Cla97C02G050650 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G050650
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	At5g56520
Location	Cla97Chr02 : 37746268 .. 37747518 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTAACAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGGATGCTTCGCAATGCATTGCTCGCTTTCCAGATCGCCTCACGAGCCACCAACTTCTTTACCTTCTCTTCGGTTTCCCTCTTCAACAGCTCTCTCACCTTGCCCTCTCTCTTTGGACCTTCTTCTGTGTTCCTCCTCCTGGTTCCTTCTACTATTACTACCCCTCTGACTCCGACGTCTCTTCTTACGACTATGCTTCCGACTGACTTTTGTTTCTGGTAATTTTCTCCCCTTTTCTTCATTGATGAGATGGCGCCTTTCCAATTTCTGCTTCTGGGTTTTCATTTTTCCTTTGCCGGAGTACGGTTATCTGTGCTTTGTATTATAATACAATAATTAATCTGCTCATGTTGTATCTCCTACATTTCAAATTATTGCATTCTTTGTGGTTTTCCGGCTACCACTTAATTTTATTAAATCTTCGTTGTGATCGTGGTCAATGGACATGGTTAACTAAAGAGTCATTATACTACCTCTTTTCTTGGGCTTCATCATAAATATCATACACATGCTTAATATTTGAAATGGAGATGTGCTCATTTTACTCTCTAGCTAACGGATTTCACTTTTATTGGCTATGTTGTTGGAGGAGGGTAGAACTTTAGTCACAACGAAAGCCTTCTTTTTACTTTTCCCATTTTCTTGCCCCCACCATTGTAGAATGTGATCAATTGGCATTGCATTTAAAAGCTCAAGTTCTTAGATCAACTCCAAAACATGGATGATTAGTATGAAGAGAGGAAGGGAATAACTCTTGAGGAATTTGAACTTGGGGTCTGGACAATGCCACTACACTCAAATAATTATCTTGTAGGCTAGTATAAAAATGTAATTGACTTAGTAAAATATTTCCAGTGGTACGATTAAGATTATCTGTGAGATCTAAAAATCATAATTATGACAAAGAAAAGAATTTTCTTTCCTTTGTTTTATTATTGTTGTTACAATTGCATTCCTTTTATTTGTTGTTGCCTATCCTTTCCTTTGTTTTATTGTTTATCACACTGTTCTTTTTTCTGTCTCCAATTCTTCTGCTTATATTTGTATCTACCACTTTCTCTCTTTCCATATCCAAGTTGGATTAAGCACAACTTTATTACGTATTTGGTCTTTCAGATCTTTTCTCAACAACAAGAAGCATATCCATCAGATATAGGAACGTTGTTTAATGTCCCAACACTTGAGAGACCTCTAATTATCTGTAG

mRNA sequence

ATGGTATTTAACAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGGATGCTTCGCAATGCATTGCTCGCTTTCCAGATCGCCTCACGAGCCACCAACTTCTTTACCTTCTCTTCGGTTTCCCTCTTCAACAGCTCTCTCACCTTGCCCTCTCTCTTTGGACCTTCTTCTGTGTTCCTCCTCCTGGTTCCTTCTACTATTACTACCCCTCTGACTCCGACATCTTTTCTCAACAACAAGAAGCATATCCATCAGATATAGGAACGTTGTTTAATGTCCCAACACTTGAGAGACCTCTAATTATCTGTAG

Coding sequence (CDS)

ATGGTATTTAACAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGGATGCTTCGCAATGCATTGCTCGCTTTCCAGATCGCCTCACGAGCCACCAACTTCTTTACCTTCTCTTCGGTTTCCCTCTTCAACAGCTCTCTCACCTTGCCCTCTCTCTTTGGACCTTCTTCTGTGTTCCTCCTCCTGGTTCCTTCTACTATTACTACCCCTCTGACTCCGACATCTTTTCTCAACAACAAGAAGCATATCCATCAGATATAGGAACGTTGTTTAATGTCCCAACACTTGAGAGACCTCTAATTATCTGTAG

