Carg09670 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09670
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S21
Location	Cucurbita_argyrosperma_scaffold_023 : 256606 .. 259261 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGATTGGGAAACTTATCCACAAATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGATCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCACAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGTCTGTTTCTAAAATTTCTTGTGGTTTCTTTTGGGATTTGTGTTTTTGGTTGTGAATTCTGTGATTGTTTGTTTGGATTTTGATTTATTGTGATTCTTCTCCTTGAATTGTTCGCGCTTTGTGTTCTGTCCTTTTAGTGTTGAATTTGATTGCTAGGAAGGTAACCCGTTAGATGTATGAGAGAAAAGTAGCTTAAATCGTTGGCCTCATTAATATTGATTCTTCTTCAGTCCTCGTTGAGCTTAGCTTCCCTTGCTTCCCTTTTCCAATGGCTATGCAGTGTTTAGTGTTTATCGTGAGCACGATAACTAGTACACTAGAGGTGCGTTCTTCCCGATTTTTATACTTTGGTTACTGAGAGACATGCAGATTTTTGAACCTATATTCAACAGTTATTATGAGGTAGCTGACCTTGTTGAACGATTGGTCCAAGAGTAAGAACATATTCTTGAAAAGGTGTATATCTTTGCCAATACGAACAGGGTGCAGTGTACGAAAAGGTTGTTTGAACTTGCCCCATGACGAAGCGAAAATAACTACTCGGTAAAGGACGGAGAGTCTTGCTGCTTGTCGTTGAAAATGCGATTATTGCATTCTAAACCATCTACTGAAAACTCCTCGTAAAGAATGTTTTGTTTTCCTCTCCAACCAGCGTTGAATCTCACAATTCACCCCATTCAGGGTCCAATGTCCTCTCTAGCACTCGTTATCTTCTCCAATTGATGTGGGACCCTCTAATCCATTCTCGACTGCCTTGTGTCCACCCCCTTCGAAGCTCAACCTTCTCGATGGCACATCGCTCTGTTAGTCTATGGAGCCTGATACTTATTTATAGCTTGGTCAATGGTTATATCCGATAAAGCTATATTAGGTAAAGCTATATATAGTAAAGCTATATCTGGTAAAGCTATATATGGTAAATAGCTATATATAGTAGATGGCTAAATCTGGTAAAGCTATATATAGTAAACTATACCATATATATATCTGGTCCGGTACAGCTTTGAAAATGTACTTTTCTCTGTAATTCTCTCTGTACATACGTGAAGTCATCAATACAAAGAAATCCTTTTAGCCAGAGTTCTCCTTGTAATTTTCTCTTTCCTTTTTCTTTGTGTTCATCCAGATCGAGTGTGTGAGTTGTTGTGCGTTGTTGTGCGATCCTAACAACTGGTATCAGAGCTAACGACTGATATCGATCCTAACACGCTCAGTGTCTGGCTCTGATACTATTTGTAGCAGCCCAAGCCCACCGTTAGTAGATATGGTTCTTTTTTCGAGTTTCCCTCTCAAGGTTTTTAAAACACGTCTGCTAGGGAGAGGTTTCTACACCCTTAAGAATGCTTCGTTCTCCTCTCCAATCGAGGTGGGATCTCAAGTTTCCATATTCCCCATGCATAATAAGGGACAGCTAATGCTTTCTCTGTAGGACAACCTGAGTATTGACGTTGGAATTGCTTAGCTCCCAAATAAAGAATTCGATCTTTTTGGGATATGAACCACTCTATTTTATTAAAAGACTCTGGTTCTTCATTTTGGGAGGAAGGTTAACCCAATTGTCGAACCCGAGAGAATTCCTTCCACACAAAATTGGAGAAAGACCAAACTTGACAATGAATCTAAGGAGAACCCAACTCACTTATCGATCTCAAAGTACGATTAATCTGCTTATTTAAGTGAACAAAGAAACTCCATGGGTGAGGCCAATGCAACTATAGCTTTTCCGGTTGAGTGCTGAATGCCAACGAGAAGGTGCACCTTTTTTTGTTGATTAAGAATGACAAGAGATTTCTTCCTTTTTCGTTTCGTTATTATTGTATTTTGTTCTCGTAAATAGAGAATTTCACCGAACACCTTATATCTCGAAACCAAGTACACCATTACTCGAGATGGAAGATGGCTGTAGAAAAACGTCTTATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAACGTTTGTGATGGGAAAATGGATATCATTTACGTGCTTAAGGTGTTTGATGAAACTGAGTTATGATTTGGTTGATGAACAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA

mRNA sequence

AAATGGATTGGGAAACTTATCCACAAATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGATCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCACAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA

Coding sequence (CDS)

AAATGGATTGGGAAACTTATCCACAAATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGATCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCACAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA

Protein sequence

KWIGKLIHKSNSQSCELYTEFPDPSMASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIPY

Homology

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BLAST of Carg09670 vs. NCBI nr
Match: XP_022934586.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 3.0e-90
Identity = 200/206 (97.09%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   KWIGKLIHKSNSQSCELYTEFPDPSMASLSXXXXXXXXXXXXXXXXXXXLIASPSPANQA 60
           KWIGKLIHKSNS+SCELYTE PDPSMASLS   XXXXXXXXXXXXXXXXLIASPSPANQA
Sbjct: 7   KWIGKLIHKSNSRSCELYTELPDPSMASLSSFFXXXXXXXXXXXXXXXXLIASPSPANQA 66

Query: 61  ADQFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDD 120
           A QFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDD
Sbjct: 67  AAQFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDD 126

Query: 121 NEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQ 180
           NEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQ
Sbjct: 127 NEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQ 186

Query: 181 DKQDVPATKQEADDDNWDLPEEGIPY 207
           DKQDVPATKQEADDDNWDLPEEGIPY
Sbjct: 187 DKQDVPATKQEADDDNWDLPEEGIPY 212

[Close]

BLAST of Carg09670 vs. NCBI nr
Match: XP_023527532.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 160/181 (88.40%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 26  MASLSXXXXXXXXXXXXXXXXXXXLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHS 85
           MASLS                   LIASPSPANQAA QFQTLKSRDGSVALSPQQA KHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 86  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 145
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 146 RRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 205
           RRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 206 Y 207
           Y
Sbjct: 181 Y 181

[Close]

BLAST of Carg09670 vs. NCBI nr
Match: XP_022982709.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 287.7 bits (735), Expect = 3.1e-74
Identity = 157/181 (86.74%), Postives = 158/181 (87.29%), Query Frame = 0


Query: 26  MASLSXXXXXXXXXXXXXXXXXXXLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHS 85
           MASLS                   LIASPSPANQAA QFQTLKSRDGSVALSPQQA KHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 86  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 145
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 146 RRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 205
           RRKFFENPHD+KKRKSREAA  XXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDIKKRKSREAAKRXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 206 Y 207
           Y
Sbjct: 181 Y 181

[Close]

BLAST of Carg09670 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 1.2e-65
Identity = 164/191 (85.86%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 19  TEF-PDPSMASLSXXXXXXXXXXXXXXXXXXXLIA-SPSPANQAADQFQTLKSRDGSVAL 78
           TEF   PSMASLSXXXXXXXXXXXXXXXXXXXLIA SPSP N AA QFQTLKSRDGSVAL
Sbjct: 41  TEFQAQPSMASLSXXXXXXXXXXXXXXXXXXXLIASSPSPPNHAAAQFQTLKSRDGSVAL 100

Query: 79  SPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM 138
            PQQ   HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM
Sbjct: 101 KPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM 160

Query: 139 RAGVIQECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDN 198
           RAGVIQECKRR+FFEN  DV+KRK+REAA       PQ RFTPQ+KQDVPATKQEADDDN
Sbjct: 161 RAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDN 220

Query: 199 WDLPEEG-IPY 207
           WDLPEE  IPY
Sbjct: 221 WDLPEEADIPY 231

[Close]

BLAST of Carg09670 vs. NCBI nr
Match: 3BBN_U (Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. >AAL35983.1 ribosome-like protein, partial [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 8.3e-64
Identity = 146/184 (79.35%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 24  PSMASLSXXXXXXXXXXXXXXXXXXXLIA-SPSPANQAADQFQTLKSRDGSVALSPQQAS 83
           PSMASLS        XXXXXXXX    IA SPSP+N AA QFQTLKSRDGSVAL+PQQ  
Sbjct: 6   PSMASLSSFFSFLLPXXXXXXXXHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGP 65

Query: 84  KHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 143
            HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 66  NHSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQ 125

Query: 144 ECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPE- 203
           ECKRR+FFEN  DV+KRK+REAA       PQ RFTPQ+KQDVPATKQEADDDNWDLPE 
Sbjct: 126 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPED 185

Query: 204 EGIP 206
           E IP
Sbjct: 186 EDIP 189

[Close]

BLAST of Carg09670 vs. TAIR10
Match: AT3G27160.1 (Ribosomal protein S21 family protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 75  ALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRRE 134
           +++ ++ S  +  LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRRE
Sbjct: 48  SMAVEETSSTASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRRE 107

