Carg13975 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13975
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Vacuolar fusion protein
Location	Cucurbita_argyrosperma_scaffold_097 : 112264 .. 112503 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACTTTCTTATGCGTTCCTCCACCGGGTTCCTTCTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA

mRNA sequence

ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACTTTCTTATGCGTTCCTCCACCGGGTTCCTTCTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA

Coding sequence (CDS)

ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACTTTCTTATGCGTTCCTCCACCGGGTTCCTTCTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA

Protein sequence

MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVPPPGSFYYYYYSSDYDSSSE

Homology

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BLAST of Carg13975 vs. NCBI nr
Match: XP_022958637.1 (uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958638.1 uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958640.1 uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_023533512.1 uncharacterized protein LOC111795367 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 9.4e-24
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVX 60
          MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVX
Sbjct: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVX 60

Query: 61 XXXXXXXXXXXXXXDSSSE 80
          XXXXXXXXXXXXXXDSSSE
Sbjct: 61 XXXXXXXXXXXXXXDSSSE 79

[Close]

BLAST of Carg13975 vs. NCBI nr
Match: XP_022153861.1 (uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153863.1 uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153864.1 uncharacterized protein LOC111021275 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 6.5e-17
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTF 57
          MVF+SLIVLSVAHLSADASQCIA  PDRLTSHQLLY+LF +PLQQLSRLALS WTF
Sbjct: 1  MVFSSLIVLSVAHLSADASQCIACFPDRLTSHQLLYLLFGFPLQQLSRLALSFWTF 56

[Close]

BLAST of Carg13975 vs. NCBI nr
Match: KGN54022.1 (hypothetical protein Csa_4G268060 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 8.0e-15
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 4   NSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
           N  IVLSVAHLSADASQ IAR PD LTSHQLLY+LF++PLQQLSRLALS+WT  CV
Sbjct: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCV 115

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BLAST of Carg13975 vs. NCBI nr
Match: PON98040.1 (hypothetical protein TorRG33x02_061140 [Trema orientalis])

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
          MVFNSL+VLSVAH+SADA QC+A  P+RL+SHQLL ++F +PLQQL RLAL +WTFLC+
Sbjct: 1  MVFNSLLVLSVAHVSADAWQCLACFPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLCL 59

[Close]

BLAST of Carg13975 vs. NCBI nr
Match: XP_015878844.1 (uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878845.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878847.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878848.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878849.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878850.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878851.1 uncharacterized protein LOC107415082 [Ziziphus jujuba])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
          MVFNS++VLSVAH+SADA QC+   PDRL+SHQLL ++  +PLQQL RLAL +WTFLC+
Sbjct: 1  MVFNSMLVLSVAHVSADAWQCLTCIPDRLSSHQLLDLICCFPLQQLGRLALCLWTFLCL 59

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BLAST of Carg13975 vs. TAIR10
Match: AT1G55365.1 (unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSP--DRLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 60
          MVFNS +V++VA +S D  Q I R P   R+ + QL  +   +P+ QLSR  L +WTF+C
Sbjct: 1  MVFNSAMVMAVAEVSTDTWQLIWRVPSSQRIDTEQLFDIAVCFPIHQLSRFVLCLWTFMC 60

[Close]

BLAST of Carg13975 vs. TAIR10
Match: AT5G56520.1 (unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-06
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSP--DRLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 60
          MVF    V+SVAH+SA+  Q +   P  DR++S ++L ++  +PLQQL R  L  W ++C
Sbjct: 1  MVFRGDTVVSVAHISAEIFQRLRWIPPSDRISSGEMLQLVCCFPLQQLGRFVLWFWNYIC 60

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BLAST of Carg13975 vs. TrEMBL
Match: tr|A0A0A0L0B8|A0A0A0L0B8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268060 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-15
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 4   NSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
           N  IVLSVAHLSADASQ IAR PD LTSHQLLY+LF++PLQQLSRLALS+WT  CV
Sbjct: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCV 115

[Close]

BLAST of Carg13975 vs. TrEMBL
Match: tr|A0A2P5FJR7|A0A2P5FJR7_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061140 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-14
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
          MVFNSL+VLSVAH+SADA QC+A  P+RL+SHQLL ++F +PLQQL RLAL +WTFLC+
Sbjct: 1  MVFNSLLVLSVAHVSADAWQCLACFPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLCL 59

