Bhi06G001199 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G001199
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	S-adenosylmethionine decarboxylase proenzyme-like
Location	chr6 : 40908529 .. 40908784 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGCGTGGATGTTGTAATGAAGACGGAAGGCGGTAAGAAGAAATCTAGCAGTAGTAGTAGCAAGAGTAGTAAAAGGCAACAATACGAAGCTCCGCTTGGATACATTATTGAAGACGTTCGTCCTCACGGTGGCATTGAGAAGTTCCGATCTGCTGCTTATTCCAACGTAAGATTGTTCTTCGAGTTCTTCTTGAGTAAAAGTTTGTGAATTCTTGTGTTGTAATTTGATTTTGTTTTTCTTTTGGCAGTGC

mRNA sequence

AGAAGAAGCGTGGATGTTGTAATGAAGACGGAAGGCGGTAAGAAGAAATCTAGCAGTAGTAGTAGCAAGAGTAGTAAAAGGCAACAATACGAAGCTCCGCTTGGATACATTATTGAAGACGTTCGTCCTCACGGTGGCATTGAGAAGTTCCGATCTGCTGCTTATTCCAACTGC

Coding sequence (CDS)

AGAAGAAGCGTGGATGTTGTAATGAAGACGGAAGGCGGTAAGAAGAAATCTAGCAGTAGTAGTAGCAAGAGTAGTAAAAGGCAACAATACGAAGCTCCGCTTGGATACATTATTGAAGACGTTCGTCCTCACGGTGGCATTGAGAAGTTCCGATCTGCTGCTTATTCCAACTGC

Protein sequence

RRSVDVVMKTEGGKKKSSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSNC

Homology

[Close]

BLAST of Bhi06G001199 vs. TAIR10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9)

HSP 1 Score: 56.6 bits (135), Expect = 5.9e-09
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGY IEDVRP+GGI+KF+S+ YSNC
Sbjct: 19 YEAPLGYSIEDVRPNGGIKKFKSSVYSNC 47

[Close]

BLAST of Bhi06G001199 vs. TAIR10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-08
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGY IEDVRP GGI+KF+S+ YSNC
Sbjct: 18 YEAPLGYSIEDVRPFGGIKKFKSSVYSNC 46

[Close]

BLAST of Bhi06G001199 vs. TAIR10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-07
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 58
          +EAPL Y IEDVRP+GGI+KFRSAAYSN
Sbjct: 21 FEAPLRYSIEDVRPNGGIKKFRSAAYSN 48

[Close]

BLAST of Bhi06G001199 vs. TrEMBL
Match: tr|A0A1S3BUN9|A0A1S3BUN9_CUCME (S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo OX=3656 GN=LOC103493485 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSNC
Sbjct: 23 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 51

[Close]

BLAST of Bhi06G001199 vs. TrEMBL
Match: tr|A0A0A0LM83|A0A0A0LM83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSNC
Sbjct: 24 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 52

[Close]

BLAST of Bhi06G001199 vs. TrEMBL
Match: tr|A5BJ64|A5BJ64_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017166 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-08
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 2   RSVDVVMKTXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
           +SVDVVM+T       XXXXXXXXXX  YE PLGYIIEDVRP+GGIEKFRSAAYSNC
Sbjct: 492 QSVDVVMET-----KGXXXXXXXXXXLQYEVPLGYIIEDVRPNGGIEKFRSAAYSNC 543

[Close]

BLAST of Bhi06G001199 vs. TrEMBL
Match: tr|V7B0K7|V7B0K7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G022200g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YE PLGYIIEDVRPHGGI+KFRSAAYSNC
Sbjct: 17 YETPLGYIIEDVRPHGGIKKFRSAAYSNC 45

[Close]

BLAST of Bhi06G001199 vs. TrEMBL
Match: tr|W1PHL1|W1PHL1_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00019p00109600 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGY IEDVRPHGGIEKFR+AAYSNC
Sbjct: 18 YEAPLGYSIEDVRPHGGIEKFRTAAYSNC 46

[Close]

BLAST of Bhi06G001199 vs. NCBI nr
Match: XP_008452459.1 (PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSNC
Sbjct: 23 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 51

[Close]

BLAST of Bhi06G001199 vs. NCBI nr
Match: KGN61071.1 (hypothetical protein Csa_2G036690 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSNC
Sbjct: 24 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 52

[Close]

BLAST of Bhi06G001199 vs. NCBI nr
Match: XP_023536821.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 30 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSNC
Sbjct: 23 YEAPLGYIIEDVRPHGGIEKFRSAAYSNC 51

[Close]

BLAST of Bhi06G001199 vs. NCBI nr
Match: CBI36591.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-08
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   RRSVDVVMKTXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
           ++SVDVVM+T      XXXXXXXXXXX  YE PLGYIIEDVRP+GGIEKFRSAAYSNC
Sbjct: 78  KQSVDVVMET-----KXXXXXXXXXXXLQYEVPLGYIIEDVRPNGGIEKFRSAAYSNC 130

[Close]

BLAST of Bhi06G001199 vs. NCBI nr
Match: CAN76947.1 (hypothetical protein VITISV_017166 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 2   RSVDVVMKTXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSNC 59
           +SVDVVM+T       XXXXXXXXXX  YE PLGYIIEDVRP+GGIEKFRSAAYSNC
Sbjct: 492 QSVDVVMET-----KGXXXXXXXXXXLQYEVPLGYIIEDVRPNGGIEKFRSAAYSNC 543

