Carg12118-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCGTACGCTCACTTTCCTCTTTTACATTTCGGATTTTGGTTGATTTCTTGAGGCTGAATTTCTTTGGTTTACTTGACAGAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGTGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTCGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAA ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGTGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTCGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAA ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGTGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTGAGCCAATACCATTGTTTTGACGAACTTCGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAA MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGKIVFLFLFRIVNSGWV
BLAST of Carg12118-RA vs. NCBI nr
Match: XP_022934015.1 (auxin-responsive protein IAA29-like [Cucurbita moschata]) HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Carg12118-RA vs. NCBI nr
Match: XP_022970300.1 (auxin-responsive protein IAA29-like [Cucurbita maxima]) HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35 Identity = 118/166 (71.08%), Postives = 120/166 (72.29%), Query Frame = 0
BLAST of Carg12118-RA vs. NCBI nr
Match: XP_023529300.1 (auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 158.3 bits (399), Expect = 2.4e-35 Identity = 127/165 (76.97%), Postives = 127/165 (76.97%), Query Frame = 0
BLAST of Carg12118-RA vs. NCBI nr
Match: XP_022960765.1 (uncharacterized protein LOC111461467 isoform X2 [Cucurbita moschata]) HSP 1 Score: 137.1 bits (344), Expect = 5.8e-29 Identity = 88/177 (49.72%), Postives = 95/177 (53.67%), Query Frame = 0
BLAST of Carg12118-RA vs. NCBI nr
Match: XP_023515749.1 (uncharacterized protein LOC111779818 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28 Identity = 111/177 (62.71%), Postives = 117/177 (66.10%), Query Frame = 0
BLAST of Carg12118-RA vs. TAIR10
Match: AT4G28640.2 (indole-3-acetic acid inducible 11) HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05 Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 0
BLAST of Carg12118-RA vs. TAIR10
Match: AT1G19220.1 (auxin response factor 19) HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0
BLAST of Carg12118-RA vs. TAIR10
Match: AT1G04550.2 (AUX/IAA transcriptional regulator family protein) HSP 1 Score: 42.0 bits (97), Expect = 4.6e-04 Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 0
BLAST of Carg12118-RA vs. TAIR10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29) HSP 1 Score: 41.6 bits (96), Expect = 6.1e-04 Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 0
BLAST of Carg12118-RA vs. TAIR10
Match: AT5G25890.1 (indole-3-acetic acid inducible 28) HSP 1 Score: 41.6 bits (96), Expect = 6.1e-04 Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 0
BLAST of Carg12118-RA vs. Swiss-Prot
Match: sp|Q38829|IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04 Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 0
BLAST of Carg12118-RA vs. Swiss-Prot
Match: sp|Q6K846|IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 PE=2 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04 Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0
BLAST of Carg12118-RA vs. TrEMBL
Match: tr|A0A0A0LWC5|A0A0A0LWC5_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 4.1e-23 Identity = 107/175 (61.14%), Postives = 120/175 (68.57%), Query Frame = 0
BLAST of Carg12118-RA vs. TrEMBL
Match: tr|A0A1S3B8T8|A0A1S3B8T8_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 5.6e-20 Identity = 107/197 (54.31%), Postives = 121/197 (61.42%), Query Frame = 0
BLAST of Carg12118-RA vs. TrEMBL
Match: tr|A0A2R3XZ44|A0A2R3XZ44_9ROSI (Auxin-responsive protein OS=Carya cathayensis OX=139927 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09 Identity = 61/187 (32.62%), Postives = 74/187 (39.57%), Query Frame = 0
BLAST of Carg12118-RA vs. TrEMBL
Match: tr|A0A2P6RIQ2|A0A2P6RIQ2_ROSCH (Auxin-responsive protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0087791 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 7.6e-09 Identity = 62/175 (35.43%), Postives = 73/175 (41.71%), Query Frame = 0
BLAST of Carg12118-RA vs. TrEMBL
Match: tr|A0A2I4F525|A0A2I4F525_9ROSI (Auxin-responsive protein OS=Juglans regia OX=51240 GN=LOC108995605 PE=3 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07 Identity = 58/184 (31.52%), Postives = 73/184 (39.67%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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