Query: 135 VMRAGVIQECK 146
           VMR GVIQECK
Sbjct: 108 VMRTGVIQECK 118

[Close]

BLAST of Carg09670 vs. TAIR10
Match: AT5G63300.2 (Ribosomal protein S21 family protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 75  ALSPQQASKHSEPLSAELASVI----CPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLN 134
           A + Q  S  ++ L+AE   VI     PSLA AN +FF+S+ YNV+V+  D E EE+L+N
Sbjct: 38  ARTSQHLSMTTKILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVN 97

Query: 135 RFRREVMRAGVIQE 144
            F+R   RAGV+QE
Sbjct: 98  DFKRSCFRAGVLQE 111

[Close]

BLAST of Carg09670 vs. Swiss-Prot
Match: sp|P82024|RR21_SPIOL (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 54  PSPANQAADQFQTLKSRDGSVALSPQQ----ASKHSEPLSAELASVICPSLAFANTMFFR 113
           P  +N       +L S+  S+++S ++    A    E    +L +V+CPSLAF+NT++FR
Sbjct: 22  PPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKKEEYPGDLMAVVCPSLAFSNTLYFR 81

Query: 114 SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK--RRKFFENPHDVKKRKSREAAXX 173
           SAYNVQV+VDDNE EERLLNRFRREVMRAGVIQECK                      XX
Sbjct: 82  SAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKXXXXXXXXXXXXXXXXXXXXXXXX 141

Query: 174 XXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIPY 207
           XXXX P +   P  ++     K+E D DNWD+PE G P+
Sbjct: 142 XXXXGPFRGPFPGKEEATKVDKKEDDGDNWDMPEGGAPF 180

[Close]

BLAST of Carg09670 vs. Swiss-Prot
Match: sp|P48949|RS21_SYNY3 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 115 QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRK 161
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE P +  KRK
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK 48

[Close]

BLAST of Carg09670 vs. Swiss-Prot
Match: sp|B0CE36|RS21_ACAM1 (30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 114 VQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRK 161
           VQV++ ++E  E  L RF+R+V +AG++ + KRR+ FE P + KKRK
Sbjct: 2   VQVVLGEDEGIESALRRFKRQVSKAGILADVKRRRHFETPLEKKKRK 48

[Close]

BLAST of Carg09670 vs. Swiss-Prot
Match: sp|B8GPU0|RS21_THISH (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 116 VIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREA 165
           V V +NEP E  L RF+R   +AGV+ E +RR+F+E P +++KRK+  A
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAA 52

[Close]

BLAST of Carg09670 vs. Swiss-Prot
Match: sp|B0JIQ1|RS21_MICAN (30S ribosomal protein S21 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.3e-04
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 115 QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKS 162
           QV+V  NE  E  L RF+R+V +AG+  + K+ +FFE P + +KRK+
Sbjct: 3   QVVVGQNEAIESALRRFKRQVAKAGIYADIKKHQFFETPQEKRKRKA 49

[Close]

BLAST of Carg09670 vs. TrEMBL
Match: tr|A0A1S3BNG4|A0A1S3BNG4_CUCME (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.7e-66
Identity = 164/191 (85.86%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 19  TEF-PDPSMASLSXXXXXXXXXXXXXXXXXXXLIA-SPSPANQAADQFQTLKSRDGSVAL 78
           TEF   PSMASLSXXXXXXXXXXXXXXXXXXXLIA SPSP N AA QFQTLKSRDGSVAL
Sbjct: 41  TEFQAQPSMASLSXXXXXXXXXXXXXXXXXXXLIASSPSPPNHAAAQFQTLKSRDGSVAL 100

Query: 79  SPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM 138
            PQQ   HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM
Sbjct: 101 KPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVM 160

Query: 139 RAGVIQECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDN 198
           RAGVIQECKRR+FFEN  DV+KRK+REAA       PQ RFTPQ+KQDVPATKQEADDDN
Sbjct: 161 RAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDN 220

Query: 199 WDLPEEG-IPY 207
           WDLPEE  IPY
Sbjct: 221 WDLPEEADIPY 231

[Close]

BLAST of Carg09670 vs. TrEMBL
Match: tr|Q8VWX5|Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 5.5e-64
Identity = 146/184 (79.35%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 24  PSMASLSXXXXXXXXXXXXXXXXXXXLIA-SPSPANQAADQFQTLKSRDGSVALSPQQAS 83
           PSMASLS        XXXXXXXX    IA SPSP+N AA QFQTLKSRDGSVAL+PQQ  
Sbjct: 6   PSMASLSSFFSFLLPXXXXXXXXHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGP 65

