CSPI01G17140 (gene) Wild cucumber (PI 183967)

NameCSPI01G17140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSerine-rich protein-related
LocationChr1 : 12901422 .. 12902184 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCCACAAGTTTTCCCTAAAAATCAGTCCACAAATAATAATCACTCCCACATTTTCAAATTCAATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGAATTCCCCCTTTTTTTTAGTTGCTTAATCAGTCGTTTGTACGTGTAGTAGATCTGGATGTCTGTTTTTGTTCCTGATTTCGATCTTCTTCCTTCGCTGAATTTCCAGATGAGTTTGTAGATATAGTACTCTGTTTGTGTACAGATTATTTCGAGACGACATTGGATCTTGACGATTCTACAAGTCTTTCTTGAAATATAATTAGTGTTTTTTTTCTTTCTCTCTTTCATTTCTTTTGCATCTTTTCCTCTGTTTCTTCTTCTCTGATTCTTGCAACTGGCAAATGCAAGCGAAGTCGTAATAAACGGATGATGATTCATTACATCTTGAAATGTTTTCTTGATTTCTTTATCAAGAACTTCCACAAA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGA
BLAST of CSPI01G17140 vs. TrEMBL
Match: A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
           MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
           LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS
Sbjct: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of CSPI01G17140 vs. TrEMBL
Match: B9SZN1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-25
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
           MASK+ SS  K  T+  +R CLCSPTTHPGSFRCS HRN ++ S+ RS ++ +S      
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSN-RSRTAHVSPRKWEL 60

Query: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
             +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRP+RFCLMN +  G+AVS
Sbjct: 61  SVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of CSPI01G17140 vs. TrEMBL
Match: I3NMS2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGAS--RKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITT 60
           MASK   S  K     ++  R CLCSPT HPGSFRCS HRN  ++    SSS+   L   
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSNKGELAV- 60

Query: 61  ADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
               +AKAN+LR+FLLQ+IKPSS+DLQRRRNF PRPSRFCLMN +  G AVS
Sbjct: 61  ----IAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of CSPI01G17140 vs. TrEMBL
Match: F6HCI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00580 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-21
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1

Query: 17  ASRKCLCSPTTHPGSFRCSFHRNRHKISSS---RSSSSSLSLITTADLELAKANALRSFL 76
           A+R CLCSPTTHPGSFRCS HRN  ++ S    R SS    L       +AKAN++++FL
Sbjct: 13  ATRPCLCSPTTHPGSFRCSLHRNFDRVPSGALVRPSSRQWQLEV-----MAKANSVKAFL 72

Query: 77  LQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
           LQ+IKPSS+DLQRRRNF P+P+RFCLMN +  G+AVS
Sbjct: 73  LQIIKPSSHDLQRRRNFKPKPTRFCLMNGNRDGVAVS 104

BLAST of CSPI01G17140 vs. TrEMBL
Match: A0A061GP27_THECC (Serine-rich protein-related OS=Theobroma cacao GN=TCM_038231 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-20
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1

Query: 1   MASKSGSSTH-KFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTA 60
           MASK+ SS+  K PT   SR CLCSPTTHPGSFRC+ HRN +K    R+    +S     
Sbjct: 1   MASKNASSSSSKSPT---SRTCLCSPTTHPGSFRCNLHRNFNK-PPGRTRVVRVSPNHWE 60

Query: 61  DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
              +AKAN++++ LLQ+IKPSS+D+QRRRNF P+PSRFCL+N +  G  V+
Sbjct: 61  LAVIAKANSIKAILLQIIKPSSHDMQRRRNFQPKPSRFCLLNGNRNGFGVA 107

BLAST of CSPI01G17140 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 1

Query: 18  SRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSSSSSLSLITTA------DLELAKANA 77
           SR+C+CSPTTHPGSFRCS H+   N H   ++  +++ L++  +A       +   +   
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEW 179

Query: 78  LRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLM 101
           +R  L  +I+PSS+ L+RR  + PRPSR  +M
Sbjct: 180 VRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

BLAST of CSPI01G17140 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-10
Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSSSSSLSLIT 60
           ++S   S+ HK P +   R+C+CSPTTHPGSFRCS H+   N H   ++  +++ L++  
Sbjct: 108 VSSNKPSNHHKIPDS--RRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRR 167

Query: 61  TA------DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMN 102
           +A       +   +   +R  L  +I+PSS+ L+RR  + PR SR   M+
Sbjct: 168 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

