CsaV3_1G028380 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGCAACTGGATTGGCTGTTTCTTGAATTCCCCCTTTTTTTTAGTTGCTTAATCAGTCGTTTGTACGTGTAGTAGATCTGGATGTCTGTTTTTGTTCCTGATTTCGATCTTCTTCCTTCGCTGAATTTCCAGATGAGTTTGTAGATATAGTACTCTGTTTGTGTACAGATTATTTCGAGACGACATTGGATCTTGA ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTATTTCGAGACGACATTGGATCTTGA ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGACCAACGGCGCTTCTCGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGCCACAAGATCTCCTCCTCTAGGTCTTCATCTTCATCCCTTTCCCTCATTACCACTGCCGACTTGGAGCTTGCAAAGGCTAATGCCTTGAGATCATTTCTGCTCCAGATGATTAAGCCCTCCAGTAACGATCTTCAACGGCGGAGGAATTTTCATCCTCGACCTTCCAGATTATTTCGAGACGACATTGGATCTTGA MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTADLELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRLFRDDIGS
BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_011655735.1 (PREDICTED: uncharacterized protein LOC101204798 [Cucumis sativus] >KGN65201.1 hypothetical protein Csa_1G264520 [Cucumis sativus]) HSP 1 Score: 173.7 bits (439), Expect = 3.3e-40 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_008443918.1 (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo]) HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32 Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25 Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata]) HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24 Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata]) HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24 Identity = 67/99 (67.68%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related) HSP 1 Score: 61.2 bits (147), Expect = 4.3e-10 Identity = 39/94 (41.49%), Postives = 49/94 (52.13%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related) HSP 1 Score: 60.1 bits (144), Expect = 9.6e-10 Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related) HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08 Identity = 43/117 (36.75%), Postives = 47/117 (40.17%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related) HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04 Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TAIR10
Match: AT1G67910.1 (unknown protein) HSP 1 Score: 41.2 bits (95), Expect = 4.6e-04 Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 2.2e-40 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 7.5e-33 Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|B9SZN1|B9SZN1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.0e-19 Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A2P5DX22|A0A2P5DX22_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 4.4e-17 Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 0
BLAST of CsaV3_1G028380 vs. TrEMBL
Match: tr|A0A2C9VP58|A0A2C9VP58_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G043000 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 9.8e-17 Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |