Carg12118 (gene) Silver-seed gourd

Overview
NameCarg12118
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAuxin-responsive protein
LocationCucurbita_argyrosperma_scaffold_054 : 63618 .. 64237 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCGTACGCTCACTTTCCTCTTTTACATTTCGGATTTTGGTTGATTTCTTGAGGCTGAATTTCTTTGGTTTACTTGACAGAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGTGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTCGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAA

mRNA sequence

ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGTGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTCGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAA

Coding sequence (CDS)

ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGTGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTCGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAA

Protein sequence

MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGKIVFLFLFRIVNSGWV
Homology
[Close]
BLAST of Carg12118 vs. NCBI nr
Match: XP_022934015.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRGRPAVNGG 120
           DHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRGRPAVNGG
Sbjct: 61  DHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFG 165
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFG
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFG 164

[Close]
BLAST of Carg12118 vs. NCBI nr
Match: XP_022970300.1 (auxin-responsive protein IAA29-like [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 118/166 (71.08%), Postives = 120/166 (72.29%), Query Frame = 0 

Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDL STIRKKRPLHVDPS AFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLTSTIRKKRPLHVDPSSAFRRTLPLLLWN 60

Query: 61  DHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRGRPAVNGG 120
           DHP XXXXXXXXXXXXXXXXXXXXXXXXXX            RSLMQKXX          
Sbjct: 61  DHPNXXXXXXXXXXXXXXXXXXXXXXXXXXLVGWPPLKKRKTRSLMQKXXXXXXXXXXXX 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGKI 167
                               GRKVDLSQYHCFD+LRATLMKMF K+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXGRKVDLSQYHCFDQLRATLMKMFDKM 166

[Close]
BLAST of Carg12118 vs. NCBI nr
Match: XP_023529300.1 (auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 2.4e-35
Identity = 127/165 (76.97%), Postives = 127/165 (76.97%), Query Frame = 0 

Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRGRPAVNG 120
           DHP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXRSLMQ XX         
Sbjct: 61  DHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPPLKKXXXRSLMQXXXXXXXXXXXX 120

Query: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFG 165
                                GRKVDLSQYHCFDELRATLMKMFG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXGRKVDLSQYHCFDELRATLMKMFG 165

[Close]
BLAST of Carg12118 vs. NCBI nr
Match: XP_022960765.1 (uncharacterized protein LOC111461467 isoform X2 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 5.8e-29
Identity = 88/177 (49.72%), Postives = 95/177 (53.67%), Query Frame = 0 

Query: 1   MELQLGLSLI---PAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQL L+L    P KPFDLN     H    CLD +S  RKKRPL +DPS AFRRTLPLL
Sbjct: 3   MELQLSLALFPTNPTKPFDLNTH---HRALPCLDFDSISRKKRPLDIDPSSAFRRTLPLL 62

Query: 61  LWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRG---- 120
           LWNDHP                                          +QK  GR     
Sbjct: 63  LWNDHPNNGDDDPKNPNSASSNHPDNPEEQEIELVGWPPLKKRRKTLFVQKRIGRAVAIR 122

Query: 121 RPAV-NGGG----LNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGK 166
           RPA+ N GG    LN N NSRYVKVKMEGVGIGRKVD+ Q+HC D LRATLM MF K
Sbjct: 123 RPAMENDGGVYRELNSN-NSRYVKVKMEGVGIGRKVDIRQHHCLDALRATLMNMFDK 175

[Close]
BLAST of Carg12118 vs. NCBI nr
Match: XP_023515749.1 (uncharacterized protein LOC111779818 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 111/177 (62.71%), Postives = 117/177 (66.10%), Query Frame = 0 

Query: 1   MELQLGLSLI---PAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQL L+L    P KPFDLN     H    C D +S  RKKRPL +DPS AFRRTLPLL
Sbjct: 3   MELQLSLALFPTNPTKPFDLNTH---HRALPCFDFDSISRKKRPLDIDPSSAFRRTLPLL 62

Query: 61  LWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXXGRG---- 120
           LWNDHP  XXXXXXXXXXXXXXXXXXXXXXXX                +QK  GR     
Sbjct: 63  LWNDHPNNXXXXXXXXXXXXXXXXXXXXXXXXELVGWPPLKKRRKTLFVQKRIGRAVAIR 122

Query: 121 RPAV-NGGG----LNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGK 166
           RPA  N GG    LN N NSRYVKVKMEGVGIGRKVD+ Q+HC D LRATLM MF K
Sbjct: 123 RPATENDGGVYRELNPN-NSRYVKVKMEGVGIGRKVDVRQHHCLDALRATLMNMFDK 175

[Close]
BLAST of Carg12118 vs. TAIR10
Match: AT4G28640.2 (indole-3-acetic acid inducible 11)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 127 NSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGK 166
           NS +VKV M+G+ IGRK+DL+ + C++ L  TL +MF K
Sbjct: 135 NSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLK 173

[Close]
BLAST of Carg12118 vs. TAIR10
Match: AT1G19220.1 (auxin response factor 19)

HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 117 VNGGGLNWNSNSR---YVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFG 165
           +NGGGL  N   R   Y KV+  G  +GR +D+++Y  +DELR  L +MFG
Sbjct: 944 MNGGGLWPNQTQRMRTYTKVQKRG-SVGRSIDVTRYSGYDELRHDLARMFG 993

[Close]
BLAST of Carg12118 vs. TAIR10
Match: AT1G04550.2 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 42.0 bits (97), Expect = 4.6e-04
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 130 YVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF 164
           +VKV M+GVGIGRKVD+  +  ++ L  TL +MF
Sbjct: 126 FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMF 159

[Close]
BLAST of Carg12118 vs. TAIR10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29)

HSP 1 Score: 41.6 bits (96), Expect = 6.1e-04
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 0 

Query: 128 SRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF 164
           S YVKVKM+GV I RKVD+  ++ ++ L  +L+ MF
Sbjct: 159 SMYVKVKMDGVAIARKVDIKLFNSYESLTNSLITMF 194

[Close]
BLAST of Carg12118 vs. TAIR10
Match: AT5G25890.1 (indole-3-acetic acid inducible 28)

HSP 1 Score: 41.6 bits (96), Expect = 6.1e-04
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 0 

Query: 130 YVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGK 166
           YVK+ MEGV IGRKV+LS Y+ + +L   + ++F K
Sbjct: 82  YVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSK 117

[Close]
BLAST of Carg12118 vs. Swiss-Prot
Match: sp|Q38829|IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 127 NSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGK 166
           NS +VKV M+G+ IGRK+DL+ + C++ L  TL +MF K
Sbjct: 135 NSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLK 173

[Close]
BLAST of Carg12118 vs. Swiss-Prot
Match: sp|Q6K846|IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 128 SRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF 164
           + YVKVK EG  IGRKVDL+ +  +DEL ATL +MF
Sbjct: 92  ANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMF 127

[Close]
BLAST of Carg12118 vs. TrEMBL
Match: tr|A0A0A0LWC5|A0A0A0LWC5_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.1e-23
Identity = 107/175 (61.14%), Postives = 120/175 (68.57%), Query Frame = 0 

Query: 1   MELQLGLSLIPA---KPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQLGL+LIP    KPFDLN     ++    L  +S   KKR  H+D    FR+TLPLL
Sbjct: 85  MELQLGLALIPTNPIKPFDLNTH---NNNPISLVFDSINHKKRSRHLDSPATFRQTLPLL 144

Query: 61  LWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSL-MQKXXGR---- 120
           LWNDHP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX        +SL M++  GR    
Sbjct: 145 LWNDHPNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPPLKKRRKSLFMKEGVGRRAVI 204

Query: 121 GRPAVNGGGLNWN----SNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF 164
            RPAV   G+ W     +NSRYVKVKMEGVGI RKVDL ++H FD LRATLMKMF
Sbjct: 205 RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMF 256

[Close]
BLAST of Carg12118 vs. TrEMBL
Match: tr|A0A1S3B8T8|A0A1S3B8T8_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.6e-20
Identity = 107/197 (54.31%), Postives = 121/197 (61.42%), Query Frame = 0 

Query: 1   MELQLGLSLIPA---KPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAF-RRTLPL 60
           MELQLGL+LIP    KPFDLN     ++    L  +S   KKR  H+D S  F R TLPL
Sbjct: 3   MELQLGLALIPTNPIKPFDLNTH---NNNPISLVFDSINHKKRSRHLDSSPTFPRTTLPL 62

Query: 61  LLWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRS--LMQKXXGR-- 120
           LLWNDHP XXXXXXXXXXXXXXXXXXXXXXXXXXX           R    M++  GR  
Sbjct: 63  LLWNDHPNXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVGWPPLKKRRKSLFMKEGVGRRA 122

Query: 121 --GRPAVNGGGLNWN----SNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGKI 180
              RPAV   G  W     +NSRYVKVKMEGVGI RKVDL ++H FD LRATLM MF + 
Sbjct: 123 VIRRPAVKNDGGFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMNMFDET 182

