Carg18246 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18246
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Non-specific lipid-transfer protein-like protein
Location	Cucurbita_argyrosperma_scaffold_120 : 195075 .. 195467 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCTATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGTCGCCTCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGGCGATGCCCTCGAAAGTTTGCTGCAAGAATGTGGAAAGTGTGTTGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCGACTTGTGGAATTTCGACTCGGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA

mRNA sequence

ATGGCAATGGCTATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGTCGCCTCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGGCGATGCCCTCGAAAGTTTGCTGCAAGAATGTGGAAAGTGTGTTGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCGACTTGTGGAATTTCGACTCGGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA

Coding sequence (CDS)

ATGGCAATGGCTATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGTCGCCTCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGGCGATGCCCTCGAAAGTTTGCTGCAAGAATGTGGAAAGTGTGTTGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCGACTTGTGGAATTTCGACTCGGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA

Protein sequence

MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSDCGCAFDFILV

Homology

[Close]

BLAST of Carg18246 vs. NCBI nr
Match: XP_023553719.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 1.4e-61
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITI 60
           MAMAMIQSLALFLTCIAAIWICNENIIASAASPL SPRPSAVDCPAVVYAILPCVNYITI
Sbjct: 3   MAMAMIQSLALFLTCIAAIWICNENIIASAASPL-SPRPSAVDCPAVVYAILPCVNYITI 62

Query: 61  GSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSD 120
           GSTM MPS+VCCKNVESV+KWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIST LSD
Sbjct: 63  GSTMTMPSEVCCKNVESVMKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPLSD 122

Query: 121 CGCAFDFILV 131
           CGCAFDFILV
Sbjct: 123 CGCAFDFILV 131

[Close]

BLAST of Carg18246 vs. NCBI nr
Match: XP_022959525.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata])

HSP 1 Score: 240.7 bits (613), Expect = 2.7e-60
Identity = 125/130 (96.15%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 3   MAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGS 62
           MAMIQSLALFLTCIAAIWICNENIIASAASPL SPRPSAVDCPAVVYAILPCVNY+TIGS
Sbjct: 1   MAMIQSLALFLTCIAAIWICNENIIASAASPL-SPRPSAVDCPAVVYAILPCVNYVTIGS 60

Query: 63  TMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIS--TRLSD 122
           TMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIS  T LSD
Sbjct: 61  TMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTPTPLSD 120

Query: 123 CGCAFDFILV 131
           CGCAFDFILV
Sbjct: 121 CGCAFDFILV 129

[Close]

BLAST of Carg18246 vs. NCBI nr
Match: XP_011655206.1 (PREDICTED: extensin [Cucumis sativus] >KGN51003.1 hypothetical protein Csa_5G396010 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 8.5e-22
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITI 60
           M M MI +L LFLTCI A        IASA SP  SP  +A DC  VV+ +LPCV+Y+TI
Sbjct: 1   MTMGMISTLGLFLTCIVA--------IASAGSP--SPGSNAGDCSEVVFQMLPCVDYLTI 60

Query: 61  GSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSD 120
           GST A  S VCC+ +++ L+    CMC  LKQS+ +GI LN +RAI LPA CGIST L D
Sbjct: 61  GSTKANASLVCCEVLKNALEPRPDCMCDVLKQSDKMGIHLNNSRAIALPAACGISTSLPD 114

Query: 121 CGCA 125
           C  A
Sbjct: 121 CDIA 114

[Close]

BLAST of Carg18246 vs. NCBI nr
Match: XP_022993468.1 (non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 58/124 (46.77%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITI 60
           MAM++I SLALF  C                         A+DC AVVY ++PCV Y TI
Sbjct: 1   MAMSIIPSLALFTIC--------XXXXXXXXXXXXXXXXXALDCSAVVYQMMPCVEYFTI 60