Query: 84  KHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 143
            HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 66  NHSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQ 125

Query: 144 ECKRRKFFENPHDVKKRKSREAAXXXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLPE- 203
           ECKRR+FFEN  DV+KRK+REAA       PQ RFTPQ+KQDVPATKQEADDDNWDLPE 
Sbjct: 126 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPED 185

Query: 204 EGIP 206
           E IP
Sbjct: 186 EDIP 189

[Close]

BLAST of Carg09670 vs. TrEMBL
Match: tr|A0A0A0LDL7|A0A0A0LDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.6e-63
Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 50  LIASPSPANQAADQFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFR 109
           + +SPSP+N AA QFQTLKSRDGSVAL+PQQ   HSEPLSAELASVICPSLA+ANTMFFR
Sbjct: 26  IASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAELASVICPSLAYANTMFFR 85

Query: 110 SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAXXXX 169
           SAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQECKRR+FFEN  DV+KRK+REAA    
Sbjct: 86  SAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNR 145

Query: 170 XXXPQQRFTPQDKQDVPATKQEADDDNWDLPE-EGIP 206
              PQ RFTPQ+KQDVPATKQEADDDNWDLPE E IP
Sbjct: 146 RRRPQARFTPQNKQDVPATKQEADDDNWDLPEDEDIP 182

[Close]

BLAST of Carg09670 vs. TrEMBL
Match: tr|I3RZW2|I3RZW2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.3e-32
Identity = 85/152 (55.92%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 52  ASPSPANQAADQFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSA 111
           +SP P++       TLK    S   +     +   P   EL+SV+CPSLA++NT+FFRSA
Sbjct: 32  SSPLPSH-------TLKMMKPSHNSASPTTPRRDGPSCDELSSVVCPSLAYSNTLFFRSA 91

Query: 112 YNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAA-XXXXX 171
           YNVQV+V + E EERLLNRFRREVM+AGVIQECKRR+FFEN  D KKRK R+AA      
Sbjct: 92  YNVQVVVGEEEGEERLLNRFRREVMKAGVIQECKRRRFFENKQDEKKRKHRDAAKRASRA 151

Query: 172 XXPQQRFTPQDKQDVP-ATKQEADDDNWDLPE 202
             P  +F+ Q+KQDVP  TK+  DDDNWDLPE
Sbjct: 152 RRPFTKFSAQNKQDVPTTTKKVKDDDNWDLPE 176

[Close]

BLAST of Carg09670 vs. TrEMBL
Match: tr|A0A1S3XQS4|A0A1S3XQS4_TOBAC (uncharacterized protein LOC107767513 OS=Nicotiana tabacum OX=4097 GN=LOC107767513 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.2e-31
Identity = 82/159 (51.57%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 52  ASPSPANQAADQFQTLKSRDGSVALSPQQASKHSEPLS---AELASVICPSLAFANTMFF 111
           + P P   A  QF +L   D   + +P    K+  PLS   +++ +V+CPSLA ANT++F
Sbjct: 16  SKPPPPKAAPLQF-SLPFADSLSSSTPINNHKYPLPLSCSNSDVTTVVCPSLANANTLYF 75

Query: 112 RSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAXXX 171
           RS YNVQVIVDDNE EE+L+ RFRREVMRAGVIQECKRR++FEN HD  KRKSREAA   
Sbjct: 76  RSGYNVQVIVDDNEHEEKLVGRFRREVMRAGVIQECKRRRYFENKHDKLKRKSREAAKRN 135

Query: 172 XXXXPQQRFTPQDKQDVPATKQEAD-DDNWDLPEEGIPY 207
                  R    DKQ+    K++ + +DNW+LP+ G+PY
Sbjct: 136 RKRRGPPRNFSDDKQEASKNKRDDEGEDNWELPDGGLPY 173

The following BLAST results are available for this feature:

BLAST of Carg09670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934586.1	3.0e-90	97.09	30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]	[more]
XP_023527532.1	2.3e-74	88.40	30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982709.1	3.1e-74	86.74	30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]	[more]
XP_008450090.2	1.2e-65	85.86	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
3BBN_U	8.3e-64	79.35	Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a C...	[more]

BLAST of Carg09670 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27160.1	1.3e-21	67.61	Ribosomal protein S21 family protein	[more]
AT5G63300.2	6.1e-08	47.30	Ribosomal protein S21 family protein	[more]

