CsaV3_2G007760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G007760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	S-adenosylmethionine decarboxylase proenzyme-like
Location	chr2 : 4025645 .. 4025818 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGCGTGGATGTTGTAATGGAGACGAAAGGCGGTAAGAAGAAATCTAATAGTAGTAGTAGTAGCAAGAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCTCACGGTGGCATTGAGAAGTTCCGATCTGCTGCTTATTCAAAT

mRNA sequence

AGAAGAAGCGTGGATGTTGTAATGGAGACGAAAGGCGGTAAGAAGAAATCTAATAGTAGTAGTAGTAGCAAGAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCTCACGGTGGCATTGAGAAGTTCCGATCTGCTGCTTATTCAAAT

Coding sequence (CDS)

AGAAGAAGCGTGGATGTTGTAATGGAGACGAAAGGCGGTAAGAAGAAATCTAATAGTAGTAGTAGTAGCAAGAGTAGTAAAAGGCAACAATACGAAGCTCCTCTTGGTTACATTATTGAAGACGTTCGTCCTCACGGTGGCATTGAGAAGTTCCGATCTGCTGCTTATTCAAAT

Protein sequence

RRSVDVVMETKGGKKKSNSSSSSKSSKRQQYEAPLGYIIEDVRPHGGIEKFRSAAYSN

Homology

[Close]

BLAST of CsaV3_2G007760 vs. NCBI nr
Match: CBI36591.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 9.1e-08
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   RRSVDVVMETKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
           ++SVDVVMETK      XXXXXXXXXXX  YE PLGYIIEDVRP+GGIEKFRSAAYSN
Sbjct: 78  KQSVDVVMETK------XXXXXXXXXXXLQYEVPLGYIIEDVRPNGGIEKFRSAAYSN 129

[Close]

BLAST of CsaV3_2G007760 vs. NCBI nr
Match: CAN76947.1 (hypothetical protein VITISV_017166 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 45/57 (78.95%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 2   RSVDVVMETKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
           +SVDVVMETK       XXXXXXXXXX  YE PLGYIIEDVRP+GGIEKFRSAAYSN
Sbjct: 492 QSVDVVMETK------GXXXXXXXXXXLQYEVPLGYIIEDVRPNGGIEKFRSAAYSN 542

[Close]

BLAST of CsaV3_2G007760 vs. NCBI nr
Match: KGN61071.1 (hypothetical protein Csa_2G036690 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 8  METKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          METK XXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 1  METKGXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 51

[Close]

BLAST of CsaV3_2G007760 vs. NCBI nr
Match: XP_008452459.1 (PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 31 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 23 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 50

[Close]

BLAST of CsaV3_2G007760 vs. NCBI nr
Match: XP_023536821.1 (S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 31 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 23 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 50

[Close]

BLAST of CsaV3_2G007760 vs. TAIR10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9)

HSP 1 Score: 52.8 bits (125), Expect = 8.5e-08
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 31 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          YEAPLGY IEDVRP+GGI+KF+S+ YSN
Sbjct: 19 YEAPLGYSIEDVRPNGGIKKFKSSVYSN 46

[Close]

BLAST of CsaV3_2G007760 vs. TAIR10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-07
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 31 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          +EAPL Y IEDVRP+GGI+KFRSAAYSN
Sbjct: 21 FEAPLRYSIEDVRPNGGIKKFRSAAYSN 48

[Close]

BLAST of CsaV3_2G007760 vs. TAIR10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-07
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 31 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          YEAPLGY IEDVRP GGI+KF+S+ YSN
Sbjct: 18 YEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

[Close]

BLAST of CsaV3_2G007760 vs. TrEMBL
Match: tr|A5BJ64|A5BJ64_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017166 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 45/57 (78.95%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 2   RSVDVVMETKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
           +SVDVVMETK       XXXXXXXXXX  YE PLGYIIEDVRP+GGIEKFRSAAYSN
Sbjct: 492 QSVDVVMETK------GXXXXXXXXXXLQYEVPLGYIIEDVRPNGGIEKFRSAAYSN 542

[Close]

BLAST of CsaV3_2G007760 vs. TrEMBL
Match: tr|A0A0A0LM83|A0A0A0LM83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 8  METKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          METK XXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 1  METKGXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 51

[Close]

BLAST of CsaV3_2G007760 vs. TrEMBL
Match: tr|A0A1S3BUN9|A0A1S3BUN9_CUCME (S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo OX=3656 GN=LOC103493485 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 31 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          YEAPLGYIIEDVRPHGGIEKFRSAAYSN
Sbjct: 23 YEAPLGYIIEDVRPHGGIEKFRSAAYSN 50

[Close]

BLAST of CsaV3_2G007760 vs. TrEMBL
Match: tr|A0A2P4L5H9|A0A2P4L5H9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_40353 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 2  RSVDVVMETKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          +SV+VVMETK      XXXXXXXXXX   YE PLGYIIEDVRP+GGIEKFRSAAYSN
Sbjct: 20 KSVNVVMETK-----GXXXXXXXXXXSKQYEVPLGYIIEDVRPNGGIEKFRSAAYSN 71

[Close]

BLAST of CsaV3_2G007760 vs. TrEMBL
Match: tr|A0A200QGC0|A0A200QGC0_9MAGN (S-adenosyl-l-methionine decarboxylase leader peptide OS=Macleaya cordata OX=56857 GN=BVC80_1353g2 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 1  RRSVDVVMETKXXXXXXXXXXXXXXXXXXXYEAPLGYIIEDVRPHGGIEKFRSAAYSN 59
          + SVDV+ME+K                   YEAPLGY IEDVRP+GGIEKFRSAAYSN
Sbjct: 4  QESVDVLMESK-------GGKKSSSSSSLQYEAPLGYSIEDVRPNGGIEKFRSAAYSN 54

