Csa4G268060 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G268060
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 10585536 .. 10586002 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTGACCTCTTACTTTCTCTACGCCGAAAATCCCGAACGTGGAGTCCGTCGCCACAACAACAGATTTGGGCACCAAATTAGGAAAGGAAAATGGAGCGAAGGGATGAAAAAGGGGAAGAGCGAAGTCAAATGGAAGCCGAAAAGCAGAAACTCCTTCCAGAACGGAGAGCCTAATCAGTAAATCAGGAATATTAATCTGACTAAGCTATGGTATTTTGCAGCTTTATAGTCTTATCGGTCGCTCATTTATCAGCGGATGCTTCGCAATCCATTGCTCGCTTTCCAGATCCCCTCACCAGCCACCAACTTCTTTACCTTCTCTTCGCTTTCCCTCTTCAACAGCTCTCTCGCCTTGCCCTCTCTCTTTGGACCTTATTCTGTGTTCCTCCACCTGGTTCTTTCTACTATTACTACTATTCCTCTGACTCTGATCTCTCTTCCTACGACTATGCTTCCGATTGA

mRNA sequence

ATGTTTTTGACCTCTTACTTTCTCTACGCCGAAAATCCCGAACGTGGAGTCCGTCGCCACAACAACAGATTTGGGCACCAAATTAGGAAAGGAAAATGGAGCGAAGGGATGAAAAAGGGGAAGAGCGAAGTCAAATGGAAGCCGAAAAGCAGAAACTCCTTCCAGAACGGAGAGCCTAATCACTTTATAGTCTTATCGGTCGCTCATTTATCAGCGGATGCTTCGCAATCCATTGCTCGCTTTCCAGATCCCCTCACCAGCCACCAACTTCTTTACCTTCTCTTCGCTTTCCCTCTTCAACAGCTCTCTCGCCTTGCCCTCTCTCTTTGGACCTTATTCTGTGTTCCTCCACCTGGTTCTTTCTACTATTACTACTATTCCTCTGACTCTGATCTCTCTTCCTACGACTATGCTTCCGATTGA

Coding sequence (CDS)

ATGTTTTTGACCTCTTACTTTCTCTACGCCGAAAATCCCGAACGTGGAGTCCGTCGCCACAACAACAGATTTGGGCACCAAATTAGGAAAGGAAAATGGAGCGAAGGGATGAAAAAGGGGAAGAGCGAAGTCAAATGGAAGCCGAAAAGCAGAAACTCCTTCCAGAACGGAGAGCCTAATCACTTTATAGTCTTATCGGTCGCTCATTTATCAGCGGATGCTTCGCAATCCATTGCTCGCTTTCCAGATCCCCTCACCAGCCACCAACTTCTTTACCTTCTCTTCGCTTTCCCTCTTCAACAGCTCTCTCGCCTTGCCCTCTCTCTTTGGACCTTATTCTGTGTTCCTCCACCTGGTTCTTTCTACTATTACTACTATTCCTCTGACTCTGATCTCTCTTCCTACGACTATGCTTCCGATTGA

Protein sequence

MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPNHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGSFYYYYYSSDSDLSSYDYASD*

Homology

[Close]

BLAST of Csa4G268060 vs. TrEMBL
Match: A0A0A0L0B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268060 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.1e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPN 60
           MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPN
Sbjct: 1   MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPN 60

Query: 61  HFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGS 120
           HFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGS
Sbjct: 61  HFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGS 120

Query: 121 FYYYYYSSDSDLSSYDYASD 141
           FYYYYYSSDSDLSSYDYASD
Sbjct: 121 FYYYYYSSDSDLSSYDYASD 140

[Close]

BLAST of Csa4G268060 vs. TrEMBL
Match: M5W0H4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012539mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119
           N  +V+SVAH S +  Q +A  P+ L+SHQLL L+F FPLQQL RLAL LWT  CVPPP 
Sbjct: 77  NSLMVVSVAHTSTEMWQYLACLPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLCVPPPD 136

Query: 120 SFYYYYYSSDSDLSS 135
           S+Y Y Y SDSD SS
Sbjct: 137 SYYSYSY-SDSDASS 150

[Close]

BLAST of Csa4G268060 vs. TrEMBL
Match: B9SBP8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0343440 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 48/84 (57.14%), Postives = 54/84 (64.29%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFP--DPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPP 119
           N  I+ SVAH SAD  Q IAR    D ++SHQLL L+  FPLQQL   AL LWT  C+PP
Sbjct: 4   NSLIIASVAHTSADLWQEIARIQVQDRISSHQLLDLICCFPLQQLGSFALWLWTFLCLPP 63

