Cucsa.350580 (gene) Cucumber (Gy14) v1

NameCucsa.350580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionSerine-rich protein-related
Locationscaffold03504 : 68835 .. 69204 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCACAAATAATAATCACTCCCACATTTTCAAATTCAATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGA

mRNA sequence

TCCACAAATAATAATCACTCCCACATTTTCAAATTCAATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGA

Coding sequence (CDS)

TCCACAAATAATAATCACTCCCACATTTTCAAATTCAATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGA

Protein sequence

PQIIITPTFSNSMASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS*
BLAST of Cucsa.350580 vs. TrEMBL
Match: A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.9e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 72
           MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 73  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
           LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS
Sbjct: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of Cucsa.350580 vs. TrEMBL
Match: B9SZN1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.1e-27
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 72
           MASK+ SS  K  T+  +R CLCSPTTHPGSFRCS HRN ++ S+ RS ++ +S      
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSN-RSRTAHVSPRKWEL 60

Query: 73  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
             +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRP+RFCLMN +  G+AVS
Sbjct: 61  SVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of Cucsa.350580 vs. TrEMBL
Match: I3NMS2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-24
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGAS--RKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITT 72
           MASK   S  K     ++  R CLCSPT HPGSFRCS HRN  ++    SSS+   L   
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSNKGELAV- 60

Query: 73  ADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
               +AKAN+LR+FLLQ+IKPSS+DLQRRRNF PRPSRFCLMN +  G AVS
Sbjct: 61  ----IAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of Cucsa.350580 vs. TrEMBL
Match: F6HCI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00580 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.9e-23
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1

Query: 29  ASRKCLCSPTTHPGSFRCSFHRNRHKISSS---RSSSSSLSLITTADLELAKANALRSFL 88
           A+R CLCSPTTHPGSFRCS HRN  ++ S    R SS    L       +AKAN++++FL
Sbjct: 13  ATRPCLCSPTTHPGSFRCSLHRNFDRVPSGALVRPSSRQWQLEV-----MAKANSVKAFL 72

Query: 89  LQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
           LQ+IKPSS+DLQRRRNF P+P+RFCLMN +  G+AVS
Sbjct: 73  LQIIKPSSHDLQRRRNFKPKPTRFCLMNGNRDGVAVS 104

BLAST of Cucsa.350580 vs. TrEMBL
Match: A0A061GP27_THECC (Serine-rich protein-related OS=Theobroma cacao GN=TCM_038231 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 1

Query: 13  MASKSGSSTH-KFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTA 72
           MASK+ SS+  K PT   SR CLCSPTTHPGSFRC+ HRN +K    R+    +S     
Sbjct: 1   MASKNASSSSSKSPT---SRTCLCSPTTHPGSFRCNLHRNFNK-PPGRTRVVRVSPNHWE 60

Query: 73  DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
              +AKAN++++ LLQ+IKPSS+D+QRRRNF P+PSRFCL+N +  G  V+
Sbjct: 61  LAVIAKANSIKAILLQIIKPSSHDMQRRRNFQPKPSRFCLLNGNRNGFGVA 107

BLAST of Cucsa.350580 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 5   ITPTFSNSMASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSS 64
           I+PT  +   SK+   +H    +  SR+C+CSPTTHPGSFRCS H+   N H   ++  +
Sbjct: 98  ISPTNKSISVSKNQPPSHN---HKISRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYT 157

Query: 65  SSSLSLITTA------DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLM 113
           ++ L++  +A       +   +   +R  L  +I+PSS+ L+RR  + PRPSR  +M
Sbjct: 158 TNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

BLAST of Cucsa.350580 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-13
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 1

Query: 5   ITPTFSNSMASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHR---NRHKISSSRSS 64
           I+P  S +++S   S+ HK P +   R+C+CSPTTHPGSFRCS H+   N H   ++  +
Sbjct: 100 ISPNRSIAVSSNKPSNHHKIPDS--RRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYT 159

Query: 65  SSSLSLITTA------DLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMN 114
           ++ L++  +A       +   +   +R  L  +I+PSS+ L+RR  + PR SR   M+
Sbjct: 160 TNGLNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

BLAST of Cucsa.350580 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 45/114 (39.47%), Postives = 52/114 (45.61%), Query Frame = 1

Query: 19  SSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD------ 78
           SS H+       RKCLCSPTTHPGSFRCSFHR      S   +SS++      D      
Sbjct: 62  SSNHQ-----TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVN 121

