Carg09670-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAATGGATTGGGAAACTTATCCACAAATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGATCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCACAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGTCTGTTTCTAAAATTTCTTGTGGTTTCTTTTGGGATTTGTGTTTTTGGTTGTGAATTCTGTGATTGTTTGTTTGGATTTTGATTTATTGTGATTCTTCTCCTTGAATTGTTCGCGCTTTGTGTTCTGTCCTTTTAGTGTTGAATTTGATTGCTAGGAAGGTAACCCGTTAGATGTATGAGAGAAAAGTAGCTTAAATCGTTGGCCTCATTAATATTGATTCTTCTTCAGTCCTCGTTGAGCTTAGCTTCCCTTGCTTCCCTTTTCCAATGGCTATGCAGTGTTTAGTGTTTATCGTGAGCACGATAACTAGTACACTAGAGGTGCGTTCTTCCCGATTTTTATACTTTGGTTACTGAGAGACATGCAGATTTTTGAACCTATATTCAACAGTTATTATGAGGTAGCTGACCTTGTTGAACGATTGGTCCAAGAGTAAGAACATATTCTTGAAAAGGTGTATATCTTTGCCAATACGAACAGGGTGCAGTGTACGAAAAGGTTGTTTGAACTTGCCCCATGACGAAGCGAAAATAACTACTCGGTAAAGGACGGAGAGTCTTGCTGCTTGTCGTTGAAAATGCGATTATTGCATTCTAAACCATCTACTGAAAACTCCTCGTAAAGAATGTTTTGTTTTCCTCTCCAACCAGCGTTGAATCTCACAATTCACCCCATTCAGGGTCCAATGTCCTCTCTAGCACTCGTTATCTTCTCCAATTGATGTGGGACCCTCTAATCCATTCTCGACTGCCTTGTGTCCACCCCCTTCGAAGCTCAACCTTCTCGATGGCACATCGCTCTGTTAGTCTATGGAGCCTGATACTTATTTATAGCTTGGTCAATGGTTATATCCGATAAAGCTATATTAGGTAAAGCTATATATAGTAAAGCTATATCTGGTAAAGCTATATATGGTAAATAGCTATATATAGTAGATGGCTAAATCTGGTAAAGCTATATATAGTAAACTATACCATATATATATCTGGTCCGGTACAGCTTTGAAAATGTACTTTTCTCTGTAATTCTCTCTGTACATACGTGAAGTCATCAATACAAAGAAATCCTTTTAGCCAGAGTTCTCCTTGTAATTTTCTCTTTCCTTTTTCTTTGTGTTCATCCAGATCGAGTGTGTGAGTTGTTGTGCGTTGTTGTGCGATCCTAACAACTGGTATCAGAGCTAACGACTGATATCGATCCTAACACGCTCAGTGTCTGGCTCTGATACTATTTGTAGCAGCCCAAGCCCACCGTTAGTAGATATGGTTCTTTTTTCGAGTTTCCCTCTCAAGGTTTTTAAAACACGTCTGCTAGGGAGAGGTTTCTACACCCTTAAGAATGCTTCGTTCTCCTCTCCAATCGAGGTGGGATCTCAAGTTTCCATATTCCCCATGCATAATAAGGGACAGCTAATGCTTTCTCTGTAGGACAACCTGAGTATTGACGTTGGAATTGCTTAGCTCCCAAATAAAGAATTCGATCTTTTTGGGATATGAACCACTCTATTTTATTAAAAGACTCTGGTTCTTCATTTTGGGAGGAAGGTTAACCCAATTGTCGAACCCGAGAGAATTCCTTCCACACAAAATTGGAGAAAGACCAAACTTGACAATGAATCTAAGGAGAACCCAACTCACTTATCGATCTCAAAGTACGATTAATCTGCTTATTTAAGTGAACAAAGAAACTCCATGGGTGAGGCCAATGCAACTATAGCTTTTCCGGTTGAGTGCTGAATGCCAACGAGAAGGTGCACCTTTTTTTGTTGATTAAGAATGACAAGAGATTTCTTCCTTTTTCGTTTCGTTATTATTGTATTTTGTTCTCGTAAATAGAGAATTTCACCGAACACCTTATATCTCGAAACCAAGTACACCATTACTCGAGATGGAAGATGGCTGTAGAAAAACGTCTTATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAACGTTTGTGATGGGAAAATGGATATCATTTACGTGCTTAAGGTGTTTGATGAAACTGAGTTATGATTTGGTTGATGAACAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA AAATGGATTGGGAAACTTATCCACAAATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGATCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCACAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA AAATGGATTGGGAAACTTATCCACAAATCGAACTCTCAAAGTTGCGAACTCTACACTGAATTTCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGATCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCACAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA KWIGKLIHKSNSQSCELYTEFPDPSMASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIPY
BLAST of Carg09670-RA vs. NCBI nr
Match: XP_022934586.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 340.9 bits (873), Expect = 3.0e-90 Identity = 200/206 (97.09%), Postives = 201/206 (97.57%), Query Frame = 0
BLAST of Carg09670-RA vs. NCBI nr
Match: XP_023527532.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74 Identity = 160/181 (88.40%), Postives = 160/181 (88.40%), Query Frame = 0