[Close]
BLAST of Carg12118 vs. TrEMBL
Match: tr|A0A2R3XZ44|A0A2R3XZ44_9ROSI (Auxin-responsive protein OS=Carya cathayensis OX=139927 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 61/187 (32.62%), Postives = 74/187 (39.57%), Query Frame = 0 

Query: 1   MELQLGLSL--IPAKPFDLN-----------NSLLLHDTASCLDLNSTIRKKRPLHVDPS 60
           MELQLGL+L   P+K FDLN           ++      +SC D+N      R    D +
Sbjct: 1   MELQLGLALPSNPSKGFDLNYFASEPKEIAVSNRSFTVASSCTDINDINDNNRKRSFDQT 60

Query: 61  L------AFRRTLPLLLWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                     RTLPLLLWN HP                                      
Sbjct: 61  FENETDSTVPRTLPLLLWNLHPNEEDDPKDLENHSLVTFNDKKDGDNGDGLVGWPPIRSR 120

Query: 121 XRSLMQKXXGRGRPAVNGG---GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRAT 166
            R+        G   +  G   G+   SNS YVKVKMEGV I RK+DL  +H F  L  T
Sbjct: 121 WRNKRLCHENNGAVGLENGFACGIR-GSNSTYVKVKMEGVPIARKIDLGLHHSFQTLTET 180

[Close]
BLAST of Carg12118 vs. TrEMBL
Match: tr|A0A2P6RIQ2|A0A2P6RIQ2_ROSCH (Auxin-responsive protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0087791 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.6e-09
Identity = 62/175 (35.43%), Postives = 73/175 (41.71%), Query Frame = 0 

Query: 1   MELQLGLSL-----IPAK-PFDLN-NSLLLHDTASCLDLNSTIRKKRPLHVDPS---LAF 60
           MELQLGL+L      P K   DLN N  L H T S    N   ++      +PS    A 
Sbjct: 1   MELQLGLALPTNNNFPVKGGLDLNINDFLCHPTISDGSSNKNKKRSFTQAFEPSNATAAV 60

Query: 61  RRTLPLLLWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLMQKXX 120
            RTLP LLWN+ P                                         +     
Sbjct: 61  PRTLPWLLWNNQPNDDDEDDTKHSSRYTIMIKNEEDGLVGWPPIKSWKKETCFHIHGDGG 120

Query: 121 GRGRPAVNGGGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGK 166
           GR    V   G+N   NS +VKVKMEGVGI RK+DLSQ+  F  L+ TLM MF K
Sbjct: 121 GRRHRTV---GIN-GGNSTFVKVKMEGVGIARKIDLSQHQNFQTLQRTLMHMFDK 171

[Close]
BLAST of Carg12118 vs. TrEMBL
Match: tr|A0A2I4F525|A0A2I4F525_9ROSI (Auxin-responsive protein OS=Juglans regia OX=51240 GN=LOC108995605 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 58/184 (31.52%), Postives = 73/184 (39.67%), Query Frame = 0 

Query: 1   MELQLGLSL--IPAKPFDLN-----------NSLLLHDTASCLDLNSTIRKK---RPLHV 60
           MELQLGL+L   P+K FDLN           ++   +  +SC D+N   +K+   +    
Sbjct: 1   MELQLGLALPSNPSKGFDLNYFASEPKEIAISNRSFNVASSCTDINDNNKKRSFDQTFEN 60

Query: 61  DPSLAFRRTLPLLLWNDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRS 120
                  RTLPLLLWN HP                                         
Sbjct: 61  ATDSTVPRTLPLLLWNLHPNEEDDPKDLENHSLVTFNNKKDGDNGDGLVGWPPIRSRWTR 120

Query: 121 LMQKXXGRGRPAVNGGGLNW---NSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMK 166
             +      R      G       S+S YVKVKMEGV I RK+DLS +H F  L  TLM 
Sbjct: 121 NKRLCHENNRAVGLENGFACGIRGSSSTYVKVKMEGVPIARKIDLSLHHSFQTLTETLMD 180