BLAST of CSPI01G17140 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-09
Identity = 45/114 (39.47%), Postives = 52/114 (45.61%), Query Frame = 1

Query: 7   SSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD------ 66
           SS H+       RKCLCSPTTHPGSFRCSFHR      S   +SS++      D      
Sbjct: 62  SSNHQ-----TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVN 121

Query: 67  -----LELAKANAL------------RSFLLQMIKPSSNDLQRRRNFHPRPSRF 98
                 +LA  N+L            RS    + KPSS    RR  F PR SRF
Sbjct: 122 VGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

BLAST of CSPI01G17140 vs. NCBI nr
Match: gi|778660170|ref|XP_011655735.1| (PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
           MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
           LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS
Sbjct: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of CSPI01G17140 vs. NCBI nr
Match: gi|659086407|ref|XP_008443918.1| (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 6.5e-43
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
           MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
           LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSRFCLMNDH TGL VS
Sbjct: 61  LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

BLAST of CSPI01G17140 vs. NCBI nr
Match: gi|1000942539|ref|XP_015582253.1| (PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis])

HSP 1 Score: 122.5 bits (306), Expect = 4.7e-25
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60
           MASK+ SS  K  T+  +R CLCSPTTHPGSFRCS HRN ++ S+ RS ++ +S      
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSN-RSRTAHVSPRKWEL 60

Query: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
             +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRP+RFCLMN +  G+AVS
Sbjct: 61  SVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of CSPI01G17140 vs. NCBI nr
Match: gi|313586597|gb|ADR71309.1| (hypothetical protein 31 [Hevea brasiliensis])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGAS--RKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITT 60
           MASK   S  K     ++  R CLCSPT HPGSFRCS HRN  ++    SSS+   L   
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSNKGELAV- 60

Query: 61  ADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
               +AKAN+LR+FLLQ+IKPSS+DLQRRRNF PRPSRFCLMN +  G AVS
Sbjct: 61  ----IAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of CSPI01G17140 vs. NCBI nr
Match: gi|720089768|ref|XP_010244874.1| (PREDICTED: uncharacterized protein LOC104588580 [Nelumbo nucifera])

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-20
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITT-- 60
           MAS++ SS  K P N A R CLCSPT HPGSFRCS HRN  K+ + RSS   +S  TT  
Sbjct: 1   MASRNVSSNSK-PQNPAIRTCLCSPTNHPGSFRCSLHRNSRKLYT-RSSVHVVSNSTTNR 60

Query: 61  ADLELA-KANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 111
           +D  +  K N L+ FL+Q+IKPS +DL+RR NF P+P+RFCLMN ++ G+ VS
Sbjct: 61  SDWRMVDKPNLLKEFLMQIIKPSKHDLRRRSNFQPKPTRFCLMNSNSGGVTVS 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYY6_CUCSA7.5e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264520 PE=4 SV=1[more]
B9SZN1_RICCO3.3e-2560.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1[more]
I3NMS2_HEVBR1.5e-2258.04Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1[more]
F6HCI2_VITVI2.2e-2159.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00580 PE=4 SV=... [more]
A0A061GP27_THECC9.3e-2054.05Serine-rich protein-related OS=Theobroma cacao GN=TCM_038231 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11090.12.0e-1039.13 serine-rich protein-related[more]
AT5G25280.17.8e-1035.45 serine-rich protein-related[more]
AT5G20370.13.9e-0939.47 serine-rich protein-related[more]
Match NameE-valueIdentityDescription
gi|778660170|ref|XP_011655735.1|1.1e-53100.00PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus][more]
gi|659086407|ref|XP_008443918.1|6.5e-4383.64PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo][more]
gi|1000942539|ref|XP_015582253.1|4.7e-2560.00PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis][more]
gi|313586597|gb|ADR71309.1|2.2e-2258.04hypothetical protein 31 [Hevea brasiliensis][more]
gi|720089768|ref|XP_010244874.1|3.5e-2054.87PREDICTED: uncharacterized protein LOC104588580 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009506 plasmodesma
cellular_component GO:0019031 viral envelope
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17140.1CSPI01G17140.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 17..110
score: 3.4
NoneNo IPR availablePANTHERPTHR33132:SF5SUBFAMILY NOT NAMEDcoord: 17..110
score: 3.4

The following gene(s) are paralogous to this gene:

None