BLAST of Carg09670-RA vs. NCBI nr
Match: XP_022982709.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 287.7 bits (735), Expect = 3.1e-74 Identity = 157/181 (86.74%), Postives = 158/181 (87.29%), Query Frame = 0
BLAST of Carg09670-RA vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]) HSP 1 Score: 259.2 bits (661), Expect = 1.2e-65 Identity = 164/191 (85.86%), Postives = 168/191 (87.96%), Query Frame = 0
BLAST of Carg09670-RA vs. NCBI nr
Match: 3BBN_U (Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. >AAL35983.1 ribosome-like protein, partial [Cucumis sativus]) HSP 1 Score: 253.1 bits (645), Expect = 8.3e-64 Identity = 146/184 (79.35%), Postives = 154/184 (83.70%), Query Frame = 0
BLAST of Carg09670-RA vs. TAIR10
Match: AT3G27160.1 (Ribosomal protein S21 family protein) HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21 Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 0
BLAST of Carg09670-RA vs. TAIR10
Match: AT5G63300.2 (Ribosomal protein S21 family protein) HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of Carg09670-RA vs. Swiss-Prot
Match: sp|P82024|RR21_SPIOL (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2) HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22 Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 0
BLAST of Carg09670-RA vs. Swiss-Prot
Match: sp|P48949|RS21_SYNY3 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04 Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0
BLAST of Carg09670-RA vs. Swiss-Prot
Match: sp|B0CE36|RS21_ACAM1 (30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsU PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04 Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of Carg09670-RA vs. Swiss-Prot
Match: sp|B8GPU0|RS21_THISH (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04 Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of Carg09670-RA vs. Swiss-Prot
Match: sp|B0JIQ1|RS21_MICAN (30S ribosomal protein S21 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rpsU PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 2.3e-04 Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 0
BLAST of Carg09670-RA vs. TrEMBL
Match: tr|A0A1S3BNG4|A0A1S3BNG4_CUCME (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 7.7e-66 Identity = 164/191 (85.86%), Postives = 168/191 (87.96%), Query Frame = 0
BLAST of Carg09670-RA vs. TrEMBL
Match: tr|Q8VWX5|Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 5.5e-64 Identity = 146/184 (79.35%), Postives = 154/184 (83.70%), Query Frame = 0
BLAST of Carg09670-RA vs. TrEMBL
Match: tr|A0A0A0LDL7|A0A0A0LDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 3.6e-63 Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0
BLAST of Carg09670-RA vs. TrEMBL
Match: tr|I3RZW2|I3RZW2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 4.3e-32 Identity = 85/152 (55.92%), Postives = 104/152 (68.42%), Query Frame = 0
BLAST of Carg09670-RA vs. TrEMBL
Match: tr|A0A1S3XQS4|A0A1S3XQS4_TOBAC (uncharacterized protein LOC107767513 OS=Nicotiana tabacum OX=4097 GN=LOC107767513 PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 6.2e-31 Identity = 82/159 (51.57%), Postives = 106/159 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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