The following BLAST results are available for this feature:

BLAST of Bhi06G001199 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06G001199 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02468.1	5.9e-09	79.31	conserved peptide upstream open reading frame 9	[more]
AT5G15948.1	1.0e-08	79.31	conserved peptide upstream open reading frame 10	[more]
AT3G25572.1	1.1e-07	82.14	conserved peptide upstream open reading frame 11	[more]

BLAST of Bhi06G001199 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUN9\|A0A1S3BUN9_CUCME	1.6e-08	100.00	S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0LM83\|A0A0A0LM83_CUCSA	1.6e-08	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1	[more]
tr\|A5BJ64\|A5BJ64_VITVI	7.8e-08	77.19	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017166 PE=4 SV=1	[more]
tr\|V7B0K7\|V7B0K7_PHAVU	1.3e-07	93.10	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G022200g PE=4 ...	[more]
tr\|W1PHL1\|W1PHL1_AMBTC	1.7e-07	93.10	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00019p00109600...	[more]

BLAST of Bhi06G001199 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452459.1	2.4e-08	100.00	PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo]	[more]
KGN61071.1	2.4e-08	100.00	hypothetical protein Csa_2G036690 [Cucumis sativus]	[more]
XP_023536821.1	2.4e-08	100.00	S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo]	[more]
CBI36591.3	7.0e-08	77.59	unnamed protein product, partial [Vitis vinifera]	[more]
CAN76947.1	1.2e-07	77.19	hypothetical protein VITISV_017166 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012511	AdoMetDC_leader

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006557	S-adenosylmethioninamine biosynthetic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
biological_process	GO:0097164	ammonium ion metabolic process
biological_process	GO:0006596	polyamine biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001199	Bhi06M001199	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 8..58 e-value: 1.4E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR35727	FAMILY NOT NAMED	coord: 4..58
None	No IPR available	PANTHER	PTHR35727:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 11	coord: 4..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G001199	Csa2G036690	Cucumber (Chinese Long) v2	cuwgoB136
Bhi06G001199	CSPI02G05400	Wild cucumber (PI 183967)	cpiwgoB138
Bhi06G001199	CmaCh05G010170	Cucurbita maxima (Rimu)	cmawgoB0918
Bhi06G001199	CmoCh05G010330	Cucurbita moschata (Rifu)	cmowgoB0920
Bhi06G001199	CmoCh12G008410	Cucurbita moschata (Rifu)	cmowgoB0172
Bhi06G001199	Lsi11G007050	Bottle gourd (USVL1VR-Ls)	lsiwgoB109
Bhi06G001199	Cp4.1LG00g04500	Cucurbita pepo (Zucchini)	cpewgoB0008
Bhi06G001199	Cp4.1LG11g08230	Cucurbita pepo (Zucchini)	cpewgoB0116
Bhi06G001199	Cp4.1LG07g06910	Cucurbita pepo (Zucchini)	cpewgoB1007
Bhi06G001199	Carg11956	Silver-seed gourd	carwgoB0671
Bhi06G001199	Carg16415	Silver-seed gourd	carwgoB1054
Bhi06G001199	CsaV3_2G007760	Cucumber (Chinese Long) v3	cucwgoB145
Bhi06G001199	Cla97C11G218580	Watermelon (97103) v2	wgowmbB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G001199	Wax gourd	wgowgoB047
Bhi06G001199	Cucumber (Gy14) v1	cgywgoB114
Bhi06G001199	Cucumber (Gy14) v2	cgybwgoB006
Bhi06G001199	Cucumber (Gy14) v2	cgybwgoB132
Bhi06G001199	Cucurbita maxima (Rimu)	cmawgoB0047
Bhi06G001199	Cucurbita maxima (Rimu)	cmawgoB0098
Bhi06G001199	Cucurbita maxima (Rimu)	cmawgoB0178
Bhi06G001199	Cucurbita moschata (Rifu)	cmowgoB0041
Bhi06G001199	Cucurbita moschata (Rifu)	cmowgoB0092
Bhi06G001199	Cucurbita pepo (Zucchini)	cpewgoB0435
Bhi06G001199	Cucurbita pepo (Zucchini)	cpewgoB0833
Bhi06G001199	Wild cucumber (PI 183967)	cpiwgoB006
Bhi06G001199	Cucumber (Chinese Long) v3	cucwgoB006
Bhi06G001199	Melon (DHL92) v3.6.1	medwgoB267
Bhi06G001199	Melon (DHL92) v3.6.1	medwgoB456
Bhi06G001199	Melon (DHL92) v3.5.1	mewgoB266
Bhi06G001199	Melon (DHL92) v3.5.1	mewgoB453
Bhi06G001199	Watermelon (Charleston Gray)	wcgwgoB142
Bhi06G001199	Watermelon (97103) v1	wgowmB156
Bhi06G001199	Watermelon (Charleston Gray)	wcgwgoB511
Bhi06G001199	Watermelon (97103) v2	wgowmbB141
Bhi06G001199	Watermelon (97103) v1	wgowmB138
Bhi06G001199	Silver-seed gourd	carwgoB0156
Bhi06G001199	Silver-seed gourd	carwgoB0616