The following BLAST results are available for this feature:

BLAST of CsaV3_2G007760 vs. NCBI nr


Match Name	E-value	Identity	Description
CBI36591.3	9.1e-08	79.31	unnamed protein product, partial [Vitis vinifera]	[more]
CAN76947.1	1.5e-07	78.95	hypothetical protein VITISV_017166 [Vitis vinifera]	[more]
KGN61071.1	2.0e-07	98.04	hypothetical protein Csa_2G036690 [Cucumis sativus]	[more]
XP_008452459.1	3.4e-07	100.00	PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis melo]	[more]
XP_023536821.1	3.4e-07	100.00	S-adenosylmethionine decarboxylase proenzyme-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_2G007760 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02468.1	8.5e-08	78.57	conserved peptide upstream open reading frame 9	[more]
AT3G25572.1	1.4e-07	82.14	conserved peptide upstream open reading frame 11	[more]
AT5G15948.1	1.4e-07	78.57	conserved peptide upstream open reading frame 10	[more]

BLAST of CsaV3_2G007760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G007760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5BJ64\|A5BJ64_VITVI	1.0e-07	78.95	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017166 PE=4 SV=1	[more]
tr\|A0A0A0LM83\|A0A0A0LM83_CUCSA	1.3e-07	98.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036690 PE=4 SV=1	[more]
tr\|A0A1S3BUN9\|A0A1S3BUN9_CUCME	2.3e-07	100.00	S-adenosylmethionine decarboxylase proenzyme-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2P4L5H9\|A0A2P4L5H9_QUESU	3.0e-07	77.19	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_40353 PE=4 SV=1	[more]
tr\|A0A200QGC0\|A0A200QGC0_9MAGN	1.1e-06	56.90	S-adenosyl-l-methionine decarboxylase leader peptide OS=Macleaya cordata OX=5685...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012511	AdoMetDC_leader

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
biological_process	GO:0097164	ammonium ion metabolic process
biological_process	GO:0006596	polyamine biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G007760.1	CsaV3_2G007760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 8..58 e-value: 1.2E-23 score: 82.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..30
None	No IPR available	PANTHER	PTHR35727:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 11	coord: 4..58
None	No IPR available	PANTHER	PTHR35727	FAMILY NOT NAMED	coord: 4..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G007760	CSPI02G05400	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G007760	CmoCh12G008410	Cucurbita moschata (Rifu)	cmocucB0187
CsaV3_2G007760	Cp4.1LG07g06910	Cucurbita pepo (Zucchini)	cpecucB1017
CsaV3_2G007760	Cp4.1LG00g04500	Cucurbita pepo (Zucchini)	cpecucB0009
CsaV3_2G007760	Carg11956	Silver-seed gourd	carcucB0598
CsaV3_2G007760	Carg16415	Silver-seed gourd	carcucB0952
CsaV3_2G007760	Lsi11G007050	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G007760	Cla97C11G218580	Watermelon (97103) v2	cucwmbB114
CsaV3_2G007760	Bhi06G001199	Wax gourd	cucwgoB145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G007760	Cucumber (Chinese Long) v3	cuccucB008
CsaV3_2G007760	Silver-seed gourd	carcucB0148
CsaV3_2G007760	Silver-seed gourd	carcucB0538
CsaV3_2G007760	Cucurbita maxima (Rimu)	cmacucB0934
CsaV3_2G007760	Cucumber (Gy14) v2	cgybcucB017
CsaV3_2G007760	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G007760	Cucumber (Gy14) v1	cgycucB097
CsaV3_2G007760	Cucurbita maxima (Rimu)	cmacucB0083
CsaV3_2G007760	Cucurbita maxima (Rimu)	cmacucB0205
CsaV3_2G007760	Cucurbita maxima (Rimu)	cmacucB0136
CsaV3_2G007760	Cucurbita moschata (Rifu)	cmocucB0072
CsaV3_2G007760	Cucurbita moschata (Rifu)	cmocucB0122
CsaV3_2G007760	Cucurbita moschata (Rifu)	cmocucB0924
CsaV3_2G007760	Cucurbita pepo (Zucchini)	cpecucB0115
CsaV3_2G007760	Cucurbita pepo (Zucchini)	cpecucB0452
CsaV3_2G007760	Cucurbita pepo (Zucchini)	cpecucB0827
CsaV3_2G007760	Wild cucumber (PI 183967)	cpicucB020
CsaV3_2G007760	Bottle gourd (USVL1VR-Ls)	cuclsiB146
CsaV3_2G007760	Melon (DHL92) v3.5.1	cucmeB118
CsaV3_2G007760	Melon (DHL92) v3.5.1	cucmeB141
CsaV3_2G007760	Melon (DHL92) v3.6.1	cucmedB111
CsaV3_2G007760	Melon (DHL92) v3.6.1	cucmedB134
CsaV3_2G007760	Watermelon (Charleston Gray)	cucwcgB119
CsaV3_2G007760	Watermelon (Charleston Gray)	cucwcgB158
CsaV3_2G007760	Watermelon (97103) v1	cucwmB175
CsaV3_2G007760	Watermelon (97103) v1	cucwmB182
CsaV3_2G007760	Watermelon (97103) v2	cucwmbB145
CsaV3_2G007760	Wax gourd	cucwgoB221