[Close]

BLAST of Carg13975 vs. TrEMBL
Match: tr|W9SZJ5|W9SZJ5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019129 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
          MVFNSL+V+SVAH SADA QC+A  P+RL+SHQLL ++  +PLQQL RLAL IWTFLC+
Sbjct: 1  MVFNSLMVMSVAHASADAWQCLACLPERLSSHQLLDLVLCFPLQQLGRLALCIWTFLCL 59

[Close]

BLAST of Carg13975 vs. TrEMBL
Match: tr|A0A2N9H8X0|A0A2N9H8X0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36003 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
          MVFNSLIVLSVAH+SADA QCIA  P+RL+S+QLL ++  +PLQQL RLAL +WTFLC+
Sbjct: 1  MVFNSLIVLSVAHVSADAWQCIACMPERLSSNQLLDLICCFPLQQLGRLALCLWTFLCL 59

[Close]

BLAST of Carg13975 vs. TrEMBL
Match: tr|A0A2P4LQ17|A0A2P4LQ17_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_22871 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCV 60
           MVFNSL+VLSVAH+SADA Q IA +P+RL+SHQLL ++  +PLQQL RLAL +WTFLC+
Sbjct: 51  MVFNSLMVLSVAHVSADAWQYIACNPERLSSHQLLDLICCFPLQQLGRLALCLWTFLCL 109

The following BLAST results are available for this feature:

BLAST of Carg13975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958637.1	9.4e-24	100.00	uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958638.1 unchar...	[more]
XP_022153861.1	6.5e-17	87.50	uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153863.1 uncha...	[more]
KGN54022.1	8.0e-15	80.36	hypothetical protein Csa_4G268060 [Cucumis sativus]	[more]
PON98040.1	5.2e-14	71.19	hypothetical protein TorRG33x02_061140 [Trema orientalis]	[more]
XP_015878844.1	5.7e-13	67.80	uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878845.1 uncharact...	[more]

BLAST of Carg13975 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55365.1	1.5e-07	44.26	unknown protein	[more]
AT5G56520.1	2.8e-06	42.62	unknown protein	[more]

BLAST of Carg13975 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13975 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0B8\|A0A0A0L0B8_CUCSA	5.3e-15	80.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268060 PE=4 SV=1	[more]
tr\|A0A2P5FJR7\|A0A2P5FJR7_9ROSA	3.4e-14	71.19	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061140 PE=4 S...	[more]
tr\|W9SZJ5\|W9SZJ5_9ROSA	3.8e-13	69.49	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019129 PE=4 SV=1	[more]
tr\|A0A2N9H8X0\|A0A2N9H8X0_FAGSY	3.8e-13	71.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36003 PE=4 SV=1	[more]
tr\|A0A2P4LQ17\|A0A2P4LQ17_QUESU	1.4e-12	69.49	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_22871 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13975-RA	Carg13975-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104:SF2	SUBFAMILY NOT NAMED	coord: 1..79
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 1..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13975	Cla003126	Watermelon (97103) v1	carwmB0505
Carg13975	Csa4G268060	Cucumber (Chinese Long) v2	carcuB0535
Carg13975	MELO3C014726	Melon (DHL92) v3.5.1	carmeB0512
Carg13975	ClCG02G024390	Watermelon (Charleston Gray)	carwcgB0493
Carg13975	CSPI04G12530	Wild cucumber (PI 183967)	carcpiB0542
Carg13975	Cucsa.152720	Cucumber (Gy14) v1	carcgyB0580
Carg13975	Lsi10G009200	Bottle gourd (USVL1VR-Ls)	carlsiB458
Carg13975	Cp4.1LG05g05660	Cucurbita pepo (Zucchini)	carcpeB0718
Carg13975	Cla97C02G050650	Watermelon (97103) v2	carwmbB0531
Carg13975	Bhi10G000400	Wax gourd	carwgoB0618

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13975	Cucumber (Chinese Long) v3	carcucB0539
Carg13975	Melon (DHL92) v3.6.1	carmedB0518
Carg13975	Cucumber (Gy14) v2	carcgybB0511
Carg13975	Cucurbita maxima (Rimu)	carcmaB0716
Carg13975	Cucurbita moschata (Rifu)	carcmoB0694