Query: 120 PGSFY-YYYYSSDSDLSSYDYASD 141
           P SFY Y YYSS +  SS DY  D
Sbjct: 64  PDSFYPYTYYSSTTTTSSSDYGLD 87

[Close]

BLAST of Csa4G268060 vs. TrEMBL
Match: W9SZJ5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019129 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119
           N  +V+SVAH SADA Q +A  P+ L+SHQLL L+  FPLQQL RLAL +WT  C+PPP 
Sbjct: 4   NSLMVMSVAHASADAWQCLACLPERLSSHQLLDLVLCFPLQQLGRLALCIWTFLCLPPPD 63

Query: 120 SFYYYYYSSDSDLSS 135
           +   Y YSSD   SS
Sbjct: 64  TLNSYSYSSDDSDSS 78

[Close]

BLAST of Csa4G268060 vs. TrEMBL
Match: B9GLC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04070g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIA--RFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPP 119
           N  IVLSVAH+SAD  Q IA  RF D ++SHQLL L+  FPLQQL RLAL +WT  C+PP
Sbjct: 4   NSLIVLSVAHVSADVWQQIACIRFQDRVSSHQLLDLVCCFPLQQLGRLALFVWTFLCLPP 63

Query: 120 PGSFY--YYYYSSDSD 132
           P SF   Y YYS+ SD
Sbjct: 64  PDSFLSSYSYYSTSSD 79

[Close]

BLAST of Csa4G268060 vs. TAIR10
Match: AT1G55365.1 (AT1G55365.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-09
Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFPDP--LTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPP 119
           N  +V++VA +S D  Q I R P    + + QL  +   FP+ QLSR  L LWT  C+P 
Sbjct: 4   NSAMVMAVAEVSTDTWQLIWRVPSSQRIDTEQLFDIAVCFPIHQLSRFVLCLWTFMCLPS 63

Query: 120 PGSFYYYYYSSDSDLSSYDYASD 141
             SFY Y Y + S  SS +   D
Sbjct: 64  SDSFYSYTYETLSASSSSEADDD 86

[Close]

BLAST of Csa4G268060 vs. TAIR10
Match: AT5G56520.1 (AT5G56520.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-09
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 1


Query: 64  VLSVAHLSADASQSIARFP--DPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGSF 123
           V+SVAH+SA+  Q +   P  D ++S ++L L+  FPLQQL R  L  W   CVPPP   
Sbjct: 8   VVSVAHISAEIFQRLRWIPPSDRISSGEMLQLVCCFPLQQLGRFVLWFWNYICVPPPEIL 67

Query: 124 YYYYYSSDSD 132
           Y+     D D
Sbjct: 68  YFDGRRDDDD 77

[Close]

BLAST of Csa4G268060 vs. NCBI nr
Match: gi|700198864|gb|KGN54022.1| (hypothetical protein Csa_4G268060 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 8.8e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPN 60
           MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPN
Sbjct: 1   MFLTSYFLYAENPERGVRRHNNRFGHQIRKGKWSEGMKKGKSEVKWKPKSRNSFQNGEPN 60

Query: 61  HFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGS 120
           HFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGS
Sbjct: 61  HFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGS 120

Query: 121 FYYYYYSSDSDLSSYDYASD 141
           FYYYYYSSDSDLSSYDYASD
Sbjct: 121 FYYYYYSSDSDLSSYDYASD 140

[Close]

BLAST of Csa4G268060 vs. NCBI nr
Match: gi|659097940|ref|XP_008449890.1| (PREDICTED: uncharacterized protein LOC103491633 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 63  IVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGSFY 122
           IVLSVAHLSAD SQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWT FCVPPPGSFY
Sbjct: 7   IVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVPPPGSFY 66

Query: 123 YYYYSSDSDLSSYDYASD 141
           YYYYSSDSDLSSY YASD
Sbjct: 67  YYYYSSDSDLSSYAYASD 84

[Close]

BLAST of Csa4G268060 vs. NCBI nr
Match: gi|1009124014|ref|XP_015878844.1| (PREDICTED: uncharacterized protein LOC107415082 [Ziziphus jujuba])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119
           N  +VLSVAH+SADA Q +   PD L+SHQLL L+  FPLQQL RLAL LWT  C+PPP 
Sbjct: 4   NSMLVLSVAHVSADAWQCLTCIPDRLSSHQLLDLICCFPLQQLGRLALCLWTFLCLPPPD 63

Query: 120 SFYYYYYS-SDSDLSSYDY 138
           SFY Y Y+ SD   ++ DY
Sbjct: 64  SFYSYAYTDSDDSSTTVDY 82

[Close]

BLAST of Csa4G268060 vs. NCBI nr
Match: gi|694315516|ref|XP_009375970.1| (PREDICTED: uncharacterized protein LOC103964725 [Pyrus x bretschneideri])