BLAST of Carg09670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82024\|RR21_SPIOL	1.1e-22	45.91	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
sp\|P48949\|RS21_SYNY3	1.0e-04	47.83	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
sp\|B0CE36\|RS21_ACAM1	1.7e-04	46.81	30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]
sp\|B8GPU0\|RS21_THISH	1.7e-04	46.94	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]
sp\|B0JIQ1\|RS21_MICAN	2.3e-04	44.68	30S ribosomal protein S21 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 ...	[more]

BLAST of Carg09670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNG4\|A0A1S3BNG4_CUCME	7.7e-66	85.86	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
tr\|Q8VWX5\|Q8VWX5_CUCSA	5.5e-64	79.35	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]
tr\|A0A0A0LDL7\|A0A0A0LDL7_CUCSA	3.6e-63	82.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]
tr\|I3RZW2\|I3RZW2_LOTJA	4.3e-32	55.92	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|A0A1S3XQS4\|A0A1S3XQS4_TOBAC	6.2e-31	51.57	uncharacterized protein LOC107767513 OS=Nicotiana tabacum OX=4097 GN=LOC10776751...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR038380	S21_sf
IPR001911	Ribosomal_S21

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09670-RA	Carg09670-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 117..125 score: 42.59 coord: 137..147 score: 38.64 coord: 149..159 score: 39.39 coord: 125..134 score: 43.33
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 114..171 e-value: 1.5E-14 score: 51.6
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 115..169 e-value: 1.0E-19 score: 69.8
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 27..206
IPR001911	Ribosomal protein S21	PRODOM	PD005521		coord: 130..155 e-value: 2.0E-4 score: 105.0
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 113..169 score: 14.617
IPR038380	Ribosomal protein S21 superfamily	GENE3D	G3DSA:1.20.5.1150		coord: 128..166 e-value: 2.2E-9 score: 38.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..206
None	No IPR available	PANTHER	PTHR21109:SF6	PLASTID RIBOSOMAL PROTEIN S21	coord: 27..206

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09670	Cla004063	Watermelon (97103) v1	carwmB0433
Carg09670	Csa3G588450	Cucumber (Chinese Long) v2	carcuB0466
Carg09670	MELO3C014875	Melon (DHL92) v3.5.1	carmeB0444
Carg09670	ClCG05G013420	Watermelon (Charleston Gray)	carwcgB0428
Carg09670	CSPI03G25620	Wild cucumber (PI 183967)	carcpiB0471
Carg09670	Cucsa.054210	Cucumber (Gy14) v1	carcgyB0500
Carg09670	CmaCh14G007080	Cucurbita maxima (Rimu)	carcmaB0607
Carg09670	CmaCh11G014960	Cucurbita maxima (Rimu)	carcmaB0605
Carg09670	CmoCh14G007270	Cucurbita moschata (Rifu)	carcmoB0592
Carg09670	CmoCh11G016220	Cucurbita moschata (Rifu)	carcmoB0589
Carg09670	Lsi07G014700	Bottle gourd (USVL1VR-Ls)	carlsiB399
Carg09670	Cp4.1LG03g06830	Cucurbita pepo (Zucchini)	carcpeB0613
Carg09670	Cp4.1LG04g05970	Cucurbita pepo (Zucchini)	carcpeB0614
Carg09670	CsGy3G024050	Cucumber (Gy14) v2	carcgybB0443
Carg09670	MELO3C014875.2	Melon (DHL92) v3.6.1	carmedB0446
Carg09670	CsaV3_3G027140	Cucumber (Chinese Long) v3	carcucB0467
Carg09670	Cla97C05G094970	Watermelon (97103) v2	carwmbB0459
Carg09670	Bhi01G001602	Wax gourd	carwgoB0526

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09670	Carg15567	Silver-seed gourd	carcarB397

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09670	Watermelon (97103) v2	carwmbB0460
Carg09670	Silver-seed gourd	carcarB388
Carg09670	Silver-seed gourd	carcarB446
Carg09670	Cucumber (Gy14) v2	carcgybB0442
Carg09670	Cucurbita maxima (Rimu)	carcmaB0603
Carg09670	Cucurbita maxima (Rimu)	carcmaB0604
Carg09670	Cucurbita moschata (Rifu)	carcmoB0588
Carg09670	Cucurbita moschata (Rifu)	carcmoB0590
Carg09670	Cucurbita pepo (Zucchini)	carcpeB0610
Carg09670	Cucumber (Chinese Long) v3	carcucB0466
Carg09670	Bottle gourd (USVL1VR-Ls)	carlsiB397
Carg09670	Melon (DHL92) v3.5.1	carmeB0442
Carg09670	Watermelon (Charleston Gray)	carwcgB0430
Carg09670	Watermelon (97103) v1	carwmB0437