Query: 79  -----LELAKANAL------------RSFLLQMIKPSSNDLQRRRNFHPRPSRF 110
                 +LA  N+L            RS    + KPSS    RR  F PR SRF
Sbjct: 122 VGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

BLAST of Cucsa.350580 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1

Query: 18  GSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSS--SSLSLITTAD 73
           G S     ++   + CLC+PTTHPGSFRC +HR    +  SR +S  S+LS++   D
Sbjct: 50  GGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLAGGD 106

BLAST of Cucsa.350580 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1

Query: 28 GASRKCLCSPTTHPGSFRCSFHRNRHK-ISSSRSSSSSLSL 68
          G  +KC+CSP+ HP SF+C +H++ ++ + SS SSSSS SL
Sbjct: 45 GGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSSSSSL 85

BLAST of Cucsa.350580 vs. NCBI nr
Match: gi|778660170|ref|XP_011655735.1| (PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 72
           MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 73  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
           LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS
Sbjct: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of Cucsa.350580 vs. NCBI nr
Match: gi|659086407|ref|XP_008443918.1| (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 72
           MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60

Query: 73  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
           LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSRFCLMNDH TGL VS
Sbjct: 61  LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

BLAST of Cucsa.350580 vs. NCBI nr
Match: gi|1000942539|ref|XP_015582253.1| (PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis])

HSP 1 Score: 128.6 bits (322), Expect = 7.3e-27
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 72
           MASK+ SS  K  T+  +R CLCSPTTHPGSFRCS HRN ++ S+ RS ++ +S      
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSN-RSRTAHVSPRKWEL 60

Query: 73  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
             +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRP+RFCLMN +  G+AVS
Sbjct: 61  SVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of Cucsa.350580 vs. NCBI nr
Match: gi|313586597|gb|ADR71309.1| (hypothetical protein 31 [Hevea brasiliensis])

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGAS--RKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITT 72
           MASK   S  K     ++  R CLCSPT HPGSFRCS HRN  ++    SSS+   L   
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSNKGELAV- 60

Query: 73  ADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
               +AKAN+LR+FLLQ+IKPSS+DLQRRRNF PRPSRFCLMN +  G AVS
Sbjct: 61  ----IAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of Cucsa.350580 vs. NCBI nr
Match: gi|720089768|ref|XP_010244874.1| (PREDICTED: uncharacterized protein LOC104588580 [Nelumbo nucifera])

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-22
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1

Query: 13  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITT-- 72
           MAS++ SS  K P N A R CLCSPT HPGSFRCS HRN  K+ + RSS   +S  TT  
Sbjct: 1   MASRNVSSNSK-PQNPAIRTCLCSPTNHPGSFRCSLHRNSRKLYT-RSSVHVVSNSTTNR 60

Query: 73  ADLELA-KANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 123
           +D  +  K N L+ FL+Q+IKPS +DL+RR NF P+P+RFCLMN ++ G+ VS
Sbjct: 61  SDWRMVDKPNLLKEFLMQIIKPSKHDLRRRSNFQPKPTRFCLMNSNSGGVTVS 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LYY6_CUCSA8.9e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264520 PE=4 SV=1[more]
B9SZN1_RICCO5.1e-2760.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1[more]
I3NMS2_HEVBR1.8e-2458.04Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1[more]
F6HCI2_VITVI9.9e-2359.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00580 PE=4 SV=... [more]
A0A061GP27_THECC1.1e-2154.05Serine-rich protein-related OS=Theobroma cacao GN=TCM_038231 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11090.11.7e-1335.90 serine-rich protein-related[more]
AT5G25280.12.2e-1335.59 serine-rich protein-related[more]
AT5G20370.12.7e-1139.47 serine-rich protein-related[more]
AT3G13227.11.8e-0742.11 serine-rich protein-related[more]
AT1G52342.13.4e-0651.22 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778660170|ref|XP_011655735.1|1.3e-55100.00PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus][more]
gi|659086407|ref|XP_008443918.1|1.3e-4483.64PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo][more]
gi|1000942539|ref|XP_015582253.1|7.3e-2760.00PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis][more]
gi|313586597|gb|ADR71309.1|2.6e-2458.04hypothetical protein 31 [Hevea brasiliensis][more]
gi|720089768|ref|XP_010244874.1|4.1e-2254.87PREDICTED: uncharacterized protein LOC104588580 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.350580.1Cucsa.350580.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 29..122
score: 3.4
NoneNo IPR availablePANTHERPTHR33132:SF5SUBFAMILY NOT NAMEDcoord: 29..122
score: 3.4

The following gene(s) are paralogous to this gene:

None