Carg13975-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACTTTCTTATGCGTTCCTCCACCGGGTTCCTTCTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACTTTCTTATGCGTTCCTCCACCGGGTTCCTTCTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACTTTCTTATGCGTTCCTCCACCGGGTTCCTTCTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVPPPGSFYYYYYSSDYDSSSE
BLAST of Carg13975-RA vs. NCBI nr
Match: XP_022958637.1 (uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958638.1 uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_022958640.1 uncharacterized protein LOC111459803 [Cucurbita moschata] >XP_023533512.1 uncharacterized protein LOC111795367 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 118.6 bits (296), Expect = 9.4e-24 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of Carg13975-RA vs. NCBI nr
Match: XP_022153861.1 (uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153863.1 uncharacterized protein LOC111021275 [Momordica charantia] >XP_022153864.1 uncharacterized protein LOC111021275 [Momordica charantia]) HSP 1 Score: 95.9 bits (237), Expect = 6.5e-17 Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Carg13975-RA vs. NCBI nr
Match: KGN54022.1 (hypothetical protein Csa_4G268060 [Cucumis sativus]) HSP 1 Score: 89.0 bits (219), Expect = 8.0e-15 Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0
BLAST of Carg13975-RA vs. NCBI nr
Match: PON98040.1 (hypothetical protein TorRG33x02_061140 [Trema orientalis]) HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14 Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0
BLAST of Carg13975-RA vs. NCBI nr
Match: XP_015878844.1 (uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878845.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878847.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878848.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878849.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878850.1 uncharacterized protein LOC107415082 [Ziziphus jujuba] >XP_015878851.1 uncharacterized protein LOC107415082 [Ziziphus jujuba]) HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13 Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 0
BLAST of Carg13975-RA vs. TAIR10
Match: AT1G55365.1 (unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07 Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Carg13975-RA vs. TAIR10
Match: AT5G56520.1 (unknown protein) HSP 1 Score: 48.1 bits (113), Expect = 2.8e-06 Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Carg13975-RA vs. TrEMBL
Match: tr|A0A0A0L0B8|A0A0A0L0B8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268060 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 5.3e-15 Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0
BLAST of Carg13975-RA vs. TrEMBL
Match: tr|A0A2P5FJR7|A0A2P5FJR7_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061140 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.4e-14 Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0
BLAST of Carg13975-RA vs. TrEMBL
Match: tr|W9SZJ5|W9SZJ5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019129 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 0
BLAST of Carg13975-RA vs. TrEMBL
Match: tr|A0A2N9H8X0|A0A2N9H8X0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36003 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13 Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0
BLAST of Carg13975-RA vs. TrEMBL
Match: tr|A0A2P4LQ17|A0A2P4LQ17_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_22871 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12 Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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