Cp4.1LG05g05660 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g05660
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 3389782 .. 3390021 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACCTTCTTATGCGTTCCTCCACCGGGTTCCTTTTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA

mRNA sequence

ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACCTTCTTATGCGTTCCTCCACCGGGTTCCTTTTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA

Coding sequence (CDS)

ATGGTATTTAACAGCTTAATCGTGTTATCGGTTGCTCATTTATCGGCCGATGCATCGCAATGCATTGCACGATCTCCCGATCGCCTCACCAGCCACCAACTTCTTTATGTTCTCTTCAGCTACCCTCTTCAACAGCTCTCTCGCCTCGCCCTCTCTATATGGACCTTCTTATGCGTTCCTCCACCGGGTTCCTTTTACTATTACTACTACTCCTCCGACTACGATTCCTCATCCGAATGA

Protein sequence

MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVPPPGSFYYYYYSSDYDSSSE
Homology
[Close]
BLAST of Cp4.1LG05g05660 vs. TrEMBL
Match: A0A0A0L0B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268060 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-25
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 4   NSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVPPPG 63
           N  IVLSVAHLSADASQ IAR PD LTSHQLLY+LF++PLQQLSRLALS+WT  CVPPPG
Sbjct: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119

Query: 64  SFYYYYYSSDYDSSS 79
           SFYYYYYSSD D SS
Sbjct: 120 SFYYYYYSSDSDLSS 134

[Close]
BLAST of Cp4.1LG05g05660 vs. TrEMBL
Match: W9SZJ5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019129 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-18
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVP 60
          MVFNSL+V+SVAH SADA QC+A  P+RL+SHQLL ++  +PLQQL RLAL IWTFLC+P
Sbjct: 1  MVFNSLMVMSVAHASADAWQCLACLPERLSSHQLLDLVLCFPLQQLGRLALCIWTFLCLP 60

Query: 61 PPGSFYYYYYSSDYDSSS 79
          PP +   Y YSSD   SS
Sbjct: 61 PPDTLNSYSYSSDDSDSS 78

[Close]
BLAST of Cp4.1LG05g05660 vs. TrEMBL
Match: M5W0H4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012539mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.8e-17
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 1   MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVP 60
           MVFNSL+V+SVAH S +  Q +A  P+RL+SHQLL ++F +PLQQL RLAL +WTFLCVP
Sbjct: 74  MVFNSLMVVSVAHTSTEMWQYLACLPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLCVP 133

Query: 61  PPGSFYYYYYSSDYDSSS 79
           PP S+Y Y Y SD D+SS
Sbjct: 134 PPDSYYSYSY-SDSDASS 150

[Close]
BLAST of Cp4.1LG05g05660 vs. TrEMBL
Match: B9GLC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04070g PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-15
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIA--RSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 60
          MVFNSLIVLSVAH+SAD  Q IA  R  DR++SHQLL ++  +PLQQL RLAL +WTFLC
Sbjct: 1  MVFNSLIVLSVAHVSADVWQQIACIRFQDRVSSHQLLDLVCCFPLQQLGRLALFVWTFLC 60

Query: 61 VPPPGSFY--YYYYSSDYD 76
          +PPP SF   Y YYS+  D
Sbjct: 61 LPPPDSFLSSYSYYSTSSD 79

[Close]
BLAST of Cp4.1LG05g05660 vs. TrEMBL
Match: A0A067KEB0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16243 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-14
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSP--DRLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 60
          MVFNSL+VLSVAH SAD  Q IAR    +R++SHQLL ++  +PLQQL   AL +WTFLC
Sbjct: 1  MVFNSLMVLSVAHKSADLWQEIARIQLQERVSSHQLLDLICCFPLQQLGSFALWLWTFLC 60

