Carg09959 (gene) Silver-seed gourd

NameCarg09959
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSerine-rich protein-related
LocationCucurbita_argyrosperma_scaffold_030 : 707259 .. 707597 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

Protein sequence

MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
BLAST of Carg09959 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 6.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

BLAST of Carg09959 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 4.0e-52
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           KLTMLAKANALRSFL QIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

BLAST of Carg09959 vs. NCBI nr
Match: XP_023003805.1 (uncharacterized protein LOC111497277 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S+N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI+AIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

BLAST of Carg09959 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 5.4e-41
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

BLAST of Carg09959 vs. NCBI nr
Match: XP_023530962.1 (uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVYAKANAVRAFLLHIIRPSSNDLQRRRNFHPSPSRFCLMNKHGTGLAVS 112

BLAST of Carg09959 vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 18  SRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------ 77
           SR+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L      
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGV 179

Query: 78  -----RSFLQQIINPSSKDLQRRRNFRPKPSRFCLM 103
                R  L  +I PSS  L+RR  ++P+PSR  +M
Sbjct: 180 EGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

BLAST of Carg09959 vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related)

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------- 78
           R+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RSFLQQIINPSSKDLQRRRNFRPKPSRFCLMN 104
               R  L  +I PSS  L+RR  + P+ SR   M+
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

BLAST of Carg09959 vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 0

Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSI---------AAITTAQLKLTMLAKAN 78
           RKCLCSPTTHPGSFRCS HR      +++ +SS                 L L  LA  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  AL------------RSFLQQIINPSSKDLQRRRNFRPKPSRF 100
           +L            RS    +  PSS    RR  FRP+ SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

BLAST of Carg09959 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 0

Query: 2  ASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRN 40
          A + GS     Q+      CLCSPTTHPGSFRC IHR+
Sbjct: 25 AVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

BLAST of Carg09959 vs. TAIR10
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.8e-04
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 0

Query: 21 CLCSPTTHPGSFRCSIHR 39
          C+CSPTTHPGSF+C +HR
Sbjct: 32 CICSPTTHPGSFKCKLHR 49

BLAST of Carg09959 vs. TrEMBL
Match: tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.8e-32
Identity = 78/112 (69.64%), Postives = 87/112 (77.68%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSS  K  S  GSRKCLCSPTTHPGSFRCS HR R K+S+  SSSS      A+L
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS------AEL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +   LAKANALR+FL Q+I PSS D+QRRRNF P+PSRFCLMN+HGTGL VS
Sbjct: 61  E---LAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

BLAST of Carg09959 vs. TrEMBL
Match: tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60
           MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+          ITTA 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60

Query: 61  LKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           L+   LAKANALRSFL Q+I PSS DLQRRRNF P+PSRFCLMN+H TGLAVS
Sbjct: 61  LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of Carg09959 vs. TrEMBL
Match: tr|B9SZN1|B9SZN1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.7e-25
Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASK+ SSN K  +   +R CLCSPTTHPGSFRCS+HRN  + S RS +   A ++  + 
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRT---AHVSPRKW 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +L+++AKAN+L++FL QII PSS DLQRRRNF+P+P+RFCLMN +  G+AVS
Sbjct: 61  ELSVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of Carg09959 vs. TrEMBL
Match: tr|I3NMS2|I3NMS2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 69/114 (60.53%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 1   MASKSGSSNPK--LQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTA 60
           MASK   S+ K   Q     R CLCSPT HPGSFRCS+HRN R+V  RSSSS+       
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSN------- 60

Query: 61  QLKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           + +L ++AKAN+LR+FL QII PSS DLQRRRNFRP+PSRFCLMN +  G AVS
Sbjct: 61  KGELAVIAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of Carg09959 vs. TrEMBL
Match: tr|A0A2P5DX22|A0A2P5DX22_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 0

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+K+ +S+ K   +G  R CLCSPTTHPGSFRCS+HRN  K      S++   +T+   
Sbjct: 1   MATKNTASSQKRHVVG--RTCLCSPTTHPGSFRCSLHRNPHK----PRSATTVRVTSGPW 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGT-GLAVS 113
           +  M+AKAN++++FL QII PSS DL RRRNF+P+PSRFCLMNN+ T G+AVS
Sbjct: 61  EAAMVAKANSIKAFLLQIIKPSSHDLHRRRNFKPRPSRFCLMNNNNTDGVAVS 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022921799.16.1e-53100.00uncharacterized protein LOC111429944 [Cucurbita moschata][more]
XP_023515429.14.0e-5299.11uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo][more]
XP_023003805.13.2e-4180.36uncharacterized protein LOC111497277 [Cucurbita maxima][more]
XP_022927032.15.4e-4180.36uncharacterized protein LOC111433980 [Cucurbita moschata][more]
XP_023530962.11.2e-4080.36uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G11090.11.1e-1141.67serine-rich protein-related[more]
AT5G25280.14.6e-1039.58serine-rich protein-related[more]
AT5G20370.11.5e-0839.22serine-rich protein-related[more]
AT1G67910.11.3e-0455.26unknown protein[more]
AT1G24577.13.8e-0477.78unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME8.8e-3269.64uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=... [more]
tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA2.6e-3169.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1[more]
tr|B9SZN1|B9SZN1_RICCO2.7e-2558.04Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1[more]
tr|I3NMS2|I3NMS2_HEVBR2.3e-2460.53Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1[more]
tr|A0A2P5DX22|A0A2P5DX22_9ROSA3.4e-2355.75Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 S... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09959-RACarg09959-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR33132:SF28SERINE-RICH PROTEIN-LIKE PROTEINcoord: 2..111
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 2..111

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09959Carg27189Silver-seed gourdcarcarB153