Query: 61  GSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSD 120
           GST A  S  CCK V+ V+K    CMC  LKQ+  +GIQLN TRA+ LPA CG  T L+D
Sbjct: 61  GSTKANASTDCCKVVKDVMKSKGDCMCDALKQNGRMGIQLNRTRALGLPAACGSPTSLAD 116

Query: 121 CGCA 125
           C  A
Sbjct: 121 CTIA 116

[Close]

BLAST of Carg18246 vs. NCBI nr
Match: XP_006397274.1 (non-specific lipid-transfer protein-like protein At2g13820 isoform X1 [Eutrema salsugineum] >ESQ38727.1 hypothetical protein EUTSA_v10028961mg [Eutrema salsugineum])

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-17
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 36  SPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSES 95
           +P PS  DC  V+Y ++ C++Y+T GS   MP K CC  +ESVLK+N KC+CVGL+ S+S
Sbjct: 42  APGPSNSDCSTVIYDMMDCLSYLTPGSNDTMPGKACCDGIESVLKYNPKCICVGLQSSQS 101

Query: 96  LGIQLNVTRAIDLPATCGISTRLSDCG 123
           +G+ LN TRA+ +P TC I      CG
Sbjct: 102 MGMALNNTRALAVPKTCKIPIAAPHCG 128

[Close]

BLAST of Carg18246 vs. TAIR10
Match: AT4G08670.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 1   MAMAMIQSLALFL----TCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVN 60
           M  +++ S  L L    + +  I   N++  A +     +P PS+ DC  V+Y+++ C+ 
Sbjct: 1   MKQSLLLSFVLLLLSSSSLVTPIHARNKSNPAKSPVGAPAPGPSSSDCSTVIYSMMDCLG 60

Query: 61  YITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIST 120
           Y+ +GS    P K CC  +E+VL++N +C+C GL  +  +GI+LN TRA+  P  C +S 
Sbjct: 61  YLGVGSNETKPEKSCCTGIETVLQYNPQCICAGLVSAGEMGIELNSTRALATPKACKLSI 120

Query: 121 RLSDCG 123
               CG
Sbjct: 121 APPHCG 126

[Close]

BLAST of Carg18246 vs. TAIR10
Match: AT1G36150.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.7e-14
Identity = 30/80 (37.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 36  SPRPS-AVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSE 95
           +P+PS + DC +V+Y+++ C++++T+GST   P+K CC  V++VL ++ KC+C  L+ S 
Sbjct: 36  TPQPSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSR 95

Query: 96  SLGIQLNVTRAIDLPATCGI 115
            +G  L+ T+A+ +P  C +
Sbjct: 96  EMGFVLDDTKALAMPKICNV 115

[Close]

BLAST of Carg18246 vs. TAIR10
Match: AT5G64080.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 35/111 (31.53%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 13  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCC 72
           L  I  + + + +++ ++    ++P PS VDC  ++  +  C+++++ G T+A P   CC
Sbjct: 13  LFLIVLLSLSSVSVLGASHHHATAPAPS-VDCSTLILNMADCLSFVSSGGTVAKPEGTCC 72

Query: 73  KNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGI-STRLSDCG 123
             +++VLK +++C+C   K S SLG+ LN+T+A  LPA C + +  ++ CG
Sbjct: 73  SGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCG 122

[Close]

BLAST of Carg18246 vs. TAIR10
Match: AT2G13820.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 26  IIASAASPLSSPRP-SAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAK 85
           +I S  + +S  R  +AVDC +++  +  C++++T GST+  P   CC  +++V++   +
Sbjct: 8   MIFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPE 67

Query: 86  CMCVGLKQSESLGIQLNVTRAIDLPATCGIS 116
           C+C   K S SLG+ L++++A  LP+ C ++
Sbjct: 68  CLCEAFKNSGSLGLTLDLSKAASLPSVCKVA 98

[Close]

