Carg16415 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16415
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	S-adenosylmethionine decarboxylase proenzyme
Location	Cucurbita_argyrosperma_scaffold_130 : 310878 .. 311200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGCGTTAATGTTGTGATGGAGGCGAAACGCGGTACGAAGAAGTCTCGCAGTGGTAGTAGCAATAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCACACGGTGGTATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGATTGTTCTTCGATTTCTTCGATTTCTTCGAGTTCTTGAGTAGTTTTGTGATTTCTTGCGTTGTAATTGTGTTTTTCTTGTTGATTTTCTGGCAGTGCGTGAGGAAACCATCCTGATACCTTTTGTCTCTGTAGATTACGAGTTCTGA

mRNA sequence

AGAAGAAGCGTTAATGTTGTGATGGAGGCGAAACGCGGTACGAAGAAGTCTCGCAGTGGTAGTAGCAATAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCACACGGTGGTATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGATTGTTCTTCGATTTCTTCGATTTCTTCGAGTTCTTGATGCGTGAGGAAACCATCCTGATACCTTTTGTCTCTGTAGATTACGAGTTCTGA

Coding sequence (CDS)

AGAAGAAGCGTTAATGTTGTGATGGAGGCGAAACGCGGTACGAAGAAGTCTCGCAGTGGTAGTAGCAATAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCACACGGTGGTATTGAGAAGTTCCGATCTGCTGCGTATTCCAACGTAAGATTGTTCTTCGATTTCTTCGATTTCTTCGAGTTCTTGATGCGTGAGGAAACCATCCTGATACCTTTTGTCTCTGTAGATTACGAGTTCTGA

Protein sequence

RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRLFFDFFDFFEFLMREETILIPFVSVDYEF

Homology

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: XP_023536821.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          MEAKRGTKKS SGS  SSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 1  MEAKRGTKKSSSGSXXSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 50

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: OAE18299.1 (hypothetical protein AXG93_436s1300 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 75.9 bits (185), Expect = 7.8e-11
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 2  RSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRL 61
          + +NV+MEAK G +K+ S SS      QYE+PLGY++EDVRPHGG+EKFR+AAYSNV +
Sbjct: 33 KGLNVIMEAKGGDEKNSSTSS-----WQYESPLGYVVEDVRPHGGVEKFRTAAYSNVNM 86

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: ONK69697.1 (uncharacterized protein A4U43_C05F25790 [Asparagus officinalis])

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 4  VNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          VNV+ME+K G K      S+SS   QYEAPLGY IEDVRPHGGIEKFRSAAYSN
Sbjct: 13 VNVLMESKGGKK------SSSSSSLQYEAPLGYSIEDVRPHGGIEKFRSAAYSN 60

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: RDY02299.1 (S-adenosylmethionine decarboxylase proenzyme, partial [Mucuna pruriens])

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 3  SVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRLFF 62
          S+N +ME+K G KKS      SSK   YEAPLGYI EDVRPHGGI+KFRSAAYSN  L F
Sbjct: 21 SLNDLMESKGGKKKS------SSKSLLYEAPLGYITEDVRPHGGIKKFRSAAYSNYSLLF 74

[Close]

BLAST of Carg16415 vs. NCBI nr
Match: ESR66778.1 (hypothetical protein CICLE_v10010716mg, partial [Citrus clementina])

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNV 59
          ++SVNVVME K G KK    SS+     QYE PLGY IEDVRP+GGIEKFRSAAY+N+
Sbjct: 12 KKSVNVVMETKGGKKK----SSSCKNSIQYEVPLGYSIEDVRPNGGIEKFRSAAYANI 65

[Close]

BLAST of Carg16415 vs. TAIR10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-10
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQ--YEAPLGYIIEDVRPHGGIEKFRSAAYSNV 59
          ME K G KK    SSNSS R    +EAPL Y IEDVRP+GGI+KFRSAAYSN+
Sbjct: 1  METKGGKKK----SSNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNI 49

[Close]

BLAST of Carg16415 vs. TAIR10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 8  MEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          ME+K G KKS S SS       YEAPLGY IEDVRP GGI+KF+S+ YSN
Sbjct: 1  MESKAGNKKSSSNSSLC-----YEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

[Close]

BLAST of Carg16415 vs. TAIR10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9)

HSP 1 Score: 53.5 bits (127), Expect = 7.5e-08
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          YEAPLGY IEDVRP+GGI+KF+S+ YSN
Sbjct: 19 YEAPLGYSIEDVRPNGGIKKFKSSVYSN 46

[Close]

BLAST of Carg16415 vs. TrEMBL
Match: tr|A0A176VBL3|A0A176VBL3_MARPO (Uncharacterized protein OS=Marchantia polymorpha subsp. ruderalis OX=1480154 GN=AXG93_436s1300 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 2  RSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRL 61
          + +NV+MEAK G +K+ S SS      QYE+PLGY++EDVRPHGG+EKFR+AAYSNV +
Sbjct: 33 KGLNVIMEAKGGDEKNSSTSS-----WQYESPLGYVVEDVRPHGGVEKFRTAAYSNVNM 86

[Close]

BLAST of Carg16415 vs. TrEMBL
Match: tr|V4U1S8|V4U1S8_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10010716mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNV 59
          ++SVNVVME K G KK    SS+     QYE PLGY IEDVRP+GGIEKFRSAAY+N+
Sbjct: 12 KKSVNVVMETKGGKKK----SSSCKNSIQYEVPLGYSIEDVRPNGGIEKFRSAAYANI 65

[Close]

