ 144

Query: 62  DYMERADKARSQRLSSGSSSAK 84
           DY+E+ADKARSQRLSSGSSSAK
Sbjct: 145 DYLEKADKARSQRLSSGSSSAK 166

[Close]

BLAST of CSPI07G20070 vs. TrEMBL
Match: V4SPP9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026865mg PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGG-FRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRS 60
          M  E+KS G +GGAGG FR++MEH+LYSGDKKHV AGIVI   IFG+PW LMNRGSKH+S
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

[Close]

BLAST of CSPI07G20070 vs. TrEMBL
Match: A0A067EN80_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034759mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-26
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGG-FRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRS 60
          M  E+KS G +GGAGG FR++MEH+LYSGDKKHV AGIVI   IFG+PW LMNRGSKH+S
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS  SSAK
Sbjct: 61 HQDYLERADKARSERLSSSPSSAK 84

[Close]

BLAST of CSPI07G20070 vs. TrEMBL
Match: A0A059AKH7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03118 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-25
Identity = 56/79 (70.89%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60
          M+ EAK+ G  GGAGGFR+R++H+LYSGDKKHV AGI +  ++FG+PW LMNRGSKH+SH
Sbjct: 1  MASEAKAKGGGGGAGGFRARVDHFLYSGDKKHVLAGITVISLVFGVPWFLMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGS 80
          QDYMERADKAR++RLSS S
Sbjct: 61 QDYMERADKARNERLSSSS 79

[Close]

BLAST of CSPI07G20070 vs. TrEMBL
Match: A0A0E0BTZ4_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-25
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60
          M GEA SGG  GG GGFR+R+EHYLYSG+KKHV AGI IF  IFG+PW LM RG+KH+SH
Sbjct: 1  MGGEATSGG--GGGGGFRARVEHYLYSGEKKHVVAGIAIFAAIFGVPWYLMTRGAKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSA 83
          QDYMERA+KAR +RLSSG SS+
Sbjct: 61 QDYMERANKARLERLSSGQSSS 80

[Close]

BLAST of CSPI07G20070 vs. TAIR10
Match: AT1G80890.1 (AT1G80890.1 unknown protein)

HSP 1 Score: 110.5 bits (275), Expect = 4.9e-25
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60
          M  E+KS   + G GG R++MEHY+YSG+KKHV AGI I  IIFGIPW LMN+GSKHRSH
Sbjct: 1  MGNESKS---NLGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDY+E+ADKAR  RLSS SSS K
Sbjct: 61 QDYLEKADKARKARLSSSSSSDK 80

[Close]

BLAST of CSPI07G20070 vs. TAIR10
Match: AT1G16000.1 (AT1G16000.1 unknown protein)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-23
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MSGEAKSGG---ASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKH 60
          M  E K+ G   +  G GGFR++MEHY+YSG+KKHV  GI I  IIFG+PW LM +GSKH
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKH 60

Query: 61 RSHQDYMERADKARSQRLSSGSSSAK 84
          +SHQDYM++ADKAR  RLSS SS+ K
Sbjct: 61 QSHQDYMDKADKARKARLSSSSSANK 86

[Close]

BLAST of CSPI07G20070 vs. NCBI nr
Match: gi|449436195|ref|XP_004135879.1| (PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60
          MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of CSPI07G20070 vs. NCBI nr
Match: gi|659122517|ref|XP_008461185.1| (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60
          MSGEAKSGGASGGAGGFRSRME+YLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of CSPI07G20070 vs. NCBI nr
Match: gi|703090334|ref|XP_010094051.1| (hypothetical protein L484_018067 [Morus notabilis])

HSP 1 Score: 131.3 bits (329), Expect = 7.7e-28
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1


Query: 2   SGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSHQ 61
           SG    GG SGG GGFR+R++HYLYSG+KKHVAAGI I  I+FGIPW LMNRGSKH+SHQ
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGSKHQSHQ 144

Query: 62  DYMERADKARSQRLSSGSSSAK 84
           DY+E+ADKARSQRLSSGSSSAK
Sbjct: 145 DYLEKADKARSQRLSSGSSSAK 166

[Close]

BLAST of CSPI07G20070 vs. NCBI nr
Match: gi|567870057|ref|XP_006427650.1| (hypothetical protein CICLE_v10026865mg [Citrus clementina])

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGG-FRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRS 60
          M  E+KS G +GGAGG FR++MEH+LYSGDKKHV AGIVI   IFG+PW LMNRGSKH+S
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

[Close]

BLAST of CSPI07G20070 vs. NCBI nr
Match: gi|568880991|ref|XP_006493377.1| (PREDICTED: uncharacterized protein LOC102622532 [Citrus sinensis])

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-26
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 1  MSGEAKSGGASGGAGG-FRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRS 60
          M  E+KS G +GGAGG FR+++EHYLYSGDKKHV AGIVI   IFG+PW LMNRGSKH+S
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKLEHYLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS  SSAK
Sbjct: 61 HQDYLERADKARSERLSSSPSSAK 84

The following BLAST results are available for this feature:

BLAST of CSPI07G20070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G20070 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QVG6_9ROSA	5.4e-28	78.05	Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1	[more]
V4SPP9_9ROSI	1.3e-26	76.19	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026865mg PE=4 SV=1	[more]
A0A067EN80_CITSI	5.0e-26	75.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034759mg PE=4 SV=1	[more]
A0A059AKH7_EUCGR	1.9e-25	70.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03118 PE=4 SV=1	[more]
A0A0E0BTZ4_9ORYZ	7.2e-25	73.17	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]

BLAST of CSPI07G20070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80890.1	4.9e-25	68.67	unknown protein	[more]
AT1G16000.1	2.1e-23	61.63	unknown protein	[more]

BLAST of CSPI07G20070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436195\|ref\|XP_004135879.1\|	1.8e-37	100.00	PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus]	[more]
gi\|659122517\|ref\|XP_008461185.1\|	2.6e-36	97.59	PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo]	[more]
gi\|703090334\|ref\|XP_010094051.1\|	7.7e-28	78.05	hypothetical protein L484_018067 [Morus notabilis]	[more]
gi\|567870057\|ref\|XP_006427650.1\|	1.9e-26	76.19	hypothetical protein CICLE_v10026865mg [Citrus clementina]	[more]
gi\|568880991\|ref\|XP_006493377.1\|	4.2e-26	75.00	PREDICTED: uncharacterized protein LOC102622532 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G20070.1	CSPI07G20070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35990	FAMILY NOT NAMED	coord: 1..83 score: 9.1
None	No IPR available	PANTHER	PTHR35990:SF1	GAG1AT PROTEIN	coord: 1..83 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G20070	Cla015318	Watermelon (97103) v1	cpiwmB585
CSPI07G20070	MELO3C023472	Melon (DHL92) v3.5.1	cpimeB525
CSPI07G20070	ClCG09G003380	Watermelon (Charleston Gray)	cpiwcgB553
CSPI07G20070	Lsi02G026630	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G20070	MELO3C023472.2	Melon (DHL92) v3.6.1	cpimedB512
CSPI07G20070	CsaV3_7G031850	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G20070	Cla97C09G165610	Watermelon (97103) v2	cpiwmbB596
CSPI07G20070	Bhi09G000438	Wax gourd	cpiwgoB716
CSPI07G20070	Cucsa.105950	Cucumber (Gy14) v1	cgycpiB127
CSPI07G20070	CmaCh17G009010	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G20070	CmoCh17G008720	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G20070	Cp4.1LG12g07310	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G20070	CsGy7G018350	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G20070	Carg18731	Silver-seed gourd	carcpiB0391

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G20070	Melon (DHL92) v3.6.1	cpimedB559
CSPI07G20070	Silver-seed gourd	carcpiB0489
CSPI07G20070	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G20070	Wild cucumber (PI 183967)	cpicpiB142
CSPI07G20070	Wild cucumber (PI 183967)	cpicpiB168
CSPI07G20070	Cucumber (Gy14) v1	cgycpiB410
CSPI07G20070	Cucurbita maxima (Rimu)	cmacpiB501
CSPI07G20070	Cucurbita moschata (Rifu)	cmocpiB497
CSPI07G20070	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G20070	Cucumber (Chinese Long) v2	cpicuB338
CSPI07G20070	Cucumber (Chinese Long) v2	cpicuB346
CSPI07G20070	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G20070	Melon (DHL92) v3.5.1	cpimeB574
CSPI07G20070	Watermelon (Charleston Gray)	cpiwcgB560
CSPI07G20070	Watermelon (Charleston Gray)	cpiwcgB585
CSPI07G20070	Cucurbita pepo (Zucchini)	cpecpiB344