BLAST of Carg18246 vs. TAIR10
Match: AT3G43720.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-07
Identity = 29/89 (32.58%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 32  SPLSSPRPSAVDCPAVVYAILPCVNYITI--GSTMAMPSKVCCKNVESVLKWNAKCMCVG 91
           SP S P   A DC A +  +  C++Y+T+  G   A P K CC  +  +++ + +C+C  
Sbjct: 27  SPSSGP-SGAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYL 86

Query: 92  LK--QSESLGIQLNVTRAIDLPATCGIST 117
           L    +  LGI+++  +A+ LP  CG+ T
Sbjct: 87  LSGDMAAQLGIKIDKAKALKLPGVCGVIT 114

[Close]

BLAST of Carg18246 vs. Swiss-Prot
Match: sp|Q8VYI9|NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana OX=3702 GN=At5g64080 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 35/111 (31.53%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 13  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCC 72
           L  I  + + + +++ ++    ++P PS VDC  ++  +  C+++++ G T+A P   CC
Sbjct: 13  LFLIVLLSLSSVSVLGASHHHATAPAPS-VDCSTLILNMADCLSFVSSGGTVAKPEGTCC 72

Query: 73  KNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGI-STRLSDCG 123
             +++VLK +++C+C   K S SLG+ LN+T+A  LPA C + +  ++ CG
Sbjct: 73  SGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCG 122

[Close]

BLAST of Carg18246 vs. Swiss-Prot
Match: sp|Q9ZQI8|NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana OX=3702 GN=At2g13820 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.7e-10
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 26  IIASAASPLSSPRP-SAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAK 85
           +I S  + +S  R  +AVDC +++  +  C++++T GST+  P   CC  +++V++   +
Sbjct: 8   MIFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPE 67

Query: 86  CMCVGLKQSESLGIQLNVTRAIDLPATCGIS 116
           C+C   K S SLG+ L++++A  LP+ C ++
Sbjct: 68  CLCEAFKNSGSLGLTLDLSKAASLPSVCKVA 98

[Close]

BLAST of Carg18246 vs. Swiss-Prot
Match: sp|Q9LZH5|LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=3702 GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.6e-06
Identity = 29/89 (32.58%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 32  SPLSSPRPSAVDCPAVVYAILPCVNYITI--GSTMAMPSKVCCKNVESVLKWNAKCMCVG 91
           SP S P   A DC A +  +  C++Y+T+  G   A P K CC  +  +++ + +C+C  
Sbjct: 27  SPSSGP-SGAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYL 86

Query: 92  LK--QSESLGIQLNVTRAIDLPATCGIST 117
           L    +  LGI+++  +A+ LP  CG+ T
Sbjct: 87  LSGDMAAQLGIKIDKAKALKLPGVCGVIT 114

[Close]

BLAST of Carg18246 vs. Swiss-Prot
Match: sp|O64864|YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.3e-04
Identity = 21/81 (25.93%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 43  DCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQ--SESLGIQL 102
           +C A +  +  C+ Y+        P+  CC  ++ V+  + KC+C+ +++     LG+Q+
Sbjct: 35  ECTAQLVGMATCLPYVQ--GKAKSPTPDCCSGLKQVINSDMKCLCMIIQERNDPDLGLQV 94

Query: 103 NVTRAIDLPATCGISTRLSDC 122
           NV+ A+ LP+ C  +  ++ C
Sbjct: 95  NVSLALALPSVCHATADITKC 113

[Close]

BLAST of Carg18246 vs. TrEMBL
Match: tr|A0A0A0KN80|A0A0A0KN80_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G396010 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22
Identity = 67/124 (54.03%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITI 60
           M M MI +L LFLTCI A        IASA SP  SP  +A DC  VV+ +LPCV+Y+TI
Sbjct: 1   MTMGMISTLGLFLTCIVA--------IASAGSP--SPGSNAGDCSEVVFQMLPCVDYLTI 60

Query: 61  GSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSD 120
           GST A  S VCC+ +++ L+    CMC  LKQS+ +GI LN +RAI LPA CGIST L D
Sbjct: 61  GSTKANASLVCCEVLKNALEPRPDCMCDVLKQSDKMGIHLNNSRAIALPAACGISTSLPD 114

