Cp4.1LG18g05390 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG18g05390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSerine-rich protein-related
LocationCp4.1LG18 : 5978182 .. 5978520 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAAAATCTGGATCCTCCAATCCCAAATTGCAGAGCATCGGCGGTTCTCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGATCGTTTCTTCTGCAGATCATCAATCCTTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAATTGCAGAGCATCGGCGGTTCTCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGATCGTTTCTTCTGCAGATCATCAATCCTTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAATTGCAGAGCATCGGCGGTTCTCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGATCGTTTCTTCTGCAGATCATCAATCCTTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

Protein sequence

MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
BLAST of Cp4.1LG18g05390 vs. TrEMBL
Match: A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 86/113 (76.11%), Postives = 95/113 (84.07%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60
           MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+ RSSSSS++ ITTA 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           L+L   AKANALRSFLLQ+I PSS DLQRRRNF P+PSRFCLMN+H TGLAVS
Sbjct: 61  LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of Cp4.1LG18g05390 vs. TrEMBL
Match: B9SZN1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASK+ SSN K  +   +R CLCSPTTHPGSFRCS+HRN  + S RS +   A ++  + 
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRT---AHVSPRKW 60

Query: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +L+++AKAN+L++FLLQII PSS DLQRRRNF+P+P+RFCLMN +  G+AVS
Sbjct: 61  ELSVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of Cp4.1LG18g05390 vs. TrEMBL
Match: I3NMS2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-25
Identity = 70/114 (61.40%), Postives = 82/114 (71.93%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGS--RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTA 60
           MASK   S+ K Q    +  R CLCSPT HPGSFRCS+HRN R+V  RSSSS+       
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSNKG----- 60

Query: 61  QLKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
             +L ++AKAN+LR+FLLQII PSS DLQRRRNFRP+PSRFCLMN +  G AVS
Sbjct: 61  --ELAVIAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of Cp4.1LG18g05390 vs. TrEMBL
Match: F6HCI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00580 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.9e-23
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 1

Query: 7   SSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLA 66
           S  P  +    +R CLCSPTTHPGSFRCS+HRN  +V     S ++   ++ Q +L ++A
Sbjct: 3   SGPPNSKPHPATRPCLCSPTTHPGSFRCSLHRNFDRVP----SGALVRPSSRQWQLEVMA 62

Query: 67  KANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           KAN++++FLLQII PSS DLQRRRNF+PKP+RFCLMN +  G+AVS
Sbjct: 63  KANSVKAFLLQIIKPSSHDLQRRRNFKPKPTRFCLMNGNRDGVAVS 104

BLAST of Cp4.1LG18g05390 vs. TrEMBL
Match: A0A061GP27_THECC (Serine-rich protein-related OS=Theobroma cacao GN=TCM_038231 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.6e-22
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASK+ SS+        SR CLCSPTTHPGSFRC++HRN  K   R+    +  ++    
Sbjct: 1   MASKNASSSSSKSPT--SRTCLCSPTTHPGSFRCNLHRNFNKPPGRTR---VVRVSPNHW 60

Query: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +L ++AKAN++++ LLQII PSS D+QRRRNF+PKPSRFCL+N +  G  V+
Sbjct: 61  ELAVIAKANSIKAILLQIIKPSSHDMQRRRNFQPKPSRFCLLNGNRNGFGVA 107

BLAST of Cp4.1LG18g05390 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-12
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 1

Query: 18  SRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------ 77
           SR+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L      
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGV 179

Query: 78  -----RSFLLQIINPSSKDLQRRRNFRPKPSRFCLM 103
                R  L  +I PSS  L+RR  ++P+PSR  +M
Sbjct: 180 EGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

BLAST of Cp4.1LG18g05390 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 1

Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------- 78
           R+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RSFLLQIINPSSKDLQRRRNFRPKPSRFCLMN 104
               R  L  +I PSS  L+RR  + P+ SR   M+
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

BLAST of Cp4.1LG18g05390 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 1

Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSI---------AAITTAQLKLTMLAKAN 78
           RKCLCSPTTHPGSFRCS HR      +++ +SS                 L L  LA  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  AL------------RSFLLQIINPSSKDLQRRRNFRPKPSRF 100
           +L            RS    +  PSS    RR  FRP+ SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