Protein sequence

MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFCVPPPGSFYYYYPSDSDIFSQQQEAYPSDIGTLFNVPTLERPLIIC

Homology

[Close]

BLAST of Cla97C02G050650 vs. NCBI nr
Match: XP_022958637.1 (uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958638.1 uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958640.1 uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_023533512.1 uncharacterized protein LOC111795367 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 7.0e-19
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNSLIVLSVAHLSADASQCIAR PDRLTSHQLLY+LF +PLQQLS LALS+WTF C
Sbjct: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. NCBI nr
Match: XP_022153861.1 (uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153863.1 uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153864.1 uncharacterized protein LOC111021275 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-18
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTF 57
          MVF+SLIVLSVAHLSADASQCIA FPDRLTSHQLLYLLFGFPLQQLS LALS WTF
Sbjct: 1  MVFSSLIVLSVAHLSADASQCIACFPDRLTSHQLLYLLFGFPLQQLSRLALSFWTF 56

[Close]

BLAST of Cla97C02G050650 vs. NCBI nr
Match: KGN54022.1 (hypothetical protein Csa_4G268060 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 4.2e-16
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 4   NSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
           N  IVLSVAHLSADASQ IARFPD LTSHQLLYLLF FPLQQLS LALSLWT FC
Sbjct: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFC 114

[Close]

BLAST of Cla97C02G050650 vs. NCBI nr
Match: PON98040.1 (hypothetical protein TorRG33x02_061140 [Trema orientalis])

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNSL+VLSVAH+SADA QC+A FP+RL+SHQLL L+F FPLQQL  LAL LWTF C
Sbjct: 1  MVFNSLLVLSVAHVSADAWQCLACFPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. NCBI nr
Match: XP_015878844.1 (uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878845.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878847.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878848.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878849.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878850.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878851.1 uncharacterized protein LOC107415082 [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNS++VLSVAH+SADA QC+   PDRL+SHQLL L+  FPLQQL  LAL LWTF C
Sbjct: 1  MVFNSMLVLSVAHVSADAWQCLTCIPDRLSSHQLLDLICCFPLQQLGRLALCLWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. TrEMBL
Match: tr|A0A0A0L0B8|A0A0A0L0B8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268060 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-16
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 4   NSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
           N  IVLSVAHLSADASQ IARFPD LTSHQLLYLLF FPLQQLS LALSLWT FC
Sbjct: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFC 114

[Close]

BLAST of Cla97C02G050650 vs. TrEMBL
Match: tr|A0A2P5FJR7|A0A2P5FJR7_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061140 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNSL+VLSVAH+SADA QC+A FP+RL+SHQLL L+F FPLQQL  LAL LWTF C
Sbjct: 1  MVFNSLLVLSVAHVSADAWQCLACFPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. TrEMBL
Match: tr|A0A2N9H8X0|A0A2N9H8X0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36003 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNSLIVLSVAH+SADA QCIA  P+RL+S+QLL L+  FPLQQL  LAL LWTF C
Sbjct: 1  MVFNSLIVLSVAHVSADAWQCIACMPERLSSNQLLDLICCFPLQQLGRLALCLWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. TrEMBL
Match: tr|A0A2P5CT62|A0A2P5CT62_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_126780 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNSL+V SVAH+SADA QC+A FP+RL+SH LL L+F FPLQQL   A+ LWTF C
Sbjct: 1  MVFNSLLVQSVAHVSADAWQCLACFPERLSSHHLLDLVFCFPLQQLGRFAVCLWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. TrEMBL
Match: tr|W9SZJ5|W9SZJ5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019129 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFPDRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNSL+V+SVAH SADA QC+A  P+RL+SHQLL L+  FPLQQL  LAL +WTF C
Sbjct: 1  MVFNSLMVMSVAHASADAWQCLACLPERLSSHQLLDLVLCFPLQQLGRLALCIWTFLC 58

[Close]