Query: 121 CGCA 125
           C  A
Sbjct: 121 CDIA 114

[Close]

BLAST of Carg18246 vs. TrEMBL
Match: tr|V4L8N2|V4L8N2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028961mg PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 36  SPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSES 95
           +P PS  DC  V+Y ++ C++Y+T GS   MP K CC  +ESVLK+N KC+CVGL+ S+S
Sbjct: 42  APGPSNSDCSTVIYDMMDCLSYLTPGSNDTMPGKACCDGIESVLKYNPKCICVGLQSSQS 101

Query: 96  LGIQLNVTRAIDLPATCGISTRLSDCG 123
           +G+ LN TRA+ +P TC I      CG
Sbjct: 102 MGMALNNTRALAVPKTCKIPIAAPHCG 128

[Close]

BLAST of Carg18246 vs. TrEMBL
Match: tr|A0A1S3CC53|A0A1S3CC53_CUCME (SH3 domain-containing protein C23A1.17-like OS=Cucumis melo OX=3656 GN=LOC103499284 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.9e-16
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 1   MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITI 60
           M M MI +L+LFLTC                            C  +V+ ILPCV+Y+TI
Sbjct: 1   MTMGMISNLSLFLTC--------XXXXXXXXXXXXXXXXXXXXCSVLVFHILPCVDYLTI 60

Query: 61  GSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSD 120
           GST A  S+VCC+ +++ ++ +A+CMC  LKQS+ +GI LN+TR + LPA CGI   L +
Sbjct: 61  GSTKANASQVCCEVLKNTMEPSAECMCDQLKQSDKMGIHLNITRVVGLPAACGIPISLPE 116

Query: 121 CGCA 125
           C  A
Sbjct: 121 CDIA 116

[Close]

BLAST of Carg18246 vs. TrEMBL
Match: tr|A0A164VSI5|A0A164VSI5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021847 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 29  SAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCV 88
           S AS  ++P P AVDC  VV  ++ C++++T GST++ P   CC  ++SVLK NA+C+C 
Sbjct: 20  SRASHHAAPTP-AVDCSTVVLNMVDCLSFVTSGSTVSKPEGSCCSGLKSVLKSNAECLCE 79

Query: 89  GLKQSESLGIQLNVTRAIDLPATCGISTRLSDCG 123
             K S   G+ LNVT+A+ LPA C IST +++CG
Sbjct: 80  AFKNSAQFGVSLNVTKAMTLPAVCKISTPVNNCG 112

[Close]

BLAST of Carg18246 vs. TrEMBL
Match: tr|A0A0D3B8F1|A0A0D3B8F1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 9   LALFLTCIAAIWICNENIIASAASPLSSPR--PSAVDCPAVVYAILPCVNYITIGSTMAM 68
           L L     A I   N++  A + SP+++P   PS  DC +V+Y ++ C++YIT GS    
Sbjct: 10  LVLLSPSFAPIHARNKSHSAMSPSPVATPAPGPSNSDCSSVIYDMMDCLSYITPGSNDTS 69

Query: 69  PSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGISTRLSDCG 123
           P+KVCC  + SVL++N KC+CVGL  ++ +GI++N TRA  +P TC +      CG
Sbjct: 70  PTKVCCGGILSVLQYNPKCVCVGLASTKDMGIEINSTRAHSMPTTCKLPIAAPHCG 125

The following BLAST results are available for this feature:

BLAST of Carg18246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553719.1	1.4e-61	96.15	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp...	[more]
XP_022959525.1	2.7e-60	96.15	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata]	[more]
XP_011655206.1	8.5e-22	54.03	PREDICTED: extensin [Cucumis sativus] >KGN51003.1 hypothetical protein Csa_5G396...	[more]
XP_022993468.1	3.7e-17	46.77	non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita maxima]	[more]
XP_006397274.1	4.8e-17	49.43	non-specific lipid-transfer protein-like protein At2g13820 isoform X1 [Eutrema s...	[more]

