CsaV3_1G028380 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G028380
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSerine-rich protein-related
Locationchr1 : 15411825 .. 15412327 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGAATTCCCCCTTTTTTTTAGTTGCTTAATCAGTCGTTTGTACGTGTAGTAGATCTGGATGTCTGTTTTTGTTCCTGATTTCGATCTTCTTCCTTCGCTGAATTTCCAGATGAGTTTGTAGATATAGTACTCTGTTTGTGTACAGATTATTTCGAGACGACATTGGATCTTGA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTATTTCGAGACGACATTGGATCTTGA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTATTTCGAGACGACATTGGATCTTGA

Protein sequence

MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRLFRDDIGS
BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_011655735.1 (PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus] >KGN65201.1 hypothetical protein Csa_1G264520 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 3.3e-40
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR
Sbjct: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 96

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_008443918.1 (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS           ++A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSS-------SSAE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSR
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSR 89

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+          ITTA 
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          L+   LAKANALRSFLLQ+I PSS DLQRRRNF P+PSR
Sbjct: 61 LKLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSR 98

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MA+KS S   K  + G+SRKCLCSPTTHPGSFRCSFHRNR K +S          IT+A 
Sbjct: 1  MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRK-ASARSSSSSITAITSAQ 60

Query: 61 LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LEL   AKANA+R+FLL +I+PSSNDLQRRRNFHPRPSR
Sbjct: 61 LELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSR 98

BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata])

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 67/99 (67.68%), Postives = 73/99 (73.74%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+S+          ITTA 
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSA-RSSSSSIAAITTAQ 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          L+   LAKANALRSFL Q+I PSS DLQRRRNF P+PSR
Sbjct: 61 LKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98

BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related)

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-10
Identity = 39/94 (41.49%), Postives = 49/94 (52.13%), Query Frame = 0

Query: 18  SRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTADLEL---AKANAL----- 77
           SR+C+CSPTTHPGSFRCS H+N                 TT  L +   A  N+L     
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN-----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGG 179

Query: 78  ------RSFLLQMIKPSSNDLQRRRNFHPRPSRL 98
                 R  L  +I+PSS+ L+RR  + PRPSRL
Sbjct: 180 VEGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRL 208

BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related)

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-10
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
           ++S   S+ HK P   + R+C+CSPTTHPGSFRCS H+N                 TT  
Sbjct: 108 VSSNKPSNHHKIP--DSRRRCMCSPTTHPGSFRCSLHKN-----VANPHGQGTASYTTNG 167

Query: 61  LEL---AKANAL-----------RSFLLQMIKPSSNDLQRRRNFHPRPSRL 98
           L +   A  N+L           R  L  +I+PSS+ L+RR  + PR SRL
Sbjct: 168 LNMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRL 211

BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 43/117 (36.75%), Postives = 47/117 (40.17%), Query Frame = 0

Query: 7   SSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD------ 66
           SS H+       RKCLCSPTTHPGSFRCSFHR      S              D      
Sbjct: 62  SSNHQ-----TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVN 121

Query: 67  -----LELAKANAL------------RSFLLQMIKPSSNDLQRRRNFHPRPSRLFRD 101
                 +LA  N+L            RS    + KPSS    RR  F PR SR   D
Sbjct: 122 VGLNLRKLALMNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRFHED 173

BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 0

Query: 14 TNGASRKCLCSPTTHPGSFRCSFHR 39
          ++   + CLC+PTTHPGSFRC +HR
Sbjct: 58 SSSVRQNCLCAPTTHPGSFRCRYHR 82

BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.6e-04
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 0

Query: 2  ASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRN 40
          A + GS      T+     CLCSPTTHPGSFRC  HR+
Sbjct: 25 AVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.2e-40
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR
Sbjct: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 96

BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.5e-33
Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS           ++A+
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSS-------SSAE 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSR
Sbjct: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSR 89

BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|B9SZN1|B9SZN1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-19
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MASK+ SS  K  T+  +R CLCSPTTHPGSFRCS HRN ++ S+               
Sbjct: 1  MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRTAHVSPRKWELS 60

Query: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
          + +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRP+R
Sbjct: 61 V-IAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTR 95

BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A2P5DX22|A0A2P5DX22_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-17
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60
          MA+K+ +S+ K    G  R CLCSPTTHPGSFRCS HRN HK  S          +T+  
Sbjct: 1  MATKNTASSQKRHVVG--RTCLCSPTTHPGSFRCSLHRNPHKPRSATTVR-----VTSGP 60

Query: 61 LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
           E   +AKAN++++FLLQ+IKPSS+DL RRRNF PRPSR
Sbjct: 61 WEAAMVAKANSIKAFLLQIIKPSSHDLHRRRNFKPRPSR 92

BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A2C9VP58|A0A2C9VP58_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G043000 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.8e-17
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 1  MASKSGSSTHKFPTNGAS---RKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLIT 60
          MASK   S  K     A+   R CLCSPTTHPGSFRCS HRN  ++ S XXXXXXXX   
Sbjct: 1  MASKRAPSDSKSQMKQAASQGRTCLCSPTTHPGSFRCSLHRNYQRVPSRXXXXXXXXXXW 60

Query: 61 TADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 97
             + +AKAN+L++FLLQ+IKPSS+DLQRRRNF PRPSR
Sbjct: 61 ELAV-IAKANSLKAFLLQIIKPSSHDLQRRRNFRPRPSR 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011655735.13.3e-40100.00PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus] >KGN65201.1 hy... [more]
XP_008443918.11.1e-3278.13PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo][more]
XP_023515429.13.9e-2568.69uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo][more]
XP_022927032.11.5e-2466.67uncharacterized protein LOC111433980 [Cucurbita moschata][more]
XP_022921799.11.9e-2467.68uncharacterized protein LOC111429944 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G11090.14.3e-1041.49serine-rich protein-related[more]
AT5G25280.19.6e-1037.84serine-rich protein-related[more]
AT5G20370.11.8e-0836.75serine-rich protein-related[more]
AT3G13227.12.1e-0460.00serine-rich protein-related[more]
AT1G67910.14.6e-0452.63unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA2.2e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1[more]
tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME7.5e-3378.13uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=... [more]
tr|B9SZN1|B9SZN1_RICCO8.0e-1956.25Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1[more]
tr|A0A2P5DX22|A0A2P5DX22_9ROSA4.4e-1755.56Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 S... [more]
tr|A0A2C9VP58|A0A2C9VP58_MANES9.8e-1762.63Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G043000 PE=4 SV=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G028380.1CsaV3_1G028380.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..104
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 2..99
NoneNo IPR availablePANTHERPTHR33132:SF28SERINE-RICH PROTEIN-LIKE PROTEINcoord: 2..99

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G028380Carg09959Silver-seed gourdcarcucB0142
CsaV3_1G028380Carg27189Silver-seed gourdcarcucB0609
CsaV3_1G028380Cla018684Watermelon (97103) v1cucwmB091
CsaV3_1G028380ClCG06G011910Watermelon (Charleston Gray)cucwcgB074
CsaV3_1G028380Cla97C06G121100Watermelon (97103) v2cucwmbB063
CsaV3_1G028380Bhi02G000729Wax gourdcucwgoB104
The following gene(s) are paralogous to this gene:

None