Cp4.1LG12g07310 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g07310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGAG1At protein
LocationCp4.1LG12 : 7045796 .. 7047511 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAATGTAGAAAGAGTCAATTTAGTCCAAAGACGGGACAACAAAAACACCGTAACCAAACGCCCCCAAAGGGTTCACCGAGCATTGAGTAAAACTGGAAGAACACACCATTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGCATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGTTTTTGTTCTTTCCTTTACCAAATTTTGTTTCTGTTACTCTTATCTCTGATGATCGTTTGTTTCTGCTGAGAGGAATTGATGTGGAAAAGCAGATTTGGTTTTTTTTTTTTTTGCCCGGGATTTGAAGAAGGGATACGTTTAAATATTGACGTGTGCTGTGCACTAAGAAGATTTCGATTCTTGGATGGAGTTCTGTTTAAAAATTACTTCTTAGTTTTGCTTGAAAACCGAACAGGGAATTCAGCAATCTTTGGATTGCAATTGTGGGCGTCCGGGTGTTCACTTTTTCGTTGTGTAATTTAGGGTTTCAGAATCTGGGCAGCTTCGATACGATATGTTTAGAAATTGTACGTTTTGCTGTTGGGGTGATTCTGTAGAGGATTTGACAATACTGATTTTTTGAACTTCAGAAATGTTCCAAGAGAAATCAAAAGTGATGCCTTGGGGCTGTATGGGAAGTGCTCTAGAGTAACATATTGATGAAAATGTCTTTATAAAGTTTTGTTTGTCGGCTTACTTTTAGATTGTTTTCATGGTCGATTTGGTTGTAGCTAAACTGAAGCTATTCTTCCTTATAAGATCATAGGCGAGTAAGTAGTGTCGATTAAACTGCTGGTGTATATATTCGATCTAAGAGGCCAGAGATTCGAATCTTCCATCCCACGAGTTGTTGAACTTACAAAAAAATCTTATGAGACTTTTGCCCCACTCTAATTTCCCCCAGAAGTCAAATAGGATCGAAAGTTGGACTATTCCCTTACCGAAAGGCAAGCAAGCCTAAGCTGCTTTACTTTGTGAAATCAGGTCAGGGAATAGAGTCAAAGGTTTAGGAGCAAACAAACCTATGCTAATTGCTAACATGACGATGGCTCTCGGGAAAGGGTAGAGTATGCCTACAATCAATCTTTACACACATGATAGTAAAGCTAGGTTATCGATGATTCTACGATAGGCAGCCGCTACGTAAATAGATAAAAGCCCCCAAACACACTGCTACATAAATCTATTTGAGGCTTTATTTAAAATCGACATGACTCATCATCACCACTTAATTGTTTGCAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTGTTTTTTTTTTTTTGGGTTTCTTCTGATAGAGAGGATGTTCTTTGGGGCACTTGGTTGGCTTAAAGTTTTTGTAGTATCTCCTATATCTTGCATTTTTTTCCTCCATCTGCTGACACTAAATGAAGATAAGTTAAAACTCAACAAGGAACACTTGTGGTTTTGAAATAAAGAACGAACTTTTGTTCCCTTTTGTACTATTTAGCCCCCTTTACTTGTCTCTTTATATTCTACTTTTAGTGTTGAAATGGTTCTTA

mRNA sequence

GGAATGTAGAAAGAGTCAATTTAGTCCAAAGACGGGACAACAAAAACACCGTAACCAAACGCCCCCAAAGGGTTCACCGAGCATTGAGTAAAACTGGAAGAACACACCATTTTGAGAGACAATCGGCGGACAAAATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGCATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTTTTTTTGTTTTTTTTTTTTTGGGTTTCTTCTGATAGAGAGGATGTTCTTTGGGGCACTTGGTTGGCTTAAAGTTTTTGTAGTATCTCCTATATCTTGCATTTTTTTCCTCCATCTGCTGACACTAAATGAAGATAAGTTAAAACTCAACAAGGAACACTTGTGGTTTTGAAATAAAGAACGAACTTTTGTTCCCTTTTGTACTATTTAGCCCCCTTTACTTGTCTCTTTATATTCTACTTTTAGTGTTGAAATGGTTCTTA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAGAGCGGCGGTTCGATCGGCGGAGGAGGTGGTTTCAGATCGCGCATGGAGCACTATTTATACAGCGGTGAGAAGAAGCACGTCGCCGCTGGCATCGTCGTCATTGGCATCATCTTCGGCATCCCTTGGGCCCTTATGAATCGAGGGTCAAAGCATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQDYMERADKARSQRLSSGSSSAK
BLAST of Cp4.1LG12g07310 vs. TrEMBL
Match: W9QVG6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.8e-29
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 1

Query: 2   SGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQ 61
           SG    GG  GGGGGFR+R++HYLYSGEKKHVAAGI +I I+FGIPW LMNRGSKHQSHQ
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGSKHQSHQ 144

Query: 62  DYMERADKARSQRLSSGSSSAK 84
           DY+E+ADKARSQRLSSGSSSAK
Sbjct: 145 DYLEKADKARSQRLSSGSSSAK 166

BLAST of Cp4.1LG12g07310 vs. TrEMBL
Match: V4SPP9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026865mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-26
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 1

Query: 1  MSGEAKSGGSIGG-GGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G+ GG GGGFR++MEH+LYSG+KKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

BLAST of Cp4.1LG12g07310 vs. TrEMBL
Match: A0A067EN80_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034759mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-26
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 1

Query: 1  MSGEAKSGGSIGG-GGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G+ GG GGGFR++MEH+LYSG+KKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS  SSAK
Sbjct: 61 HQDYLERADKARSERLSSSPSSAK 84

BLAST of Cp4.1LG12g07310 vs. TrEMBL
Match: A0A068TSD1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022264001 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-25
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 1

Query: 2  SGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQ 61
          SG  K GG   G GGFR++++HYLYSGEKKHV AGI +IG++FG+PW LMN+GSKHQSHQ
Sbjct: 9  SGSKKIGG---GNGGFRAKLDHYLYSGEKKHVIAGIAIIGVLFGVPWYLMNKGSKHQSHQ 68

Query: 62 DYMERADKARSQRLSSGSSSA 83
          DYMERADKARS+RLS GSS+A
Sbjct: 69 DYMERADKARSERLSKGSSAA 86

BLAST of Cp4.1LG12g07310 vs. TrEMBL
Match: A0A0E0BTZ4_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-25
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 1

Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          M GEA SGG  GGGGGFR+R+EHYLYSGEKKHV AGI +   IFG+PW LM RG+KHQSH
Sbjct: 1  MGGEATSGG--GGGGGFRARVEHYLYSGEKKHVVAGIAIFAAIFGVPWYLMTRGAKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSA 83
          QDYMERA+KAR +RLSSG SS+
Sbjct: 61 QDYMERANKARLERLSSGQSSS 80

BLAST of Cp4.1LG12g07310 vs. TAIR10
Match: AT1G16000.1 (AT1G16000.1 unknown protein)

HSP 1 Score: 112.8 bits (281), Expect = 9.9e-26
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1

Query: 1  MSGEAKSGG---SIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKH 60
          M  E K+ G   S+ GGGGFR++MEHY+YSGEKKHV  GI ++ IIFG+PW LM +GSKH
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKH 60

Query: 61 QSHQDYMERADKARSQRLSSGSSSAK 84
          QSHQDYM++ADKAR  RLSS SS+ K
Sbjct: 61 QSHQDYMDKADKARKARLSSSSSANK 86

BLAST of Cp4.1LG12g07310 vs. TAIR10
Match: AT1G80890.1 (AT1G80890.1 unknown protein)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-25
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          M  E+KS     GGGG R++MEHY+YSGEKKHV AGI +I IIFGIPW LMN+GSKH+SH
Sbjct: 1  MGNESKSNL---GGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDY+E+ADKAR  RLSS SSS K
Sbjct: 61 QDYLEKADKARKARLSSSSSSDK 80

BLAST of Cp4.1LG12g07310 vs. NCBI nr
Match: gi|449436195|ref|XP_004135879.1| (PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-34
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRMEHYLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Cp4.1LG12g07310 vs. NCBI nr
Match: gi|659122517|ref|XP_008461185.1| (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 7.1e-34
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60
          MSGEAKSGG+ GG GGFRSRME+YLYSG+KKHVAAGIV+ GIIFGIPWALMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