The following BLAST results are available for this feature:
BLAST of Carg12118 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934015.11.1e-59100.00auxin-responsive protein IAA29-like [Cucurbita moschata][more]
XP_022970300.11.4e-3571.08auxin-responsive protein IAA29-like [Cucurbita maxima][more]
XP_023529300.12.4e-3576.97auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo][more]
XP_022960765.15.8e-2949.72uncharacterized protein LOC111461467 isoform X2 [Cucurbita moschata][more]
XP_023515749.13.8e-2862.71uncharacterized protein LOC111779818 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg12118 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28640.21.4e-0551.28indole-3-acetic acid inducible 11[more]
AT1G19220.12.7e-0445.10auxin response factor 19[more]
AT1G04550.24.6e-0452.94AUX/IAA transcriptional regulator family protein[more]
AT4G32280.16.1e-0450.00indole-3-acetic acid inducible 29[more]
AT5G25890.16.1e-0450.00indole-3-acetic acid inducible 28[more]
BLAST of Carg12118 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q38829|IAA11_ARATH2.6e-0451.28Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=... [more]
sp|Q6K846|IAA9_ORYSJ2.6e-0461.11Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 P... [more]
BLAST of Carg12118 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWC5|A0A0A0LWC5_CUCSA4.1e-2361.14Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1[more]
tr|A0A1S3B8T8|A0A1S3B8T8_CUCME5.6e-2054.31Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1[more]
tr|A0A2R3XZ44|A0A2R3XZ44_9ROSI4.4e-0932.62Auxin-responsive protein OS=Carya cathayensis OX=139927 PE=2 SV=1[more]
tr|A0A2P6RIQ2|A0A2P6RIQ2_ROSCH7.6e-0935.43Auxin-responsive protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0087791 PE=... [more]
tr|A0A2I4F525|A0A2I4F525_9ROSI1.1e-0731.52Auxin-responsive protein OS=Juglans regia OX=51240 GN=LOC108995605 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
IPR003311AUX_IAA
IPR033389AUX/IAA_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12118-RACarg12118-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033389AUX/IAA domainPFAMPF02309AUX_IAAcoord: 69..166
e-value: 2.5E-17
score: 63.5
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 123..174
e-value: 3.5E-11
score: 44.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..89
NoneNo IPR availablePANTHERPTHR31734:SF44AUXIN-RESPONSIVE PROTEIN IAA29coord: 1..165
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 1..165
IPR000270PB1 domainPROSITEPS51745PB1coord: 128..180
score: 13.013

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12118Cla012214Watermelon (97103) v1carwmB0042
Carg12118Cla020976Watermelon (97103) v1carwmB0037
Carg12118Csa1G231530Cucumber (Chinese Long) v2carcuB0035
Carg12118MELO3C010317Melon (DHL92) v3.5.1carmeB0035
Carg12118ClCG06G011420Watermelon (Charleston Gray)carwcgB0043
Carg12118CSPI01G16780Wild cucumber (PI 183967)carcpiB0037
Carg12118Cucsa.036190Cucumber (Gy14) v1carcgyB0038
Carg12118CmaCh10G005340Cucurbita maxima (Rimu)carcmaB0044
Carg12118CmaCh11G005320Cucurbita maxima (Rimu)carcmaB0047
Carg12118CmoCh11G005280Cucurbita moschata (Rifu)carcmoB0050
Carg12118CmoCh10G005700Cucurbita moschata (Rifu)carcmoB0047
Carg12118Lsi06G009920Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12118Cp4.1LG18g05170Cucurbita pepo (Zucchini)carcpeB0053
Carg12118Cp4.1LG04g09290Cucurbita pepo (Zucchini)carcpeB0054
Carg12118MELO3C010317.2Melon (DHL92) v3.6.1carmedB0036
Carg12118CsaV3_1G026650Cucumber (Chinese Long) v3carcucB0042
Carg12118Cla97C06G120580Watermelon (97103) v2carwmbB0037
Carg12118Bhi09G001925Wax gourdcarwgoB0042
Carg12118Bhi02G000800Wax gourdcarwgoB0043
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12118Carg09932Silver-seed gourdcarcarB041
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12118Cucumber (Gy14) v2carcgybB0041
Carg12118Cucumber (Gy14) v1carcgyB0041
Carg12118Cucurbita maxima (Rimu)carcmaB0048
Carg12118Cucurbita moschata (Rifu)carcmoB0051
Carg12118Wild cucumber (PI 183967)carcpiB0044
Carg12118Cucumber (Chinese Long) v2carcuB0042
Carg12118Cucumber (Chinese Long) v3carcucB0045
Carg12118Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12118Watermelon (Charleston Gray)carwcgB0037
Carg12118Watermelon (Charleston Gray)carwcgB0039
Carg12118Watermelon (97103) v1carwmB0038
Carg12118Watermelon (97103) v2carwmbB0031
Carg12118Watermelon (97103) v2carwmbB0033
Carg12118Wax gourdcarwgoB0037