Query: 61 VPPPGSFYYYYYSSDYDSSSE 80
          +PPP SFY Y Y S+  SS E
Sbjct: 61 LPPPDSFYPYSYYSNSSSSDE 81

[Close]
BLAST of Cp4.1LG05g05660 vs. TAIR10
Match: AT1G55365.1 (AT1G55365.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 6.5e-11
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSPD--RLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 60
          MVFNS +V++VA +S D  Q I R P   R+ + QL  +   +P+ QLSR  L +WTF+C
Sbjct: 1  MVFNSAMVMAVAEVSTDTWQLIWRVPSSQRIDTEQLFDIAVCFPIHQLSRFVLCLWTFMC 60

Query: 61 VPPPGSFYYYYYSSDYDSSS 79
          +P   SFY Y Y +   SSS
Sbjct: 61 LPSSDSFYSYTYETLSASSS 80

[Close]
BLAST of Cp4.1LG05g05660 vs. TAIR10
Match: AT5G56520.1 (AT5G56520.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSP--DRLTSHQLLYVLFSYPLQQLSRLALSIWTFLC 60
          MVF    V+SVAH+SA+  Q +   P  DR++S ++L ++  +PLQQL R  L  W ++C
Sbjct: 1  MVFRGDTVVSVAHISAEIFQRLRWIPPSDRISSGEMLQLVCCFPLQQLGRFVLWFWNYIC 60

Query: 61 VPPPGSFYY 68
          VPPP   Y+
Sbjct: 61 VPPPEILYF 69

[Close]
BLAST of Cp4.1LG05g05660 vs. NCBI nr
Match: gi|659097940|ref|XP_008449890.1| (PREDICTED: uncharacterized protein LOC103491633 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 9.4e-28
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVP 60
          MVF+SLIVLSVAHLSAD SQ IAR PD LTSHQLLY+LF++PLQQLSRLALS+WTF CVP
Sbjct: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60

Query: 61 PPGSFYYYYYSSDYDSSS 79
          PPGSFYYYYYSSD D SS
Sbjct: 61 PPGSFYYYYYSSDSDLSS 78

[Close]
BLAST of Cp4.1LG05g05660 vs. NCBI nr
Match: gi|700198864|gb|KGN54022.1| (hypothetical protein Csa_4G268060 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 4   NSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVPPPG 63
           N  IVLSVAHLSADASQ IAR PD LTSHQLLY+LF++PLQQLSRLALS+WT  CVPPPG
Sbjct: 60  NHFIVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPG 119

Query: 64  SFYYYYYSSDYDSSS 79
           SFYYYYYSSD D SS
Sbjct: 120 SFYYYYYSSDSDLSS 134

[Close]
BLAST of Cp4.1LG05g05660 vs. NCBI nr
Match: gi|1009124014|ref|XP_015878844.1| (PREDICTED: uncharacterized protein LOC107415082 [Ziziphus jujuba])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVP 60
          MVFNS++VLSVAH+SADA QC+   PDRL+SHQLL ++  +PLQQL RLAL +WTFLC+P
Sbjct: 1  MVFNSMLVLSVAHVSADAWQCLTCIPDRLSSHQLLDLICCFPLQQLGRLALCLWTFLCLP 60

Query: 61 PPGSFYYYYYSSDYDSSS 79
          PP SFY Y Y+   DSS+
Sbjct: 61 PPDSFYSYAYTDSDDSST 78

[Close]
BLAST of Cp4.1LG05g05660 vs. NCBI nr
Match: gi|703160992|ref|XP_010112675.1| (hypothetical protein L484_019129 [Morus notabilis])

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-18
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVP 60
          MVFNSL+V+SVAH SADA QC+A  P+RL+SHQLL ++  +PLQQL RLAL IWTFLC+P
Sbjct: 1  MVFNSLMVMSVAHASADAWQCLACLPERLSSHQLLDLVLCFPLQQLGRLALCIWTFLCLP 60