BLAST of Cp4.1LG12g07310 vs. NCBI nr
Match: gi|703090334|ref|XP_010094051.1| (hypothetical protein L484_018067 [Morus notabilis])

HSP 1 Score: 134.8 bits (338), Expect = 6.9e-29
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 1

Query: 2   SGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSHQ 61
           SG    GG  GGGGGFR+R++HYLYSGEKKHVAAGI +I I+FGIPW LMNRGSKHQSHQ
Sbjct: 85  SGGGGGGGGSGGGGGFRARIDHYLYSGEKKHVAAGIAIITIVFGIPWVLMNRGSKHQSHQ 144

Query: 62  DYMERADKARSQRLSSGSSSAK 84
           DY+E+ADKARSQRLSSGSSSAK
Sbjct: 145 DYLEKADKARSQRLSSGSSSAK 166

BLAST of Cp4.1LG12g07310 vs. NCBI nr
Match: gi|747054243|ref|XP_011073320.1| (PREDICTED: uncharacterized protein LOC105158304 [Sesamum indicum])

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 1

Query: 1  MSGEAKSGGS---IGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKH 60
          MSG+ K  G+   + GGGGFR+ +EHYLYSGEKKHVAAGI VIG++FGIPW LMNRGSKH
Sbjct: 1  MSGDTKKAGNGSGVAGGGGFRATLEHYLYSGEKKHVAAGIAVIGVLFGIPWYLMNRGSKH 60

Query: 61 QSHQDYMERADKARSQRLSSGSS 81
          QSHQDY+ERADKARS+RLS+GSS
Sbjct: 61 QSHQDYLERADKARSERLSAGSS 83

BLAST of Cp4.1LG12g07310 vs. NCBI nr
Match: gi|567870057|ref|XP_006427650.1| (hypothetical protein CICLE_v10026865mg [Citrus clementina])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 1

Query: 1  MSGEAKSGGSIGG-GGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQS 60
          M  E+KS G+ GG GGGFR++MEH+LYSG+KKHV AGIV+I  IFG+PW LMNRGSKHQS
Sbjct: 1  MGSESKSSGTNGGAGGGFRAKMEHHLYSGDKKHVFAGIVIISAIFGVPWYLMNRGSKHQS 60

Query: 61 HQDYMERADKARSQRLSSGSSSAK 84
          HQDY+ERADKARS+RLSS SSSAK
Sbjct: 61 HQDYLERADKARSERLSSSSSSAK 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9QVG6_9ROSA4.8e-2980.49Uncharacterized protein OS=Morus notabilis GN=L484_018067 PE=4 SV=1[more]
V4SPP9_9ROSI1.0e-2676.19Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026865mg PE=4 SV=1[more]
A0A067EN80_CITSI3.8e-2675.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034759mg PE=4 SV=1[more]
A0A068TSD1_COFCA2.5e-2572.84Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022264001 PE=4 SV=1[more]
A0A0E0BTZ4_9ORYZ2.5e-2574.39Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G16000.19.9e-2665.12 unknown protein[more]
AT1G80890.12.9e-2569.88 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449436195|ref|XP_004135879.1|4.2e-3491.57PREDICTED: uncharacterized protein LOC101214375 [Cucumis sativus][more]
gi|659122517|ref|XP_008461185.1|7.1e-3491.57PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo][more]
gi|703090334|ref|XP_010094051.1|6.9e-2980.49hypothetical protein L484_018067 [Morus notabilis][more]
gi|747054243|ref|XP_011073320.1|2.9e-2775.90PREDICTED: uncharacterized protein LOC105158304 [Sesamum indicum][more]
gi|567870057|ref|XP_006427650.1|1.4e-2676.19hypothetical protein CICLE_v10026865mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07310.1Cp4.1LG12g07310.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35990FAMILY NOT NAMEDcoord: 1..83
score: 5.2
NoneNo IPR availablePANTHERPTHR35990:SF1GAG1AT PROTEINcoord: 1..83
score: 5.2

The following gene(s) are paralogous to this gene:

None