BLAST of Cp4.1LG18g05390 vs. NCBI nr
Match: gi|778660170|ref|XP_011655735.1| (PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 86/113 (76.11%), Postives = 95/113 (84.07%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60
           MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+ RSSSSS++ ITTA 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           L+L   AKANALRSFLLQ+I PSS DLQRRRNF P+PSRFCLMN+H TGLAVS
Sbjct: 61  LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

BLAST of Cp4.1LG18g05390 vs. NCBI nr
Match: gi|659086407|ref|XP_008443918.1| (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSS  K  S  GSRKCLCSPTTHPGSFRCS HR R K+S+  SSSS      A+L
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS------AEL 60

Query: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +L   AKANALR+FLLQ+I PSS D+QRRRNF P+PSRFCLMN+HGTGL VS
Sbjct: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

BLAST of Cp4.1LG18g05390 vs. NCBI nr
Match: gi|1000942539|ref|XP_015582253.1| (PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis])

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASK+ SSN K  +   +R CLCSPTTHPGSFRCS+HRN  + S RS +   A ++  + 
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRT---AHVSPRKW 60

Query: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +L+++AKAN+L++FLLQII PSS DLQRRRNF+P+P+RFCLMN +  G+AVS
Sbjct: 61  ELSVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

BLAST of Cp4.1LG18g05390 vs. NCBI nr
Match: gi|313586597|gb|ADR71309.1| (hypothetical protein 31 [Hevea brasiliensis])

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-25
Identity = 70/114 (61.40%), Postives = 82/114 (71.93%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGS--RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTA 60
           MASK   S+ K Q    +  R CLCSPT HPGSFRCS+HRN R+V  RSSSS+       
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSNKG----- 60

Query: 61  QLKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
             +L ++AKAN+LR+FLLQII PSS DLQRRRNFRP+PSRFCLMN +  G AVS
Sbjct: 61  --ELAVIAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

BLAST of Cp4.1LG18g05390 vs. NCBI nr
Match: gi|720089768|ref|XP_010244874.1| (PREDICTED: uncharacterized protein LOC104588580 [Nelumbo nucifera])

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1

Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MAS++ SSN K Q+    R CLCSPT HPGSFRCS+HRN RK+  RSS   ++  TT + 
Sbjct: 1   MASRNVSSNSKPQN-PAIRTCLCSPTNHPGSFRCSLHRNSRKLYTRSSVHVVSNSTTNRS 60

Query: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
              M+ K N L+ FL+QII PS  DL+RR NF+PKP+RFCLMN++  G+ VS
Sbjct: 61  DWRMVDKPNLLKEFLMQIIKPSKHDLRRRSNFQPKPTRFCLMNSNSGGVTVS 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYY6_CUCSA1.4e-3676.11Uncharacterized protein OS=Cucumis sativus GN=Csa_1G264520 PE=4 SV=1[more]
B9SZN1_RICCO3.0e-2658.93Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1[more]
I3NMS2_HEVBR2.5e-2561.40Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1[more]
F6HCI2_VITVI6.9e-2355.66Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00580 PE=4 SV=... [more]
A0A061GP27_THECC7.6e-2251.79Serine-rich protein-related OS=Theobroma cacao GN=TCM_038231 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11090.18.4e-1241.67 serine-rich protein-related[more]
AT5G25280.14.6e-1039.58 serine-rich protein-related[more]
AT5G20370.11.1e-0839.22 serine-rich protein-related[more]
Match NameE-valueIdentityDescription
gi|778660170|ref|XP_011655735.1|2.1e-3676.11PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus][more]
gi|659086407|ref|XP_008443918.1|1.4e-3270.54PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo][more]
gi|1000942539|ref|XP_015582253.1|4.3e-2658.93PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis][more]
gi|313586597|gb|ADR71309.1|3.6e-2561.40hypothetical protein 31 [Hevea brasiliensis][more]
gi|720089768|ref|XP_010244874.1|7.6e-2355.36PREDICTED: uncharacterized protein LOC104588580 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g05390.1Cp4.1LG18g05390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 18..112
score: 3.1
NoneNo IPR availablePANTHERPTHR33132:SF5SUBFAMILY NOT NAMEDcoord: 18..112
score: 3.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g05390Cp4.1LG11g03130Cucurbita pepo (Zucchini)cpecpeB115
Cp4.1LG18g05390Cp4.1LG04g09160Cucurbita pepo (Zucchini)cpecpeB360