BLAST of Carg18246 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G08670.1	5.0e-16	33.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G36150.1	4.7e-14	37.50	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G64080.1	1.4e-13	31.53	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G13820.1	3.7e-11	31.87	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G43720.1	4.2e-07	32.58	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of Carg18246 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYI9\|NLTL5_ARATH	2.4e-12	31.53	Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia...	[more]
sp\|Q9ZQI8\|NLTL2_ARATH	6.7e-10	31.87	Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia...	[more]
sp\|Q9LZH5\|LTPG2_ARATH	7.6e-06	32.58	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=37...	[more]
sp\|O64864\|YLS3_ARATH	9.3e-04	25.93	Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1	[more]

BLAST of Carg18246 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KN80\|A0A0A0KN80_CUCSA	5.6e-22	54.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G396010 PE=4 SV=1	[more]
tr\|V4L8N2\|V4L8N2_EUTSA	3.2e-17	49.43	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10028961mg PE=...	[more]
tr\|A0A1S3CC53\|A0A1S3CC53_CUCME	7.9e-16	41.13	SH3 domain-containing protein C23A1.17-like OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
tr\|A0A164VSI5\|A0A164VSI5_DAUCA	2.3e-15	46.81	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021847 ...	[more]
tr\|A0A0D3B8F1\|A0A0D3B8F1_BRAOL	3.0e-15	40.52	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store
IPR000528	Plant_LTP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18246-RA	Carg18246-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 66..80 score: 28.21 coord: 99..116 score: 34.96 coord: 43..59 score: 33.76
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 41..121 e-value: 1.8E-12 score: 48.9
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 9..122
None	No IPR available	PANTHER	PTHR33044:SF27	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 9..122
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 51..114 e-value: 3.44079E-9 score: 48.1919
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 28..121 e-value: 1.0E-12 score: 47.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 41..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18246	Cla002146	Watermelon (97103) v1	carwmB0522
Carg18246	Csa5G396010	Cucumber (Chinese Long) v2	carcuB0556
Carg18246	MELO3C022792	Melon (DHL92) v3.5.1	carmeB0531
Carg18246	ClCG03G009020	Watermelon (Charleston Gray)	carwcgB0512
Carg18246	CSPI05G14500	Wild cucumber (PI 183967)	carcpiB0562
Carg18246	CmaCh15G007210	Cucurbita maxima (Rimu)	carcmaB0737
Carg18246	CmoCh15G007410	Cucurbita moschata (Rifu)	carcmoB0714
Carg18246	CmoCh04G024220	Cucurbita moschata (Rifu)	carcmoB0716
Carg18246	Lsi09G009670	Bottle gourd (USVL1VR-Ls)	carlsiB480
Carg18246	Cp4.1LG13g05000	Cucurbita pepo (Zucchini)	carcpeB0746
Carg18246	Cp4.1LG01g20180	Cucurbita pepo (Zucchini)	carcpeB0747
Carg18246	CsGy5G014460	Cucumber (Gy14) v2	carcgybB0533
Carg18246	MELO3C022792.2	Melon (DHL92) v3.6.1	carmedB0536
Carg18246	CsaV3_5G023600	Cucumber (Chinese Long) v3	carcucB0564
Carg18246	Cla97C03G060200	Watermelon (97103) v2	carwmbB0554
Carg18246	Bhi12G001109	Wax gourd	carwgoB0637

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18246	Carg01487	Silver-seed gourd	carcarB500

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18246	Cucumber (Gy14) v1	carcgyB0604
Carg18246	Cucurbita maxima (Rimu)	carcmaB0738
Carg18246	Watermelon (97103) v1	carwmB0523
Carg18246	Watermelon (97103) v2	carwmbB0553
Carg18246	Wax gourd	carwgoB0639