Query: 61 PPGSFYYYYYSSDYDSSS 79
          PP +   Y YSSD   SS
Sbjct: 61 PPDTLNSYSYSSDDSDSS 78

[Close]
BLAST of Cp4.1LG05g05660 vs. NCBI nr
Match: gi|657951143|ref|XP_008351351.1| (PREDICTED: uncharacterized protein LOC103414759 [Malus domestica])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 1  MVFNSLIVLSVAHLSADASQCIARSPDRLTSHQLLYVLFSYPLQQLSRLALSIWTFLCVP 60
          MVFNS++V SVAHLSA+  Q +A  P+R++SHQLL ++F +PLQQL RLA  +WTFLCVP
Sbjct: 1  MVFNSVMVESVAHLSAEMWQYLACLPERMSSHQLLDLIFCFPLQQLGRLAFCLWTFLCVP 60

Query: 61 PPGSFYYYYYSSDYDSSS 79
          PP S YYYY SSD D SS
Sbjct: 61 PPDS-YYYYSSSDSDDSS 77

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g05660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g05660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0B8_CUCSA1.0e-2582.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268060 PE=4 SV=1[more]
W9SZJ5_9ROSA3.6e-1865.38Uncharacterized protein OS=Morus notabilis GN=L484_019129 PE=4 SV=1[more]
M5W0H4_PRUPE6.8e-1764.10Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012539mg PE=4 SV=1[more]
B9GLC9_POPTR3.7e-1564.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04070g PE=4 SV=1[more]
A0A067KEB0_JATCU2.4e-1460.49Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16243 PE=4 SV=1[more]
BLAST of Cp4.1LG05g05660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55365.16.5e-1145.00 unknown protein[more]
AT5G56520.12.7e-0943.48 unknown protein[more]
BLAST of Cp4.1LG05g05660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097940|ref|XP_008449890.1|9.4e-2884.62PREDICTED: uncharacterized protein LOC103491633 [Cucumis melo][more]
gi|700198864|gb|KGN54022.1|1.5e-2582.67hypothetical protein Csa_4G268060 [Cucumis sativus][more]
gi|1009124014|ref|XP_015878844.1|2.1e-1965.38PREDICTED: uncharacterized protein LOC107415082 [Ziziphus jujuba][more]
gi|703160992|ref|XP_010112675.1|5.2e-1865.38hypothetical protein L484_019129 [Morus notabilis][more]
gi|657951143|ref|XP_008351351.1|1.5e-1765.38PREDICTED: uncharacterized protein LOC103414759 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g05660.1Cp4.1LG05g05660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35104FAMILY NOT NAMEDcoord: 2..79
score: 1.7
NoneNo IPR availablePANTHERPTHR35104:SF1SUBFAMILY NOT NAMEDcoord: 2..79
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g05660Cucsa.152720Cucumber (Gy14) v1cgycpeB0410
Cp4.1LG05g05660Cla003126Watermelon (97103) v1cpewmB723
Cp4.1LG05g05660Csa4G268060Cucumber (Chinese Long) v2cpecuB728
Cp4.1LG05g05660MELO3C014726Melon (DHL92) v3.5.1cpemeB696
Cp4.1LG05g05660ClCG02G024390Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g05660CSPI04G12530Wild cucumber (PI 183967)cpecpiB730
Cp4.1LG05g05660Lsi10G009200Bottle gourd (USVL1VR-Ls)cpelsiB598
Cp4.1LG05g05660Bhi10G000400Wax gourdcpewgoB0944
Cp4.1LG05g05660Carg13975Silver-seed gourdcarcpeB0718
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g05660Cucumber (Gy14) v2cgybcpeB559
Cp4.1LG05g05660Melon (DHL92) v3.6.1cpemedB829
Cp4.1LG05g05660Cucumber (Chinese Long) v3cpecucB0906
Cp4.1LG05g05660Cucumber (Chinese Long) v3cpecucB0919
Cp4.1LG05g05660Cucurbita pepo (Zucchini)cpecpeB310
Cp4.1LG05g05660Cucurbita maxima (Rimu)cmacpeB586
Cp4.1LG05g05660Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g05660Cucurbita moschata (Rifu)cmocpeB535
Cp4.1LG05g05660Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g05660Wild cucumber (PI 183967)cpecpiB741
Cp4.1LG05g05660Cucumber (Chinese Long) v2cpecuB740