BLAST of Carg16415 vs. TrEMBL
Match: tr|M5X8C0|M5X8C0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppb015242mg PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-10
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 2  RSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNVRLF 61
          + +N +ME+K G KK     S+SSK   YEAPLGY IEDVRPHGGI+KFRSAAYSN  LF
Sbjct: 1  KKLNELMESKGGKKK-----SSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNEVLF 55

[Close]

BLAST of Carg16415 vs. TrEMBL
Match: tr|A0A059ADW4|A0A059ADW4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01448 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.7e-10
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 2   RSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNV 59
           R +N +ME+K G KK     S+SSK   YEAPLGY IED+RPHGGI+KFRSAAYSNV
Sbjct: 75  RKLNELMESKGGKKK-----SSSSKSLFYEAPLGYSIEDLRPHGGIKKFRSAAYSNV 126

[Close]

BLAST of Carg16415 vs. TrEMBL
Match: tr|A0A1R3J120|A0A1R3J120_COCAP (S-adenosylmethionine decarboxylase OS=Corchorus capsularis OX=210143 GN=CCACVL1_08337 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  RRSVNVVMEAKRGTKKSRSGSSNSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNV 59
          R+ +N +ME+K G KK     S+SSK   YEAPLGY IEDVRPHGGI+KFRSAAYSN+
Sbjct: 3  RKRLNDLMESKGGKKK-----SSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNM 55

The following BLAST results are available for this feature:

BLAST of Carg16415 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536821.1	2.1e-16	94.00	S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo]	[more]
OAE18299.1	7.8e-11	61.02	hypothetical protein AXG93_436s1300 [Marchantia polymorpha subsp. ruderalis]	[more]
ONK69697.1	3.0e-10	72.22	uncharacterized protein A4U43_C05F25790 [Asparagus officinalis]	[more]
RDY02299.1	3.9e-10	66.67	S-adenosylmethionine decarboxylase proenzyme, partial [Mucuna pruriens]	[more]
ESR66778.1	6.6e-10	65.52	hypothetical protein CICLE_v10010716mg, partial [Citrus clementina]	[more]

BLAST of Carg16415 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25572.1	2.8e-10	66.04	conserved peptide upstream open reading frame 11	[more]
AT5G15948.1	8.0e-10	64.00	conserved peptide upstream open reading frame 10	[more]
AT3G02468.1	7.5e-08	78.57	conserved peptide upstream open reading frame 9	[more]

BLAST of Carg16415 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16415 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A176VBL3\|A0A176VBL3_MARPO	5.2e-11	61.02	Uncharacterized protein OS=Marchantia polymorpha subsp. ruderalis OX=1480154 GN=...	[more]
tr\|V4U1S8\|V4U1S8_9ROSI	4.4e-10	65.52	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10010...	[more]
tr\|M5X8C0\|M5X8C0_PRUPE	7.5e-10	65.00	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppb015242m...	[more]
tr\|A0A059ADW4\|A0A059ADW4_EUCGR	9.7e-10	66.67	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01...	[more]
tr\|A0A1R3J120\|A0A1R3J120_COCAP	1.3e-09	65.52	S-adenosylmethionine decarboxylase OS=Corchorus capsularis OX=210143 GN=CCACVL1_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012511	AdoMetDC_leader

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16415-RA	Carg16415-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 8..58 e-value: 4.8E-23 score: 80.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR35727:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 11	coord: 4..59
None	No IPR available	PANTHER	PTHR35727	FAMILY NOT NAMED	coord: 4..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16415	Csa2G036690	Cucumber (Chinese Long) v2	carcuB0929
Carg16415	CSPI02G05400	Wild cucumber (PI 183967)	carcpiB0952
Carg16415	CmaCh12G008360	Cucurbita maxima (Rimu)	carcmaB1254
Carg16415	CmoCh12G008410	Cucurbita moschata (Rifu)	carcmoB1223
Carg16415	Lsi11G007050	Bottle gourd (USVL1VR-Ls)	carlsiB829
Carg16415	Cp4.1LG07g06910	Cucurbita pepo (Zucchini)	carcpeB1263
Carg16415	CsaV3_2G007760	Cucumber (Chinese Long) v3	carcucB0952
Carg16415	Cla97C11G218580	Watermelon (97103) v2	carwmbB0954
Carg16415	Bhi06G001199	Wax gourd	carwgoB1054

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16415	Carg11956	Silver-seed gourd	carcarB523

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16415	Watermelon (97103) v2	carwmbB0959
Carg16415	Silver-seed gourd	carcarB493
Carg16415	Cucumber (Gy14) v2	carcgybB0901
Carg16415	Cucumber (Gy14) v2	carcgybB0902
Carg16415	Cucumber (Gy14) v1	carcgyB1029
Carg16415	Cucurbita maxima (Rimu)	carcmaB1253
Carg16415	Cucurbita maxima (Rimu)	carcmaB1255
Carg16415	Cucurbita moschata (Rifu)	carcmoB1224
Carg16415	Cucurbita pepo (Zucchini)	carcpeB1260
Carg16415	Wild cucumber (PI 183967)	carcpiB0951
Carg16415	Cucumber (Chinese Long) v3	carcucB0951
Carg16415	Melon (DHL92) v3.5.1	carmeB0898
Carg16415	Melon (DHL92) v3.5.1	carmeB0900
Carg16415	Melon (DHL92) v3.6.1	carmedB0907
Carg16415	Melon (DHL92) v3.6.1	carmedB0908
Carg16415	Watermelon (Charleston Gray)	carwcgB0888
Carg16415	Watermelon (Charleston Gray)	carwcgB0892
Carg16415	Watermelon (97103) v1	carwmB0914
Carg16415	Watermelon (97103) v1	carwmB0915