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119
           N  +V SVAHLSA+  Q +A  P+ ++SHQLL L+F FPLQQL RLA  LWT  CVPPP 
Sbjct: 4   NSVMVESVAHLSAEMWQELACLPERMSSHQLLDLIFCFPLQQLGRLAFCLWTFLCVPPPD 63

Query: 120 SFYYYYYSSDSDLSS 135
           S YYYY SSDSD SS
Sbjct: 64  S-YYYYSSSDSDDSS 77

[Close]

BLAST of Csa4G268060 vs. NCBI nr
Match: gi|657951143|ref|XP_008351351.1| (PREDICTED: uncharacterized protein LOC103414759 [Malus domestica])

HSP 1 Score: 92.4 bits (228), Expect = 6.6e-16
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119
           N  +V SVAHLSA+  Q +A  P+ ++SHQLL L+F FPLQQL RLA  LWT  CVPPP 
Sbjct: 4   NSVMVESVAHLSAEMWQYLACLPERMSSHQLLDLIFCFPLQQLGRLAFCLWTFLCVPPPD 63

Query: 120 SFYYYYYSSDSDLSS 135
           S YYYY SSDSD SS
Sbjct: 64  S-YYYYSSSDSDDSS 77

The following BLAST results are available for this feature:

BLAST of Csa4G268060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0B8_CUCSA	6.1e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268060 PE=4 SV=1	[more]
M5W0H4_PRUPE	2.3e-15	61.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012539mg PE=4 SV=1	[more]
B9SBP8_RICCO	1.5e-14	57.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0343440 PE=4 SV=1	[more]
W9SZJ5_9ROSA	1.9e-14	57.33	Uncharacterized protein OS=Morus notabilis GN=L484_019129 PE=4 SV=1	[more]
B9GLC9_POPTR	2.5e-14	61.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04070g PE=4 SV=1	[more]

BLAST of Csa4G268060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55365.1	3.7e-09	39.76	unknown protein	[more]
AT5G56520.1	4.9e-09	42.86	unknown protein	[more]

BLAST of Csa4G268060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198864\|gb\|KGN54022.1\|	8.8e-77	100.00	hypothetical protein Csa_4G268060 [Cucumis sativus]	[more]
gi\|659097940\|ref\|XP_008449890.1\|	1.1e-34	96.15	PREDICTED: uncharacterized protein LOC103491633 [Cucumis melo]	[more]
gi\|1009124014\|ref\|XP_015878844.1\|	3.0e-16	59.49	PREDICTED: uncharacterized protein LOC107415082 [Ziziphus jujuba]	[more]
gi\|694315516\|ref\|XP_009375970.1\|	3.9e-16	64.00	PREDICTED: uncharacterized protein LOC103964725 [Pyrus x bretschneideri]	[more]
gi\|657951143\|ref\|XP_008351351.1\|	6.6e-16	64.00	PREDICTED: uncharacterized protein LOC103414759 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G268060.1	Csa4G268060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 60..140 score: 4.3
None	No IPR available	PANTHER	PTHR35104:SF1	SUBFAMILY NOT NAMED	coord: 60..140 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G268060	Cla003126	Watermelon (97103) v1	cuwmB347
Csa4G268060	MELO3C014726	Melon (DHL92) v3.5.1	cumeB295
Csa4G268060	ClCG02G024390	Watermelon (Charleston Gray)	cuwcgB292
Csa4G268060	Lsi10G009200	Bottle gourd (USVL1VR-Ls)	culsiB246
Csa4G268060	Cla97C02G050650	Watermelon (97103) v2	cuwmbB287
Csa4G268060	Bhi10G000400	Wax gourd	cuwgoB390
Csa4G268060	CSPI04G12530	Wild cucumber (PI 183967)	cpicuB181
Csa4G268060	Cucsa.152720	Cucumber (Gy14) v1	cgycuB220
Csa4G268060	Cp4.1LG05g05660	Cucurbita pepo (Zucchini)	cpecuB728
Csa4G268060	Carg13975	Silver-seed gourd	carcuB0535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G268060	Cucurbita pepo (Zucchini)	cpecuB278
Csa4G268060	Cucumber (Gy14) v2	cgybcuB168
Csa4G268060	Cucumber (Gy14) v2	cgybcuB174
Csa4G268060	Melon (DHL92) v3.6.1	cumedB279
Csa4G268060	Cucurbita maxima (Rimu)	cmacuB549
Csa4G268060	Cucurbita maxima (Rimu)	cmacuB605
Csa4G268060	Cucurbita moschata (Rifu)	cmocuB538
Csa4G268060	Cucurbita moschata (Rifu)	cmocuB596