BLAST of Cla97C02G050650 vs. TAIR10
Match: AT1G55365.1 (unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.5e-07
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFP--DRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVFNS +V++VA +S D  Q I R P   R+ + QL  +   FP+ QLS   L LWTF C
Sbjct: 1  MVFNSAMVMAVAEVSTDTWQLIWRVPSSQRIDTEQLFDIAVCFPIHQLSRFVLCLWTFMC 60

[Close]

BLAST of Cla97C02G050650 vs. TAIR10
Match: AT5G56520.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 1  MVFNSLIVLSVAHLSADASQCIARFP--DRLTSHQLLYLLFGFPLQQLSHLALSLWTFFC 59
          MVF    V+SVAH+SA+  Q +   P  DR++S ++L L+  FPLQQL    L  W + C
Sbjct: 1  MVFRGDTVVSVAHISAEIFQRLRWIPPSDRISSGEMLQLVCCFPLQQLGRFVLWFWNYIC 60

The following BLAST results are available for this feature:

BLAST of Cla97C02G050650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958637.1	7.0e-19	87.93	uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958638.1 unchar...	[more]
XP_022153861.1	1.6e-18	92.86	uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153863.1 uncha...	[more]
KGN54022.1	4.2e-16	87.27	hypothetical protein Csa_4G268060 [Cucumis sativus]	[more]
PON98040.1	2.3e-14	75.86	hypothetical protein TorRG33x02_061140 [Trema orientalis]	[more]
XP_015878844.1	1.3e-12	70.69	uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878845.1 uncharact...	[more]

BLAST of Cla97C02G050650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0B8\|A0A0A0L0B8_CUCSA	2.8e-16	87.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268060 PE=4 SV=1	[more]
tr\|A0A2P5FJR7\|A0A2P5FJR7_9ROSA	1.5e-14	75.86	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061140 PE=4 S...	[more]
tr\|A0A2N9H8X0\|A0A2N9H8X0_FAGSY	1.1e-12	74.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36003 PE=4 SV=1	[more]
tr\|A0A2P5CT62\|A0A2P5CT62_PARAD	1.9e-12	68.97	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_126780 PE...	[more]
tr\|W9SZJ5\|W9SZJ5_9ROSA	2.5e-12	68.97	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019129 PE=4 SV=1	[more]

BLAST of Cla97C02G050650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G050650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55365.1	7.5e-07	46.67	unknown protein	[more]
AT5G56520.1	1.4e-05	43.33	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G050650.1	Cla97C02G050650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104:SF2	SUBFAMILY NOT NAMED	coord: 1..74
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 1..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G050650	Cla003126	Watermelon (97103) v1	wmwmbB316
Cla97C02G050650	Csa4G268060	Cucumber (Chinese Long) v2	cuwmbB287
Cla97C02G050650	MELO3C014726	Melon (DHL92) v3.5.1	mewmbB377
Cla97C02G050650	ClCG02G024390	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G050650	CSPI04G12530	Wild cucumber (PI 183967)	cpiwmbB294
Cla97C02G050650	Cucsa.152720	Cucumber (Gy14) v1	cgywmbB259
Cla97C02G050650	Lsi10G009200	Bottle gourd (USVL1VR-Ls)	lsiwmbB052
Cla97C02G050650	Carg13975	Silver-seed gourd	carwmbB0531
Cla97C02G050650	Bhi10G000400	Wax gourd	wgowmbB353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G050650	Cucumber (Gy14) v2	cgybwmbB272
Cla97C02G050650	Cucurbita maxima (Rimu)	cmawmbB577
Cla97C02G050650	Cucurbita maxima (Rimu)	cmawmbB629
Cla97C02G050650	Cucurbita moschata (Rifu)	cmowmbB557
Cla97C02G050650	Cucurbita moschata (Rifu)	cmowmbB602
Cla97C02G050650	Cucumber (Chinese Long) v3	cucwmbB290
Cla97C02G050650	Melon (DHL92) v3.6.1	medwmbB368